| (2) B-CELL | (2) BRAIN | (1) BREAST | (9) CELL-LINE | (1) CERVIX | (1) HEART | (1) HELA | (1) KIDNEY | (2) LIVER | (2) OTHER | (4) SKIN | (1) XRN.ip |
| CAACCCAGAATGTTCCAAATCATACCTTTTTCATCTTGATTCTCCTAGATTTTACAACAAATCATAGTGACAATACCAGTTCCATTTTGCCTCCAATTCAGTTGATTATATATTTTTTCTATTTATTTCTCATTTTATAATTGATATCTGGAATAATCAGCAGCTCTTTTCTCATTTATTTTCTCATATTTTTATTCCAGGATTTGCCTCTGAAGCAGGGAGTGTCTGCATTAAAAATGACCTGTAGTTC .......................................................................................................((((((........((((..((((...............))))..))))))))))............................................................................................ .......................................................................................................104................................................................................187............................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189784 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR189787 | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR095854(SRX039177) "miRNA were isolated from FirstChoice Human B. (brain) | TAX577739(Rovira) total RNA. (breast) | SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM450603(GSM450603) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033732(GSM497077) bjab cell line (bjab103). (B cell) | SRR390723(GSM850202) total small RNA. (cell line) | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR040035(GSM532920) G001T. (cervix) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................CTCTTTTCTCATTTATTTTC................................................................... | 20 | 1 | 82.00 | 82.00 | 36.00 | 31.00 | 3.00 | - | 7.00 | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................CTCTTTTCTCATTTATTTCC................................................................... | 20 | 17.00 | 0.00 | 9.00 | 3.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................CTCTTTTCTCATTTATTTTCTCATAT............................................................. | 26 | 1 | 5.00 | 5.00 | 1.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................CTCTTTTCTCATTTATCTTC................................................................... | 20 | 4.00 | 0.00 | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................ATTATATATTTTTTCTATTTATTTCTCA...................................................................................................................... | 28 | 1 | 4.00 | 4.00 | - | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................CAGCTCTTTTCTCATTTATTTTC................................................................... | 23 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................CCTCTGAAGCAGGGAGTGTCTGT..................... | 23 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | |
| ................................................................................................................TTTTTTCTATTTATTTCTCATTTCATG............................................................................................................... | 27 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................ATTTGCCTCTGAAGCAGGGAGTGTCTGC..................... | 28 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................TCATACCTTTTTCATCAGGA................................................................................................................................................................................................................... | 20 | 2.00 | 0.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................CATTTATTTTCTCATATTTTTATTCCAG.................................................. | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTTGCCTCTGAAGCAGGGAGTGTCTGC..................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................TTTTCTCATTTATTTTCTAAG............................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................ACCTTTTTCATCTTGATTCGTG............................................................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................TTGCCTCTGAAGCAGGGAGCGTC........................ | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................CTCTTTTCTCATTTATCTCC................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................ATCAGCAGCTCTTTTCTCATTTA........................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TTGCCTCTGAAGCAGGGAGTGTCCGC..................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TGCCTCTGAAGCAGGGAGTGTCTG...................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .........................................................................................................................................................................................................ATTTGCCTCTGAAGCAGGGAGTGT......................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................ATTCCAGGATTTGCCTCTGAAGCAGGG.............................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................TATATTTTTTCTATTTATTGACT....................................................................................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................AGGATTTGCCTCTGAAGCAGGGAGTGT......................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................ATTATATATTTTTTCTATTAG............................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................TGCCTCTGAAGCAGGGAGTGTCT....................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .............................................................................................................ATATTTTTTCTATTTATTTCTCATTTCATG............................................................................................................... | 30 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................ATTTGCCTCTGAAGCAGGGAGTG.......................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TCATATTTTTATTCCCAAG................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................CATACCTTTTTCATCAGGA................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................TCTGAAGCAGGGAGTGTC........................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...........................................................................................................................................................................................................TTGCCTCTGAAGCAGGGAGTGTC........................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................AGGATTTGCCTCTGAAGCAGGGAGTGTCCGC..................... | 31 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................ATTTTTTCTATTTATTTCTCATTTTATAATTT........................................................................................................... | 32 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................TCTGGAATAATCAGCAGCTCTTT................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TCTGGAATAATCAGCAGCTCTTTTCT.............................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................CTGAAGCAGGGAGTGTAGGG..................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................AGGATTTGCCTCTGAAGCAGGG.............................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATTTATTTTCTCATATTTTTATTCCAG.................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATTTATTTTCTCATATTTACAG....................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................ATTGATATCTGGAATAATCAGCAGCTCTTTCTC.............................................................................. | 33 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................GATTTGCCTCTGAAGCAGGGAGTG.......................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .........................................................................................................................................................................TCTCATTTATTTTCTCCTTG............................................................. | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................CTCTTTTCTCATTTATTTTCTCACAT............................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................TCAGCAGCTCTTTTCTCATTTATTTTCT.................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................ATATATTTTTTCTATTTATTTCTCATTTCATG............................................................................................................... | 32 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................ATTTGCCTCTGAAGCAGGGAGTGTCTGCA.................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................ATTATATATTTTTTCTATTTATTTCTCATTTCATG............................................................................................................... | 35 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................TGCCTCTGAAGCAGGGAGTGTCCGC..................... | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................AATAATCAGCAGCTCTTTTC............................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................TTTCTCATTTATTTTCTCATAT............................................................. | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................CTCATTTATTTTCTCATATTTTTATTCCAG.................................................. | 30 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................GGAATAATCAGCAGCTCTTTTCT.............................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................AGGATTTGCCTCTGAAGCAGGGAG............................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................TATTTTTTCTATTTATTTCTCATTTCATA............................................................................................................... | 29 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................ATATATTTTTTCTATTTATTTCTCATTTTAT................................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................TCTTTTCTCATTTATTTTC................................................................... | 19 | 6 | 0.50 | 0.50 | 0.33 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................CTCATATTTTTATTCCAG.................................................. | 18 | 2 | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................CTTTTCTCATTTATTTTC................................................................... | 18 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CAACCCAGAATGTTCCAAATCATACCTTTTTCATCTTGATTCTCCTAGATTTTACAACAAATCATAGTGACAATACCAGTTCCATTTTGCCTCCAATTCAGTTGATTATATATTTTTTCTATTTATTTCTCATTTTATAATTGATATCTGGAATAATCAGCAGCTCTTTTCTCATTTATTTTCTCATATTTTTATTCCAGGATTTGCCTCTGAAGCAGGGAGTGTCTGCATTAAAAATGACCTGTAGTTC .......................................................................................................((((((........((((..((((...............))))..))))))))))............................................................................................ .......................................................................................................104................................................................................187............................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189784 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR189787 | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR095854(SRX039177) "miRNA were isolated from FirstChoice Human B. (brain) | TAX577739(Rovira) total RNA. (breast) | SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM450603(GSM450603) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033732(GSM497077) bjab cell line (bjab103). (B cell) | SRR390723(GSM850202) total small RNA. (cell line) | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR040035(GSM532920) G001T. (cervix) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................CAGCAGCTCTTTTCTCGTGC......................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| .............................................................................................................................................................CAGCAGCTCTTTTCTCTTT.......................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TCATTTATTTTCTCACAGG............................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |