ID: uc002euy.1_intron_4_0_chr16_67977116_r.3p
GENE: LCAT(1)
chr16:67977066-67977315-


(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(4)
BREAST
(17)
CELL-LINE
(2)
CERVIX
(1)
HEART
(5)
LIVER
(3)
OTHER
(1)
RRP40.ip
(28)
SKIN

Sense strand
CCTCAGGGAAGCCTGGGCTTTGGCTACTGGGGGGACAGCAGGGAGAGGGGGTGTAAGCAGGGGAGGGTAAGTGTGCTTTGTACCTGGGGGTTGAGGGTATGGGAGGTGGGGGGTGGGTCTGGTCACTGCAGCATCTGGGGTGACGGGGGTAAGGGTCACGGGGGGAATCCAGAGTCCAGAGTGAGGGCTGCTGCTCACAGTGCCCGGCTGCCTGGGGAATCAGCTAGAAGCCAAGCTGGACAAACCAGAT
.........................................................((((..((((((....))))))...))))...................(((((.(((((.(((.((((((.(((...))).)))))).))).......((((....(((........)))...))))...))))).)))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037938(GSM510476)
293Red. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTGTAAGCAGGGGAGTTTT.....................................................................................................................................................................................1924.000.00--2.002.002.00--3.00----2.00-2.00---2.002.00----------1.00--------1.00-1.001.00-1.00--------1.00-------1.00--------
..................................................GTGTAAGCAGGGGAGTTT......................................................................................................................................................................................186.000.00-1.002.001.001.00------------------------------------------------------1.00----------
.............................................................................................................................................................................................................................AGCTAGAAGCCAAGCTGGACA........2114.004.00----------2.00--2.00--------------------------------------------------------
..................................................GTGTAAGCAGGGGAGGTTT.....................................................................................................................................................................................193.000.00-3.00--------------------------------------------------------------------
..............................................................................................................................................................................TCCAGAGTGAGGGCTGCTGCT.......................................................2112.002.002.00---------------------------------------------------------------------
..................................................GTGTAAGCAGGGGAGCCT......................................................................................................................................................................................181.000.00---1.00------------------------------------------------------------------
..................................................GTGTAAGCAGGGGAGTTAT.....................................................................................................................................................................................191.000.00-------1.00--------------------------------------------------------------
.....................................................................................................................................................................................................................GGGGAATCAGCTAGAAGCCAAG...............2211.001.001.00---------------------------------------------------------------------
.....GGGAAGCCTGGGCTTTGGCTACTGGGGGG........................................................................................................................................................................................................................2911.001.00-----1.00----------------------------------------------------------------
...................................................................................................................................................................................AGTGAGGGCTGCTGCTCACA...................................................2011.001.00---------------------1.00------------------------------------------------
.............................GGGGGACAGCAGGGAGAGAGAT.......................................................................................................................................................................................................221.000.00--------1.00-------------------------------------------------------------
..........................................................................................................................................................................AGAGTCCAGAGTGAGGGC..............................................................1811.001.00-----------------1.00----------------------------------------------------
.....................................................................................................................................................................................................................GGGGAATCAGCTAGAAGCCAAGCT.............2411.001.001.00---------------------------------------------------------------------
................................................................................................................................CAGCATCTGGGGTGACGG........................................................................................................1811.001.00-----1.00----------------------------------------------------------------
..................................ACAGCAGGGAGAGGGGTCT.....................................................................................................................................................................................................191.000.00--------------------------------------------------------------1.00-------
....................................................................................................................................................................................................................TGGGGAATCAGCTAGAAGCCAAGCTGGACA........3011.001.001.00---------------------------------------------------------------------
......................................................................................GGGGTTGAGGGTATGAAAA.................................................................................................................................................191.000.00-------------------------------------------------1.00--------------------
............................................................................................GAGGGTATGGGAGGTGGGGCTT........................................................................................................................................221.000.00-----------1.00----------------------------------------------------------
..................................................GTGTAAGCAGGGGAGTGTT.....................................................................................................................................................................................191.000.00-1.00--------------------------------------------------------------------
............................................................................................................................................................................................................CGGCTGCCTGGGGAATCAGCTAGAAGCC..................2811.001.001.00---------------------------------------------------------------------
.....................................................................................................GGAGGTGGGGGGTGGTCT...................................................................................................................................181.000.00-----------------------------------------------------------------1.00----
..........................................................AGGGGAGGGTAAGTGTGCTTTGTACCTGGG..................................................................................................................................................................3011.001.00-----1.00----------------------------------------------------------------
..................................................GTGTAAGCAGGGGAGTTCC.....................................................................................................................................................................................191.000.00----1.00-----------------------------------------------------------------
....AGGGAAGCCTGGGCTTTGG...................................................................................................................................................................................................................................1911.001.00-------------------------------------1.00--------------------------------
........................................................GCAGGGGAGGGTAAGTGGAA..............................................................................................................................................................................201.000.00-------------------------1.00--------------------------------------------
..................................................GTGTAAGCAGGGGAGTTTA.....................................................................................................................................................................................191.000.00-----------------------------------------------1.00----------------------
....................................................................................................................................................................................................................TGGGGAATCAGCTAGAAGCC..................2011.001.00----------------------------------------------------------------1.00-----
..........................................................AGGGGAGGGTAAGTGTGAT.............................................................................................................................................................................191.000.00--------------------------------1.00-------------------------------------
.............................................................................................................................................................................................................................AGCTAGAAGCCAAGCTGGATA........211.000.00----------1.00-----------------------------------------------------------
..................................................GTGTAAGCAGGGGAGCTTT.....................................................................................................................................................................................191.000.00--1.00-------------------------------------------------------------------
..................................................................................................ATGGGAGGTGGGGGGACTT.....................................................................................................................................191.000.00-----------1.00----------------------------------------------------------

