ID: uc002eyl.1_intron_0_0_chr16_70253699_r
GENE: LOC729513(5)
chr16:70253649-70253864-


(2)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(15)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTACGTTCATGTAAACAGCATGATGTGAGGCCATGGATGCAGGCAGTAAGGTATACTATGTACCAGAATCAGTTGTTGGAGAAAAATTAAAGTTAAGTGGTTTTCCTTTTTTTTTTTGTAAGAGAAAATTAAAGGTGTTTTTTTTTTTAAATTTTGCTTTATTGAGGTTTATATTACACATTCTAAGTGTATGGTTTGATGAGTTCTAACATGTCT
.............................................................................((((((..(((.......)))..))))))........((((.((((((((((.......)))))))))).)))).................................................................
.....................................................................70...................................................................................155...........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)
..........................................................................GTTGGAGAAAAATTAAAG............................................................................................................................1816.006.00------2.001.00---1.00-1.00---1.00-----------------------------
....................................................................TCAGTTGTTGGAGAAGTTA.................................................................................................................................195.000.00-5.00---------------------------------------------
....................................................................TCAGTTGTTGGAGAAGTT..................................................................................................................................184.000.00-4.00---------------------------------------------
.................................TGGATGCAGGCAGTAAG......................................................................................................................................................................1713.003.00-----3.00-----------------------------------------
...................................................................................................................................AAGGTGTTTTTTTTTTTGAC.................................................................203.000.003.00----------------------------------------------
...................................................................................................................................AAGGTGTTTTTTTTTTCGAC.................................................................202.000.002.00----------------------------------------------
...................................................................ATCAGTTGTTGGAGAAGTTA.................................................................................................................................202.000.00-1.00-------------1.00-------------------------------
...........................................................................TTGGAGAAAAATTAAAG............................................................................................................................1741.251.25--------------------0.250.50-----0.25---0.25---------------
....................................................................TCAGTTGTTGGAGAAGTTT.................................................................................................................................191.000.00-1.00---------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTTTTTCTTG................................................................................................251.000.001.00----------------------------------------------
....................................................................................................TTTTCCTTTTTTTTTTTGTCATG.............................................................................................231.000.00--1.00--------------------------------------------
.................................................................................................TGGTTTTCCTTTTTTTTTTTGTAAGAG............................................................................................2711.001.00--1.00--------------------------------------------
..............................................................................................AAGTGGTTTTCCTTTTTATG......................................................................................................201.000.001.00----------------------------------------------
....................................................................................................TTTTCCTTTTTTTTTTTGGATG..............................................................................................221.000.00--1.00--------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTTTTTTGTAAGAG............................................................................................2911.001.001.00----------------------------------------------
....................................................................................................TTTTCCTTTTTTTTTTTGTCGTG.............................................................................................231.000.001.00----------------------------------------------
....................................................................................................................................................................AGGTTTATATTACACATTCCAC..............................221.000.00---1.00-------------------------------------------
..........................................................................................................................................TTTTTTTTTTAAATTTTGCTTTATCGAG..................................................281.000.00---1.00-------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTTTTTTGC.................................................................................................241.000.00--1.00--------------------------------------------
.....................................................................................................TTTCCTTTTTTTTTTTGTAAG..............................................................................................2111.001.00--1.00--------------------------------------------
........................................................................TTGTTGGAGAAAAATTAAA.............................................................................................................................1911.001.00--------------1.00--------------------------------
.................................TGGATGCAGGCAGTAAGGTATACTATGTA..........................................................................................................................................................2911.001.00--------1.00--------------------------------------
........................................................................................................CCTTTTTTTTTTTGTGGCG.............................................................................................191.000.00----1.00------------------------------------------
.....................................................................................................TTTCCTTTTTTTTTTTGCTGG..............................................................................................211.000.001.00----------------------------------------------
.......................................................................................................TCCTTTTTTTTTTTGTGGT..............................................................................................191.000.001.00----------------------------------------------
.................................................................GAATCAGTTGTTGGAGAAAAATTAAAG............................................................................................................................2711.001.00----------------1.00------------------------------
.................................................................................................TGGTTTTCCTTTTTTTTTGTA..................................................................................................211.000.00--1.00--------------------------------------------
........................................................................................................CCTTTTTTTTTTTGTGGGG.............................................................................................191.000.00----1.00------------------------------------------
........................................................................................................CCTTTTTTTTTTTGTGGCC.............................................................................................191.000.00----1.00------------------------------------------
.....................................................................................................TTTCCTTTTTTTTTTTGTATATG............................................................................................231.000.00---1.00-------------------------------------------
....................................................................................................TTTTCCTTTTTTTTTTTGGGC...............................................................................................211.000.001.00----------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTTTTTTGTA................................................................................................2511.001.00--1.00--------------------------------------------
