ID: uc002evx.1_intron_1_0_chr16_68349978_f.3p
GENE: (2)
chr16:68355129-68355378+


(4)
BRAIN
(7)
BREAST
(22)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER
(9)
SKIN
(1)
XRN.ip

Sense strand
ACCACTGTACTCCAGCCTGGGTGATGGGGTGAGACCCTGTCTCAAAAAAAAAAAAATAAATAAAGATAAAAGACAACCAAAAAATAGTTTAAAATAGATGACACGTTTGTTCTATCTGTTTAGCAATGTGTTTATATATGTGAATACTCTTGTGTGTTGATGTGTATCATGCAAAGGTTACTGACTTTTTTGTTTTTTAGGTCATCTTATGCAGATATGCTACATGACAAAGACAGAGTAAGTGTAAAAG
..................................................((((((((((.((((.....((..((((........(((..((((((((((((....))))..)))))))))))..(((((..((((((((.(((((......))))).)))))))).)))))..)))).))..))))))))))))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
................................................................................................................................................................................GTTACTGACTTTTTTGTTTTTTAGA.................................................25145.0026.0034.00-8.00-------1.00----------1.00----------------------1.00----
...............................................................................................................................................................................GGTTACTGACTTTTTTGTTTTTTAGA.................................................26126.0020.0017.00-2.00-------1.002.00-----1.00------1.00--------------1.00---1.00-----
................................................................................................................................................................................GTTACTGACTTTTTTGTTTTTTAG..................................................24126.0026.004.00-7.00------6.00--1.00--1.002.00---1.00-------1.001.00-------1.00-------1.00---
...............................................................................................................................................................................GGTTACTGACTTTTTTGTTTTTTAG..................................................25120.0020.0013.00-3.00---------1.00--1.00----------------1.00---------1.00------
................................................................................................................................................................................GTTACTGACTTTTTTGTTTTTTAGG.................................................2517.007.007.00------------------------------------------------
..............................................................................................................................................................................AGGTTACTGACTTTTTTGTTTTTTAG..................................................2616.006.004.00-1.00--------------------------------------1.00-------
...........................................AAAAAAAAAAAAATAAATAGTT.........................................................................................................................................................................................225.000.00-------------1.00-----------1.00-1.00-----1.00------------1.00--
..............................................................................................................................................................................AGGTTACTGACTTTTTTGTTTTTTAGA.................................................2715.006.005.00------------------------------------------------
................................................................................................................................................................................GTTACTGACTTTTTTGTTTTTTAGAA................................................2613.0026.001.00-2.00----------------------------------------------
...............................................................................................................................................................................GGTTACTGACTTTTTTGTTTTTTAGAA................................................2712.0020.001.00------------------------------1.00-----------------
...............................................................................................................................................................................GGTTACTGACTTTTTTGTTTTTTATA.................................................262.000.00----------1.001.00-------------------------------------
...........................................AAAAAAAAAAAAATAAATAGTA.........................................................................................................................................................................................222.000.00--------------1.00---------------1.00------------------
................................................................................................................................................................................GTTACTGACTTTTTTGTTTTTTAT..................................................242.000.00----------1.00-----------1.00--------------------------
...........................................AAAAAAAAAAAAATAAATAGTTA........................................................................................................................................................................................231.000.00-----------------------------------------------1.00-
...............................................................................................................................................................................GGTTACTGACTTTTTTGTTTTCTAG..................................................251.000.00-------------------1.00-----------------------------
...........................................AAAAAAAAAAAAATAAATTTGA.........................................................................................................................................................................................221.000.00------------------1.00------------------------------
..........................................CAAAAAAAAAAAAATAAATATTAC........................................................................................................................................................................................241.000.00----------------------------------------1.00--------
............................................AAAAAAAAAAAATAAATACAC.........................................................................................................................................................................................211.000.00--------------------------1.00----------------------
........................................................TAAATAAAGATAAAAGAAAGT.............................................................................................................................................................................211.000.00--------------1.00----------------------------------
................................................................................................................................................................................GTTACTGACTTTTTTGTTTTTTATAA................................................261.000.00-----------1.00-------------------------------------
...........................................................................................................................................................................................TTTTGTTTTTTAGGTCTCTT...........................................201.000.00-------1.00-----------------------------------------
....................................................................................................ACACGTTTGTTCTATCAGAC..................................................................................................................................201.000.00--------------------------------------1.00----------
............................................AAAAAAAAAAAATAAATCACG.........................................................................................................................................................................................211.000.00------------------------------------1.00------------
......................................................................................................................................................................................GACTTTTTTGTTTTTTAG..................................................1830.330.33------------------------------------------------0.33

Antisense strand
ACCACTGTACTCCAGCCTGGGTGATGGGGTGAGACCCTGTCTCAAAAAAAAAAAAATAAATAAAGATAAAAGACAACCAAAAAATAGTTTAAAATAGATGACACGTTTGTTCTATCTGTTTAGCAATGTGTTTATATATGTGAATACTCTTGTGTGTTGATGTGTATCATGCAAAGGTTACTGACTTTTTTGTTTTTTAGGTCATCTTATGCAGATATGCTACATGACAAAGACAGAGTAAGTGTAAAAG
..................................................((((((((((.((((.....((..((((........(((..((((((((((((....))))..)))))))))))..(((((..((((((((.(((((......))))).)))))))).)))))..)))).))..))))))))))))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
....................................................AAAATAAATAAAGATAATG................................................................................................................................................................................... 1916.000.00-8.00-6.002.00--------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGAAAG..................................................................................................................................................................................... 264.000.00-1.00--3.00--------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGATTTT.................................................................................................................................................................................... 273.000.00-1.00-1.00----1.00----------------------------------------
............................................AAAAAAAAAAAATAAATAAAGAAAG..................................................................................................................................................................................... 253.000.00-2.00--1.00--------------------------------------------
............................................AAAAAAAAAAAATAAATAAAGATTG..................................................................................................................................................................................... 253.000.00---2.00----1.00----------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGATAAG.................................................................................................................................................................................... 272.000.00---1.001.00--------------------------------------------
