ID: uc002exg.1_intron_2_0_chr16_69482048_f.3p
GENE: CYB5B(3)
chr16:69492796-69493045+


(1)
AGO2.ip
(12)
CELL-LINE
(1)
CERVIX
(3)
OTHER
(1)
SKIN

Sense strand
AAGTGCCAGTATGTTATCAGAAATAAAATTCCCAGTCTATCCATTGCTTATATATTTGTAAACACCAAAATGCATGAAAGATGAAGTTCTGGTATCAGTTACAGGGTTGACATAGCTTGATCAAGAAAATGTACATGTGCTATGTTAATCTTCTTTCTTTTTGTTTGTTATTTTTGAATTTTTTTTTTTTTTTATTTCAGGACCCTTCAAAAAATGATACATGCAAAAGGTTAGTATCTCCTTAACAGCT

....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782SRR189784GSM532876(GSM532876)
G547T. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.........................................................................................................................................TGCTATGTTAATCTTCTTTCTTT..........................................................................................23113.0013.0013.00----------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCGG..................................................226.000.00-1.002.00-3.00------------
.........................................................................................................................................TGCTATGTTAATCTTCTTTCTCT..........................................................................................236.000.006.00----------------
.........................................................................................................................................TGCTATGTTAATCTTCTTTCCTT..........................................................................................236.000.006.00----------------
.........................................................................................................................................TGCTATGTTAATCTTCTT...............................................................................................1814.004.004.00----------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTTATG.................................................242.000.00--2.00--------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTAG...................................................222.000.00----1.001.00-----------
...........................................................................................................................................CTATGTTAATCTTCTTTCTTT..........................................................................................2112.002.002.00----------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTATG..................................................232.000.001.00-1.00--------------
.......................................................................................................................................................TCTTTCTTTTTGTTTGTTATTT.............................................................................2212.002.00-1.00-1.00-------------
.......................................................................................................................................................................TTATTTTTGAATTTTTTTTTTATTT..........................................................252.000.002.00----------------
.........................................................................................................................................TGCTATGTTAATCTTCTTTCTTC..........................................................................................232.000.002.00----------------
..................................................................................................................................................AATCTTCTTTCTTTTTGTTTGTTATTT.............................................................................2711.001.00---1.00-------------
.........................................................................................................................................................................................TTTTTTTTATTTCAGGACCC.............................................2011.001.00---1.00-------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTATAG.................................................241.000.00------1.00----------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTATTG.................................................241.000.00----1.00------------
..............................................................................................................................................TGTTAATCTTCTTTCTTT..........................................................................................1811.001.00-1.00---------------
...................................................................................................................................................ATCTTCTTTCTTTTTGTTTGTTATTTTTGA.........................................................................3011.001.00-1.00---------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCGGAG................................................241.000.00-1.00---------------
.....................................................................................................................................................................................TTTTTTTTTTTTATTTCGGAG................................................211.000.00-1.00---------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTATAT..................................................231.000.00--1.00--------------
................................................................................................................................................................................AATTTTTTTTTTTTTTTATTTCAGGACCC.............................................2911.001.00-1.00---------------
................................................................................................................................................TTAATCTTCTTTCTTTTTGTTTGTTATTTTTG..........................................................................3211.001.00------1.00----------
..............................................................................................................................................................TTTTGTTTGTTATTTTACTT........................................................................201.000.001.00----------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCGGG.................................................231.000.00-1.00---------------
.......................................................................................................................................................................TTATTTTTGAATTTTTTTTTTTTTTTAATG.....................................................301.000.001.00----------------
..............................................................................................................................................................................TGAATTTTTTTTTTTTTTTATTCAG...................................................251.000.00---1.00-------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCGAGC................................................241.000.00---1.00-------------
...................................................................................................................................................................................TTTTTTTTTTTTTTATTTCGCCC................................................231.000.00-1.00---------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCAAAAA...............................................251.000.00-1.00---------------
.........................................................................................................................................TGCTATGTTAATCTTCTTTCTC...........................................................................................221.000.001.00----------------
...............................................................................................................................................................TTTGTTTGTTATTTTTGAATTTTTTTTTTT.............................................................3011.001.00-1.00---------------
.............................................................................................................................................ATGTTAATCTTCTTTCTTT..........................................................................................1911.001.00-1.00---------------
..................................................................................................................................................AATCTTCTTTCTTTTTGTTTGTTATTTTTGA.........................................................................3111.001.00-1.00---------------
...................................................................................................................................................................................TTTTTTTTTTTTTTATTTCAAAT................................................231.000.00----1.00------------
................................................................................................................................................................................AATTTTTTTTTTTTTTTATTTTTCT.................................................251.000.00--1.00--------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCCGGT................................................241.000.00------------1.00----
....................................................................................................................................................................................TTTTTTTTTTTTTATTTCGGCC................................................221.000.00-1.00---------------
......................................................................................................................................................TTCTTTCTTTTTGTTTGTTTACT.............................................................................231.000.00-1.00---------------
...................................................................................................................................................................................TTTTTTTTTTTTTTATTTCATTTG...............................................241.000.00-----1.00-----------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTACG..................................................231.000.00-----1.00-----------
.............................................................................AAGATGAAGTTCTGGTATCAGTCAC....................................................................................................................................................251.000.00-1.00---------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATAATG...................................................221.000.00--1.00--------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTAGG...................................................221.000.00--1.00--------------
...........................................................................................................................................................................TTTTGAATTTTTTTTTTGTC...........................................................201.000.00--------1.00--------
...............................................................................................................................................................................GAATTTTTTTTTTTTTTTATC......................................................211.000.00----------1.00------
......................................................................................................................................................................................TTTTTTTTTTTATTTCAGGACC..............................................2211.001.00-1.00---------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTTCTT.................................................241.000.00------1.00----------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTCCAG.................................................241.000.00-1.00---------------
..............................................................................................................................................................................TGAATTTTTTTTTTTTTTTATTTCAGG.................................................2711.001.00-1.00---------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTAAAA..................................................231.000.00----1.00------------
...................................................................................................................................................................................TTTTTTTTTTTTTTATTTCGGAG................................................231.000.00-1.00---------------
.......AGTATGTTATCAGAAC...................................................................................................................................................................................................................................161.000.00-------------1.00---
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTATTG..................................................231.000.00--1.00--------------
.......................................................................................................................................................................................TTTTTTTTTTATTTCAGGACCCTTC..........................................2511.001.00---1.00-------------
........................................................TGTAAACACCAAAATCCGG...............................................................................................................................................................................191.000.00--------1.00--------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTTAAG.................................................241.000.00--1.00--------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCCG..................................................221.000.001.00----------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTATG...................................................221.000.00----1.00------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTGTGA..................................................231.000.00---1.00-------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTACTT.................................................241.000.00-----1.00-----------
................................................................................................................................................................................AATTTTTTTTTTTTTTTATTTAAAA.................................................251.000.00-----1.00-----------
....................................................................................................................................................................................TTTTTTTTTTTTTATTTCAATG................................................221.000.00----1.00------------
........................................................................................................................................................................................TTTTTTTTTATTTCAGGACCCTTC..........................................2411.001.00---1.00-------------
...................................................................................................................................................................................TTTTTTTTTTTTTTATTTCACCCC...............................................241.000.00-1.00---------------
......................................................................................................................................ATGTGCTATGTTAATCTTCTTTCTTT..........................................................................................2611.001.00---1.00-------------
................................................................................................................................................................................AATTTTTTTTTTTTTTTATTATG...................................................231.000.00--1.00--------------
........................................................TGTAAACACCAAAATCAG................................................................................................................................................................................181.000.00---------1.00-------
.......................................................................................................................................................................................TTTTTTTTTTATTTCAGGACC..............................................2111.001.00-1.00---------------
................................................................................................................................................................................AATTTTTTTTTTTTTTTATTAAAT..................................................241.000.001.00----------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCAACAG...............................................251.000.001.00----------------
................................................................................................................................................................................AATTTTTTTTTTTTTTTATTTCAGGACCCTCC..........................................321.000.00---1.00-------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTGGG..................................................231.000.00-1.00---------------
..........................................................................................................................................................TTCTTTTTGTTTGTTATTTCTGA.........................................................................231.000.00---1.00-------------
................................................................................................................................................................................AATTTTTTTTTTTTTTTATTTCAG..................................................2420.500.50------0.50----------
....................................................................................................................................................................................TTTTTTTTTTTTTATTTCAGG.................................................2150.400.40-0.40---------------
...................................................................................................................................................................................TTTTTTTTTTTTTTATTTCAG..................................................2180.380.38--0.12---0.25----------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCAGG.................................................2330.330.33---0.33-------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTCA...................................................2230.330.33--0.33--------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTCAACG................................................2530.330.33----0.33------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTCAAG.................................................2430.330.33----0.33------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTCAGAG................................................2530.330.33----0.33------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTCATTG................................................2530.330.33----0.33------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTATTTCAG..................................................2330.330.33------0.33----------
..................................................................................................................................................................................TTTTTTTTTTTTTTTATTTCAG..................................................2260.170.17--0.17--------------
........................................................................................................................................................................TATTTTTGAATTTTTTTTTTT.............................................................2170.140.14-0.14---------------
.....................................................................................................................................................................................................................ATGATACATGCAAAAG.....................1680.120.12----------------0.12