.........................................................................................................................................TTTTTTTTTTTAAATTTTGCTTTATCGAG..................................................291.000.00---1.00-------------------------------------------
....................................................................................................TTTTCCTTTTTTTTTTTGGACG..............................................................................................221.000.001.00----------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTTTTTTCGTA...............................................................................................261.000.001.00----------------------------------------------
....................................................................................................TTTTCCTTTTTTTTTTTGCC................................................................................................201.000.00--1.00--------------------------------------------
........................................................................................................CCTTTTTTTTTTTGTGCCC.............................................................................................191.000.00----1.00------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTTA......................................................................................................191.000.001.00----------------------------------------------
......................................................................................................................................................ATTTTGCTTTATTGAGGTTTACATT.........................................251.000.00--1.00--------------------------------------------
.......................................................................................................................................TGTTTTTTTTTTTAAATTTTGCTTTATCGAG..................................................311.000.00---1.00-------------------------------------------
...................................................................ATCAGTTGTTGGAGAAGT...................................................................................................................................181.000.00-1.00---------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTTTTTTCCTG...............................................................................................261.000.001.00----------------------------------------------
.................................................................................................TGGTTTTCCTTTTTTTTTGTTC.................................................................................................221.000.00----------1.00------------------------------------
...................................................................................................................................AAGGTGTTTTTTTTTTTGGTC................................................................211.000.00--1.00--------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTCTTG....................................................................................................211.000.001.00----------------------------------------------
.................................................................................................TGGTTTTCCTTTTTTTTTTTG..................................................................................................2130.670.670.67----------------------------------------------
.................................................GGTATACTATGTACCAGAATCAGTTGTTG..........................................................................................................................................2920.500.50----------------------0.50------------------------
.............................................................ACCAGAATCAGTTGTTGGAGAA.....................................................................................................................................2280.380.38------------------------0.38----------------------
..................................GGATGCAGGCAGTAAG......................................................................................................................................................................1630.330.33--------------------0.33--------------------------
....................................................................................AATTAAAGTTAAGTGGTTTTCCTTTT..........................................................................................................2660.330.33-------------------0.33---------------------------
..................................................................................AAAATTAAAGTTAAGTGGTTTTCCTT............................................................................................................2670.290.29-------------------0.29---------------------------
...........................................................................................................................................................................................TGTATGGTTTGATGAGTTCTAAC......2380.250.25------------------------------0.25----------------
.............................................................ACCAGAATCAGTTGTTG..........................................................................................................................................1780.250.25--------------------------0.12-------------0.12------
...............................................................................................................................................................................................TGGTTTGATGAGTTCTAACA.....2080.250.25-------0.25---------------------------------------
...............................................................CAGAATCAGTTGTTGGAGA......................................................................................................................................1980.250.25--------------------------------0.12------0.12-------
...............................................................................................AGTGGTTTTCCTTTTTTTTTGTA..................................................................................................2380.250.120.12-0.12--------------------------------------------
............................................................................................................................................TTTTTTTTAAATTTTGCTTTATTGAGG.................................................2740.250.250.25----------------------------------------------
...............................................................................................AGTGGTTTTCCTTTTTTTTTCGTA.................................................................................................2480.250.120.25----------------------------------------------
........................................................................................................................................................................................AAGTGTATGGTTTGATGAGTTC..........2280.250.25-----------------------------------------0.12----0.12
...................................................................................................................................................TAAATTTTGCTTTATTGAGGTT...............................................2250.200.20---------------------------------0.20-------------
.............................................................................................................................................TTTTTTTAAATTTTGCTTTATTGAGG.................................................2650.200.20--0.20--------------------------------------------
............................................................................................TTAAGTGGTTTTCCTTTTTTTTTTT...................................................................................................2560.170.17---0.17-------------------------------------------
............................................................................................TTAAGTGGTTTTCCTTTTTTT.......................................................................................................2160.170.17-----------------------------------0.17-----------
............................................................................................TTAAGTGGTTTTCCTTTTTTTTTT....................................................................................................2460.170.17----------------------------------0.17------------
..............................................................................................AAGTGGTTTTCCTTTTTTTTTCTTG.................................................................................................2570.140.140.14----------------------------------------------
...................................................................................AAATTAAAGTTAAGTGGTT..................................................................................................................1970.140.14------0.14----------------------------------------