...............................................AAAAAAAAATAAATAAAGAAG...................................................................................................................................................................................... 212.000.00-1.00--1.00--------------------------------------------
.............................................AAAAAAAAAAATAAATAAAGATTG..................................................................................................................................................................................... 242.000.00---1.00----1.00----------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGTTTT..................................................................................................................................................................................... 262.000.00---2.00---------------------------------------------
...................................CCTGTCTCAAAAAAAAAAAAATAAG.............................................................................................................................................................................................. 252.000.00-----2.00-------------------------------------------
................................................AAAAAAAATAAATAAAGATAAAAGAG................................................................................................................................................................................ 261.000.00--------1.00----------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGCCG...................................................................................................................................................................................... 251.000.00----1.00--------------------------------------------
................................................AAAAAAAATAAATAAAGATAAAAAAG................................................................................................................................................................................ 261.000.00----1.00--------------------------------------------
.............................................AAAAAAAAAAATAAATAAAGATG...................................................................................................................................................................................... 231.000.00---1.00---------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGAACAG.................................................................................................................................................................................... 271.000.00-1.00-----------------------------------------------
..............................................AAAAAAAAAATAAATAAAGACG...................................................................................................................................................................................... 221.000.00-1.00-----------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGATTAC.................................................................................................................................................................................... 271.000.00-1.00-----------------------------------------------
...............................................AAAAAAAAATAAATAAAGATAAAAGATTG.............................................................................................................................................................................. 291.000.00----1.00--------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAACA....................................................................................................................................................................................... 241.000.00-1.00-----------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGAATAG.................................................................................................................................................................................... 271.000.00---1.00---------------------------------------------
............................................AAAAAAAAAAAATAAATAAAGCTTT..................................................................................................................................................................................... 251.000.00---1.00---------------------------------------------
............................................AAAAAAAAAAAATAAATAAAGATAAG.................................................................................................................................................................................... 261.000.00----1.00--------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGTATT..................................................................................................................................................................................... 261.000.00-1.00-----------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAACGCC...................................................................................................................................................................................... 251.000.00-----1.00-------------------------------------------
...........................................AAAAAAAAAAAAATAAATACATT........................................................................................................................................................................................ 231.000.00-1.00-----------------------------------------------
..................................CCCTGTCTCAAAAAAAAAAAAATGGTG............................................................................................................................................................................................. 271.000.00-----1.00-------------------------------------------
........................................CTCAAAAAAAAAAAAATAAATGTGG......................................................................................................................................................................................... 251.000.00-----1.00-------------------------------------------
.......................................TCTCAAAAAAAAAAAAATAGACG............................................................................................................................................................................................ 231.000.00-------1.00-----------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGAACTA.................................................................................................................................................................................... 271.000.00-1.00-----------------------------------------------
..............................................AAAAAAAAAATAAATAAAGATAAAAGACAG.............................................................................................................................................................................. 301.000.00-1.00-----------------------------------------------
.CCACTGTACTCCAGCCTGGGTGATGGGGTCTC......................................................................................................................................................................................................................... 321.000.00------1.00------------------------------------------
........................................................................ACAACCAAAAAATAGTTTTAA............................................................................................................................................................. 211.000.00-------1.00-----------------------------------------
..........................................CAAAAAAAAAAAAATAAATAAATGAG...................................................................................................................................................................................... 261.000.00-----1.00-------------------------------------------
......ATCACCCAGGCTGGAGTAC................................................................................................................................................................................................................................. 1901.001.00-----------------------1.00-------------------------
.............................................AAAAAAAAAAATAAATAAAGCTT...................................................................................................................................................................................... 231.000.00------1.00------------------------------------------
........................................CTCAAAAAAAAAAAAATAAATTCGG......................................................................................................................................................................................... 251.000.00-----1.00-------------------------------------------
.............................................AAAAAAAAAAATAAATAAAGATG...................................................................................................................................................................................... 231.000.00-1.00-----------------------------------------------
...ACTGTACTCCAGCCTGGGTGATGCT.............................................................................................................................................................................................................................. 251.000.00------1.00------------------------------------------
............................................AAAAAAAAAAAATAAATAAAGCTTG..................................................................................................................................................................................... 251.000.00------1.00------------------------------------------
.CCACTGTACTCCAGCCTGGGTAAAA................................................................................................................................................................................................................................ 251.000.00-------------1.00-----------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGACTAG.................................................................................................................................................................................... 271.000.00-1.00-----------------------------------------------