Antisense strand
AAGTGCCAGTATGTTATCAGAAATAAAATTCCCAGTCTATCCATTGCTTATATATTTGTAAACACCAAAATGCATGAAAGATGAAGTTCTGGTATCAGTTACAGGGTTGACATAGCTTGATCAAGAAAATGTACATGTGCTATGTTAATCTTCTTTCTTTTTGTTTGTTATTTTTGAATTTTTTTTTTTTTTTATTTCAGGACCCTTCAAAAAATGATACATGCAAAAGGTTAGTATCTCCTTAACAGCT

....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782SRR189784GSM532876(GSM532876)
G547T. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
..................................................................................................................................................................................AAATAAAAAAAAAAAAAAA..................................................... 1904.004.00-------3.00---1.00-----
.................................................................................................................................................................TGTTTGTTATTTTTGAATG...................................................................... 191.000.00--------1.00--------
....GCCAGTATGTTATCATCAC................................................................................................................................................................................................................................... 191.000.00---------1.00-------
.........................................................................GAACTTCATCTTTCAT................................................................................................................................................................. 1670.290.29--------------0.29--
...........................................................................................................................GCACATGTACATTTTCT.............................................................................................................. 1740.250.25---------0.25-------
.................................................................................................................................................................................GAAATAAAAAAAAAAAAAAAT.................................................... 2170.140.14---------------0.14-