ID: uc002fer.2_intron_5_0_chr16_75665488_r
GENE: (9)
chr16:75665438-75665640-


(1)
AGO3.ip 		(1)
B-CELL 		(7)
BRAIN 		(5)
BREAST 		(4)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(4)
LIVER 		(3)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
CTATGCAGACTATCACGATCTCATGGAAATCACGGAGAAGATGGTTTCAGGTGACTCCTGCTCTCTCTCATACTCATCGGGTGGTTGGTATGCTGCTTTCAGAGGAGGGCTGCCTGGATTTCATTCCCGCTAAATAACAGGTTTCTCTCCCAGGGATGGTGAAGCATATTACAGGCAGTTACAAGGTCACCTACCACCCAGAT
.........................................................(((........((((((.(((....))).)))))).......))).((((((..(((((.....................)))))..)))))).....................................................
.......................................................56...............................................................................................153................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................AATAACAGGTTTCTCTCCCAGT.................................................22131.009.009.0020.00--------------1.00-1.00-------------------------
....................................................................................................................................AATAACAGGTTTCTCTCCCAG..................................................2119.009.009.00-------------------------------------------
......AGACTATCACGATCTCATGGAAAT.............................................................................................................................................................................2413.003.00---3.00----------------------------------------
.............................TCACGGAGAAGATGGTTTTTTT........................................................................................................................................................223.000.00--1.00-2.00---------------------------------------
....................................................................................................................................AATAACAGGTTTCTCTCCTAA..................................................212.000.002.00-------------------------------------------
...............................ACGGAGAAGATGGTTTCAGGGATG....................................................................................................................................................242.000.00------------2.00-------------------------------
....................................................................................................................................AATAACAGGTTTCTCTCCCAGA.................................................2212.009.00------------------------------------1.001.00------
.....................................................................................................................................ATAACAGGTTTCTCTCCCAG..................................................2012.002.002.00-------------------------------------------
.....................................................................................................................................ATAACAGGTTTCTCTCCCAGT.................................................2112.002.001.00-----------------------------1.00-------------
..................................................................................................................................................................................TTACAAGGTCACCTACCACC.....2012.002.00--------------1.00-------------------1.00---------
.............CACGATCTCATGGAAATC............................................................................................................................................................................1812.002.00-----------2.00--------------------------------
.............................TCACGGAGAAGATGGTTTAGTT........................................................................................................................................................222.000.00----1.00------------------------------------1.00--
.............................TCACGGAGAAGATGGTTTTTT.........................................................................................................................................................212.000.00------1.00-------------1.00-----------------------
.............................TCACGGAGAAGATGGTTTTGTT........................................................................................................................................................221.000.00-----1.00--------------------------------------
..........................AAATCACGGAGAAGATGGT..............................................................................................................................................................1911.001.00-------------------------1.00------------------
.......................................................................................................................................................AGGGATGGTGAAGCATATTA................................2011.001.00------------------------------------------1.00-
......AGACTATCACGATCTCATGGAAATC............................................................................................................................................................................2511.001.00-------1.00------------------------------------
............................................................CTCTCTCTCATACTCATCGGGTGGT......................................................................................................................2511.001.00--------------------------------1.00-----------
.............................TCACGGAGAAGATGGTTTTGT.........................................................................................................................................................211.000.00--1.00-----------------------------------------
..........................................................................................................................................................GATGGTGAAGCATATTGGAG.............................201.000.00---------------------------------1.00----------
.............................TCACGGAGAAGATGGTATCA..........................................................................................................................................................201.000.00----------1.00---------------------------------
.....................CATGGAAATCACGGAGAAGATGGTTTCAG.........................................................................................................................................................2911.001.00-----------------------1.00--------------------
.......GACTATCACGATCTCATGGA................................................................................................................................................................................2011.001.00----------------------1.00---------------------
...........ATCACGATCTCATGGAAATCACGGAG......................................................................................................................................................................2611.001.00-------------1.00------------------------------
.............................TCACGGAGAAGATGGTTTATT.........................................................................................................................................................211.000.00--1.00-----------------------------------------
..............................................................................................................................................................................GCAGTTACAAGGTCACCTACCACC.....2411.001.00--------1.00-----------------------------------
