ID: uc002ffw.3_intron_5_0_chr16_81053882_f.3p
GENE: (6)
chr16:81056160-81056409+


(1)
B-CELL 		(1)
BRAIN 		(12)
CELL-LINE 		(1)
CERVIX 		(9)
HEART 		(5)
HELA 		(2)
LIVER 		(3)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
GGCAGTAATCCTAGTAATAGTCTTGCAAATTTTCATTTCAAGGCGCTGACAATTGCTAGCAAACACCATCAGATTGTGAAAATGGACCTGAGAAGTCGGTATCTGGACTCTCTTAAGGCTATTGTTTTTAAACAGTATAATCAGGTGAGCCAATCAGTGACTCTCTTTAAAGGTAAATCTTTATTTTCTCTTTGACACAGGAGTTAGAAGCTACTGGGAAAATCTACCTCCGACAAGAGGAGATCATTTT
...............................................................(((.........)))....(((.(((((((((((........)))).))))).))))).................................................................................................................................
..............................................................63........................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)
...................................................................ATCAGATTGTGAAAAAA......................................................................................................................................................................1714.000.006.001.001.001.004.00--1.00-----------------------------------
..................................................................CATCAGATTGTGAAA.........................................................................................................................................................................1598.008.00-2.222.220.561.00--0.22--------1.220.110.11--------------------0.22--0.11
..................................................................CATCAGATTGTGAAAA........................................................................................................................................................................1645.505.50-2.001.001.000.75-----------0.250.250.25------------------------
....................................................................................................ATCTGGACTCTCTTAAG.....................................................................................................................................1715.005.003.00-------------1.00-------1.00--------------------
..................................................................CATCAGATTGTGAAAAAA......................................................................................................................................................................1843.755.50-1.250.50-0.75-----------0.250.250.25---------------0.250.25-------
................................................................ACCATCAGATTGTGAATC........................................................................................................................................................................183.000.00---------1.00--------1.00-1.00----------------------
....................................................................................................ATCTGGACTCTCTTAAGG....................................................................................................................................1813.003.002.00------------1.00-----------------------------
...............................................................................AAATGGACCTGAGAAGTCGGT......................................................................................................................................................2113.003.00------3.00------------------------------------
................................................................ACCATCAGATTGTGAATCT.......................................................................................................................................................................192.000.00---------1.00---------------1.00-----------------
....................................................................................GACCTGAGAAGTCGGTATCTGGAC..............................................................................................................................................2412.002.00-2.00-----------------------------------------
....................................................................................................ATCTGGACTCTCTTAAGGC...................................................................................................................................1912.002.002.00------------------------------------------
...............................................................................................................................................................................................................AAGCTACTGGGAAAATCTACCCCCG..................252.000.00-----2.00-------------------------------------
.........................CAAATTTTCATTTCAATTTG.............................................................................................................................................................................................................201.000.00---------------1.00---------------------------
.................................................................CCATCAGATTGTGAATC........................................................................................................................................................................171.000.00-----------1.00-------------------------------
...............................................................................................................................................................................................TTGACACAGGAGTTAGAAGCT......................................2111.001.00-------------1.00-----------------------------
......................................................................................................CTGGACTCTCTTAAGGTAGC................................................................................................................................201.000.00------------------------1.00------------------
...................................................................ATCAGATTGTGAAAATGG.....................................................................................................................................................................1811.001.00--1.00----------------------------------------
..............................................TGACAATTGCTAGCAAACACCATC....................................................................................................................................................................................2411.001.00--1.00----------------------------------------
.....................................................................CAGATTGTGAAAATGGACCTGAGAAGT..........................................................................................................................................................2711.001.00--------------------------------1.00----------
...............................................................................................................................................................................................................AAGCTACTGGGAAAATCTACCC.....................221.000.00-----1.00-------------------------------------
..........................................................................................AGAAGTCGGTATCTGTAAG.............................................................................................................................................191.000.00----------1.00--------------------------------
...............................................................................AAATGGACCTGAGAAGTCGGTAT....................................................................................................................................................2311.001.00---1.00---------------------------------------
.............................................................................GAAAATGGACCTGAGAAGTCG........................................................................................................................................................2111.001.00-----------------------1.00-------------------
...........................................................................GTGAAAATGGACCTGAGAAGTCGGTATCT..................................................................................................................................................2911.001.00---1.00---------------------------------------
...AGTAATCCTAGTAATAGTCTTGCAAATTTTCATTTCAAGGCGCTGACAATTGCTAGCAAACACCATCAGATTGTGAAAATGGACCTGAGAAGTCGGA......................................................................................................................................................971.000.00------------1.00------------------------------
..........................................................................................AGAAGTCGGTATCTGGACT.............................................................................................................................................1911.001.00---------------------------1.00---------------
................................................................................................................................................................................ATCTTTATTTTCTCTTATCA......................................................201.000.00---------------1.00---------------------------
..................................................................................TGGACCTGAGAAGTCGGTA.....................................................................................................................................................1911.001.00-----------------------------1.00-------------