.........................................TCAAAAAAAAAAAAATAAACTAC.......................................................................................................................................................................................... 231.000.00-------1.00-----------------------------------------
................................................AAAAAAAATAAATAAAGATAATG................................................................................................................................................................................... 231.000.00-1.00-----------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGC........................................................................................................................................................................................ 231.000.00--------1.00----------------------------------------
..........................GGGTGAGACCCTGTCTCAAAGATC........................................................................................................................................................................................................ 241.000.00-----1.00-------------------------------------------
............................................AAAAAAAAAAAATAAATAAAGCATG..................................................................................................................................................................................... 251.000.00-1.00-----------------------------------------------
.............................................AAAAAAAAAAATAAATAAAGACTA..................................................................................................................................................................................... 241.000.00----1.00--------------------------------------------
............................................AAAAAAAAAAAATAAATAAAGCG....................................................................................................................................................................................... 231.000.00---1.00---------------------------------------------
...........................................AAAAAAAAAAAAATAAATACGCC........................................................................................................................................................................................ 231.000.00-----1.00-------------------------------------------
........................................CTCAAAAAAAAAAAAATAAATAAAGG........................................................................................................................................................................................ 261.000.00------1.00------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGAATTA.................................................................................................................................................................................... 271.000.00---1.00---------------------------------------------
..........................................................................................................................................................................................................................................AGAGTAAGTGTAAAATT 171.000.00-------1.00-----------------------------------------
..................................CCCTGTCTCAAAAAAAAAAAAAGTTC.............................................................................................................................................................................................. 261.000.00-----1.00-------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGTTTA..................................................................................................................................................................................... 261.000.00-1.00-----------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGTATG..................................................................................................................................................................................... 261.000.00---1.00---------------------------------------------
.CCACTGTACTCCAGCCTGGGTGATGGGGCAC.......................................................................................................................................................................................................................... 311.000.00-----1.00-------------------------------------------
.............................................AAAAAAAAAAATAAATAAAGAAG...................................................................................................................................................................................... 231.000.00----1.00--------------------------------------------
..................................................................................................................................................................................................................GCAGATATGCTACATCTAG..................... 191.000.00----------------------------------1.00--------------
...........................................AAAAAAAAAAAAATAAATAAAGACTAA.................................................................................................................................................................................... 271.000.00-1.00-----------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGTTAT..................................................................................................................................................................................... 261.000.00-1.00-----------------------------------------------
....................................................AAAATAAATAAAGATAAATG.................................................................................................................................................................................. 201.000.00---1.00---------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGCAG...................................................................................................................................................................................... 251.000.00---1.00---------------------------------------------
...........................................AAAAAAAAAAAAATAAATAAAGCTG...................................................................................................................................................................................... 251.000.00-1.00-----------------------------------------------
........................................CTCAAAAAAAAAAAAATCGGG............................................................................................................................................................................................. 211.000.00------1.00------------------------------------------
..................................CCCTGTCTCAAAAAAAAAAAAATCG............................................................................................................................................................................................... 251.000.00------1.00------------------------------------------
....................................................AAAATAAATAAAGATAGT.................................................................................................................................................................................... 181.000.00-------1.00-----------------------------------------
..............................................AAAAAAAAAATAAATAAAGAAAT..................................................................................................................................................................................... 231.000.00----1.00--------------------------------------------
..............................................AAAAAAAAAATAAATAAAGATTG..................................................................................................................................................................................... 231.000.00--------1.00----------------------------------------
..................................CCCTGTCTCAAAAAAAAAAAAATGG............................................................................................................................................................................................... 251.000.00------1.00------------------------------------------
..................................CCCTGTCTCAAAAAAAAAAAAATAAACT............................................................................................................................................................................................ 281.000.00------1.00------------------------------------------
..........................................TCTTTATTTATTTTTTTTTTTTTG........................................................................................................................................................................................ 2450.400.40----0.20---0.20----------------------------------------
.........................TTTTTTTTTTTTTGAGACAGGGTCTCACCCC.................................................................................................................................................................................................. 3140.250.25------0.25------------------------------------------
......................................................CTTTTATCTTTATTTATT.................................................................................................................................................................................. 1850.200.20-------0.20-----------------------------------------
......................................GTCTCAAAAAAAAAAAAATAAATAAAGGAAG..................................................................................................................................................................................... 310.140.00-------0.14-----------------------------------------
..............................................ATCTTTATTTATTTTTTTTTT....................................................................................................................................................................................... 2170.140.14-0.14-----------------------------------------------
......................................CTTTATTTATTTTTTTTTTTTTGAGAC......................................................................................................................................................................................... 2770.140.14-----0.14-------------------------------------------