...............................................................................GGTGGTTGGTATGCTGCTTTCAGAGGAGGGC.............................................................................................3111.001.00----------------------------------------1.00---
....................................................................................................................................AATAACAGGTTTCTCTCCCATT.................................................221.000.00-1.00------------------------------------------
............................................................................TCGGGTGGTTGGTATGCTGCTTT........................................................................................................2311.001.00-------------------------------1.00------------
......................................................................................................................................................CAGGGATGGTGAAGCATATT.................................2011.001.00--------------------------1.00-----------------
.............................TCACGGAGAAGATGGTTTTTAA........................................................................................................................................................221.000.00------1.00-------------------------------------
....................................................................................................AGAGGAGGGCTGCCTGGATTT..................................................................................2111.001.00--------------------------------------1.00-----
...........ATCACGATCTCATGGAAATCACGG........................................................................................................................................................................2411.001.00-----------------------------------1.00--------
.............................TCACGGAGAAGATGGTT.............................................................................................................................................................1711.001.00----------1.00---------------------------------
..............ACGATCTCATGGAAATCACGGAGAAGATGGC..............................................................................................................................................................311.000.00---------------------------1.00----------------
.......................................................................................................................................................AGGGATGGTGAAGCATAT..................................1811.001.00------------------------1.00-------------------
.............................TCACGGAGAAGATGGTTTTCC.........................................................................................................................................................211.000.00---------------1.00----------------------------
....................................................................................................................................AATAACAGGTTTCTCTCCCCGT.................................................2211.001.00---------------------1.00----------------------
.............................TCACGGAGAAGATGGTTTATTT........................................................................................................................................................221.000.00--1.00-----------------------------------------
......................ATGGAAATCACGGAGAAGA..................................................................................................................................................................1911.001.00-----------------1.00--------------------------
.............................................TTCAGGTGACTCCTGCTTG...........................................................................................................................................191.000.001.00-------------------------------------------
.............................TCACGGAGAAGATGGTTTCGTT........................................................................................................................................................221.000.00---------1.00----------------------------------
.....................................................................................................................................ATAACAGGTTTCTCTCCCAGA.................................................2111.002.00----------------------------1.00---------------
...........ATCACGATCTCATGGAAATCACGGA.......................................................................................................................................................................2511.001.00--------1.00-----------------------------------
.........................................................................................................................................................................TACAGGCAGTTACAAGGTCACCTACC........2611.001.00---------------------------------------1.00----
..........................................................................................................................................................GATGGTGAAGCATATTACAGGCAGTTA......................2711.001.00---------1.00----------------------------------
........................................................................................TATGCTGCTTTCAGAGGAGG...............................................................................................2011.001.00-------1.00------------------------------------
....................................................................................................................................AATAACAGGTTTCTCTCCC....................................................1911.001.001.00-------------------------------------------
....................................................................................................AGAGGAGGGCTGCCTGGAT....................................................................................1911.001.00-----1.00--------------------------------------
....................TCATGGAAATCACGGA.......................................................................................................................................................................1620.500.50-------------------------------------------0.50

Antisense strand
CTATGCAGACTATCACGATCTCATGGAAATCACGGAGAAGATGGTTTCAGGTGACTCCTGCTCTCTCTCATACTCATCGGGTGGTTGGTATGCTGCTTTCAGAGGAGGGCTGCCTGGATTTCATTCCCGCTAAATAACAGGTTTCTCTCCCAGGGATGGTGAAGCATATTACAGGCAGTTACAAGGTCACCTACCACCCAGAT
.........................................................(((........((((((.(((....))).)))))).......))).((((((..(((((.....................)))))..)))))).....................................................
.......................................................56...............................................................................................153................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................CCTGGATTTCATTCCCGGAA....................................................................... 201.000.00-------------------1.00------------------------
......................................................................................................................TTTCATTCCCGCTAAATAGG................................................................. 201.000.00-1.00------------------------------------------
................................................AGGTGACTCCTGCTCCTGA........................................................................................................................................ 191.000.00-----------------------------1.00--------------