Antisense strand
CCTCAGGGAAGCCTGGGCTTTGGCTACTGGGGGGACAGCAGGGAGAGGGGGTGTAAGCAGGGGAGGGTAAGTGTGCTTTGTACCTGGGGGTTGAGGGTATGGGAGGTGGGGGGTGGGTCTGGTCACTGCAGCATCTGGGGTGACGGGGGTAAGGGTCACGGGGGGAATCCAGAGTCCAGAGTGAGGGCTGCTGCTCACAGTGCCCGGCTGCCTGGGGAATCAGCTAGAAGCCAAGCTGGACAAACCAGAT
.........................................................((((..((((((....))))))...))))...................(((((.(((((.(((.((((((.(((...))).)))))).))).......((((....(((........)))...))))...))))).)))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037938(GSM510476)
293Red. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................ATCCAGAGTCCAGAGTCC.................................................................. 187.000.00---------2.00-------1.00----1.00---1.00-------------------------1.00--1.00--------------
......................................................................................................................................................................ATCCAGAGTCCAGAGTGC.................................................................. 186.000.00--------------------1.00---------------1.00---1.00----------------1.001.00-1.00---------
......................................................................................................................................................................ATCCAGAGTCCAGAGTGCC................................................................. 196.000.00----------------------------1.00----1.00---------1.00--1.00----1.00--1.00---------------
......................................................................................................................................................................ATCCAGAGTCCAGAGTGCCAG............................................................... 214.000.00------1.00--------2.00--------1.00---------------------------------------------
......................................................................................................................................................................ATCCAGAGTCCAGAGTGCCGA............................................................... 212.000.00------2.00---------------------------------------------------------------
......................................................................................................................................................................ATCCAGAGTCCAGAGTCCAG................................................................ 202.000.00------1.00--------------------1.00------------------------------------------
....................................................................................TGGGGGTTGAGGGTACATA................................................................................................................................................... 191.000.00-----------------------------1.00----------------------------------------
....................................................................................................................................................................GAATCCAGAGTCCAGAAGC................................................................... 191.000.00---------1.00------------------------------------------------------------
...................................................................................................TGGGAGGTGGGGGGTAGC..................................................................................................................................... 181.000.00----------------------------------1.00-----------------------------------
.............................................................................................................................................................................GTCCAGAGTGAGGGCTGCTGCTCC..................................................... 241.000.00----------------1.00-----------------------------------------------------
......................................................................................................................................................................ATCCAGAGTCCAGAGTCAGC................................................................ 201.000.00--------------------------------------1.00-------------------------------
......................................................................................................................................................................ATCCAGAGTCCAGAGTCT.................................................................. 181.000.00--------------------------------------------------------1.00-------------
.................................................................................ACCTGGGGGTTGAGGGATT...................................................................................................................................................... 191.000.00--------1.00-------------------------------------------------------------
................................................................................................GTATGGGAGGTGGGGTTTT....................................................................................................................................... 191.000.00--------------------------------------------------1.00-------------------
......................................................................................................................................................................ATCCAGAGTCCAGAGCCAG................................................................. 191.000.00---------------------------------------------1.00------------------------
.......................................................................................................................................................................TCCAGAGTCCAGAGTAGC................................................................. 181.000.00---------------------------------------------------------------1.00------
.......................................................................................................................................................................TCCAGAGTCCAGAGTATAC................................................................ 191.000.00------------------------------------------------1.00---------------------
...........................................................................................................................................................TCACTCTGGACTCTGGATTCCCCCCGTGA.................................................................. 2911.001.00-----------------------------------1.00----------------------------------
.................................................................................................................................................................................................GGCAGCCGGGCACTGTGAG...................................... 1911.001.00-----1.00----------------------------------------------------------------
....................................................................................................................................................................GAATCCAGAGTCCAGAGACAG................................................................. 211.000.00--------1.00-------------------------------------------------------------
..............................................................................................................................................................................................CCCCAGGCAGCCGGGCACTGTGAGCAG................................. 2711.001.00----------------1.00-----------------------------------------------------
......................................................................................................................................................................ATCCAGAGTCCAGAGTGCCG................................................................ 201.000.00-------------------------------1.00--------------------------------------
......................................................................................................................................................................ATCCAGAGTCCAGAGGCAG................................................................. 191.000.00-----------------------1.00----------------------------------------------
.......................................................................................................................................................................TCCAGAGTCCAGAGTGAA................................................................. 180.400.00------------------------------------------------------------------0.40---
.......................................................................................................................................................................CACTCTGGACTCTGGA................................................................... 1650.400.40-------------------------------------------------------------------0.200.20-
................CCCCAGTAGCCAAAGC.......................................................................................................................................................................................................................... 1670.140.14---------------------------------------------------------------------0.14