..............................................................................................AAGTGGTTTTCCTTTTTTTTT.....................................................................................................2170.140.14--0.14--------------------------------------------
..................................................................................................................................................................................CATTCTAAGTGTATGG......................1680.120.12-----------------------------0.12-----------------
.........................................................................................................................................................................TATATTACACATTCTAAG.............................1880.120.12--------------------------0.12--------------------
................................................................AGAATCAGTTGTTGGAGAAA....................................................................................................................................2080.120.12-------------------------------------0.12---------
...................................................................................................................................................................................ATTCTAAGTGTATGGTTTGATGAGTT...........2680.120.12-------------------------0.12---------------------
..........................................................TGTACCAGAATCAGTTGTTGG.........................................................................................................................................2180.120.12-----------------------------0.12-----------------
...................................................................................................................................................................................ATTCTAAGTGTATGGTTTGATGA..............2380.120.12-------------------------0.12---------------------
.......................................................................................................................................................................................TAAGTGTATGGTTTGATGAGTTC..........2380.120.12--------------------------------0.12--------------
...............................................................CAGAATCAGTTGTTGGAGAA.....................................................................................................................................2080.120.12-------------------------------------------0.12---
....................................................................................................................................................................................TTCTAAGTGTATGGTTTGATGAGTT...........2580.120.12-------------------------0.12---------------------
...............................................................CAGAATCAGTTGTTGGAGAAA....................................................................................................................................2180.120.12------------------------------------0.12----------
......................................................................................................................................................................................CTAAGTGTATGGTTTGATGAGT............2280.120.12----------------------------0.12------------------
...............................................................................................AGTGGTTTTCCTTTTTTTTT.....................................................................................................2080.120.120.12----------------------------------------------
..............................................................................................................................................................................................ATGGTTTGATGAGTTCTA........1880.120.12---------------------------------------------0.12-
...............................................................................................................................................................................................TGGTTTGATGAGTTCTAAC......1980.120.12----------------------------0.12------------------
......................................................................................................................................................................................CTAAGTGTATGGTTTGATGAGTTCTAACA.....2980.120.12--------------------------------------------0.12--
.............................................................ACCAGAATCAGTTGTTGGAGA......................................................................................................................................2180.120.12--------------------------------------0.12--------
..............................................................CCAGAATCAGTTGTTGG.........................................................................................................................................1790.110.11--------------------------0.11--------------------

Antisense strand
TTACGTTCATGTAAACAGCATGATGTGAGGCCATGGATGCAGGCAGTAAGGTATACTATGTACCAGAATCAGTTGTTGGAGAAAAATTAAAGTTAAGTGGTTTTCCTTTTTTTTTTTGTAAGAGAAAATTAAAGGTGTTTTTTTTTTTAAATTTTGCTTTATTGAGGTTTATATTACACATTCTAAGTGTATGGTTTGATGAGTTCTAACATGTCT
.............................................................................((((((..(((.......)))..))))))........((((.((((((((((.......)))))))))).)))).................................................................
.....................................................................70...................................................................................155...........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)
.........................................................................................................................................TTTTTTTTTTTAAATTTTGGCT......................................................... 221.000.00---------1.00-------------------------------------
...................................................................ATCAGTTGTTGGAGAAGCT.................................................................................................................................. 191.000.00------------1.00----------------------------------
...............................................................................AGAAAAATTAAAGTTTTCG...................................................................................................................... 191.000.001.00----------------------------------------------
...............................................................................AGAAAAATTAAAGTTATTA...................................................................................................................... 191.000.00------------------1.00----------------------------
..............................................................................GAGAAAAATTAAAGTTAATCA..................................................................................................................... 211.000.00---1.00-------------------------------------------
........................................................................................................................AGAGAAAATTAAAGGTGTCTCC.......................................................................... 221.000.00---1.00-------------------------------------------
............................................................................ACTTTAATTTTTCTCCA........................................................................................................................... 1730.330.33---0.33-------------------------------------------
.....................................................................................................................................................................................TTAGAACTCATCAAACCATACACTTAGA....... 2880.120.12-----------------------0.12-----------------------
.....................................................................................................................................................................................TAGAACTCATCAAACCATACACTTAGA........ 2780.120.12-----------------------0.12-----------------------
............................................................................................................................................................................................AGACATGTTAGAACTCATCAAACCATAC 2880.120.12-----------------------0.12-----------------------
..........................................................................................................................................................................................ACATGTTAGAACTCATCAAACCATACAC.. 2880.120.12-----------------------0.12-----------------------
............................................................CTCCAACAACTGATTCTGGTA....................................................................................................................................... 2180.120.12------------------------------------------0.12----