....................................................................TCAGATTGTGAAAATGGACCTGAGAAGTCGG.......................................................................................................................................................3111.001.00--------1.00----------------------------------
...................................................ATTGCTAGCAAACACCATCAGATTGTGAAAATGGACCTGAGAAGTCGGTATCTGGA...............................................................................................................................................5611.001.00-------------------1.00-----------------------
.................................................CAATTGCTAGCAAACACCATCAG..................................................................................................................................................................................2311.001.00---1.00---------------------------------------
...............................................GACAATTGCTAGCAAACACCATCAGATTGT.............................................................................................................................................................................3011.001.00----------------------------1.00--------------
.....................................................................CAGATTGTGAAAATGGACCTGAGAAGTCGGTATCTGGACTCTCTTAAG.....................................................................................................................................4811.001.00------------1.00------------------------------
..........................................................................TGTGAAAATGGACCTGAGAAGTCGGTACCAT.................................................................................................................................................311.000.00-------------------------------1.00-----------
..............................................................................AAAATGGACCTGAGAAGTCGGTATCTGG................................................................................................................................................2811.001.00---------------------1.00---------------------
................................................................................AATGGACCTGAGAAGTCGGT......................................................................................................................................................2011.001.00-------1.00-----------------------------------
........................................................................................TGAGAAGTCGGTATCTGGACTCT...........................................................................................................................................2311.001.00---1.00---------------------------------------
................................................................................AATGGACCTGAGAAGTCGGTATCTGGAC..............................................................................................................................................2811.001.00--------------------------1.00----------------
........................................................................................................GGACTCTCTTAAGGCTAT................................................................................................................................1811.001.00---------------------------------1.00---------
......................................................................................CCTGAGAAGTCGGTAGGG..................................................................................................................................................181.000.00-----------1.00-------------------------------
....................................................................TCAGATTGTGAAAATGGACCTGAGAAGTCGGT......................................................................................................................................................3211.001.00--1.00----------------------------------------
.................................................................CCATCAGATTGTGAATCT.......................................................................................................................................................................181.000.00-----------------1.00-------------------------
...................................................................ATCAGATTGTGAAAATGGACCT.................................................................................................................................................................2211.001.00---1.00---------------------------------------
................................................................ACCATCAGATTGTGAAA.........................................................................................................................................................................1711.001.00------------------------------1.00------------
..................................................................CATCAGATTGTGAAAAAAA.....................................................................................................................................................................1940.755.50-0.250.250.25---------------------------------------
..................................................................CATCAGATTGTGAAAAAAAA....................................................................................................................................................................2040.505.50---0.25------------0.25--------------------------
........................................................................................................GGACTCTCTTAAGGCAGCC...............................................................................................................................1940.250.25-------------------------------------0.25-----
..................................................................CATCAGATTGTGAAAAAT......................................................................................................................................................................1840.255.50----0.25--------------------------------------
........................................................................................................GGACTCTCTTAAGGC...................................................................................................................................1540.250.25------------------------------------0.25------
..................................................................CATCAGATTGTGAAAAAACC....................................................................................................................................................................2040.255.50----------------------------------0.25--------
..................................................................CATCAGATTGTGAAATC.......................................................................................................................................................................1790.228.00--------------------------------------0.22----
..................................................................CATCAGATTGTGAAAC........................................................................................................................................................................1690.118.00--0.11----------------------------------------
..................................................................CATCAGATTGTGAAATCTG.....................................................................................................................................................................1990.118.00----------------------------------------0.11--
..................................................................CATCAGATTGTGAAACCC......................................................................................................................................................................1890.118.00-----------------------------------------0.11-

Antisense strand
GGCAGTAATCCTAGTAATAGTCTTGCAAATTTTCATTTCAAGGCGCTGACAATTGCTAGCAAACACCATCAGATTGTGAAAATGGACCTGAGAAGTCGGTATCTGGACTCTCTTAAGGCTATTGTTTTTAAACAGTATAATCAGGTGAGCCAATCAGTGACTCTCTTTAAAGGTAAATCTTTATTTTCTCTTTGACACAGGAGTTAGAAGCTACTGGGAAAATCTACCTCCGACAAGAGGAGATCATTTT
...............................................................(((.........)))....(((.(((((((((((........)))).))))).))))).................................................................................................................................
..............................................................63........................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)
.............................................................................................................................................................................................................AGAAGCTACTGGGAACTG........................... 181.000.00--------------1.00----------------------------
..........................................................................................................................................AATCAGGTGAGCCAAGCA.............................................................................................. 181.000.00--------1.00----------------------------------
.............................................................................................................................................................................................................................ATCTACCTCCGACAAGCAAT......... 201.000.00----------1.00--------------------------------