ID: uc002eqo.2_intron_3_0_chr16_66959098_r
GENE: RRAD(1)
chr16:66959048-66959361-


(3)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(9)
CERVIX 		(5)
HEART 		(1)
HELA 		(1)
KIDNEY 		(1)
OTHER 		(20)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTGGCCTCCTAATCCGGATCCTAGTCCTGAGCGTGTCTGTGTGCGAGTGGGTGAGTGTCCTGGCGGAGCGGGGTCGGGGCGGCTGCAGATGGATGCGCCAGGTCCGGAGGGGTCCCGGGTGAGGGCGCCGCGACCTGGGGGCTGGGGGAGGGCTGCGGCGGGACCTCGGCCGGAGCATCCCGCCTGACTCCGGGTTGGGCAGGTGCGCCCCGGGTCCCGCCTCCCTCGCGGCTTACACGGCCACTCGGGTTCCTGATCCCCTAGACGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGG
...................................................................((.((((((.((((.(((((......))).((.((.((.....)).)).))....)).)))).))))))...((((((((....((....))....))))))))...))..........................................................................................................................................
.................................................................66............................................................................................................176........................................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532876(GSM532876)
G547T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM532880(GSM532880)
G659T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040042(GSM532927)
G428N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040030(GSM532915)
G013N. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040040(GSM532925)
G612N. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
......................................................................GGGTCGGGGCGGCTGC....................................................................................................................................................................................................................................1628.008.00-4.50-------------------------------0.50------1.00---0.500.50--0.500.50--------
......................................................................GGGTCGGGGCGGCTGCGGCG................................................................................................................................................................................................................................2026.508.001.00-1.00--------------1.001.00--1.00-------1.00---0.50------------------------
......................................................................GGGTCGGGGCGGCTGCGG..................................................................................................................................................................................................................................1824.008.00---1.001.00--------2.00--------------------------------------------
......................................................................GGGTCGGGGCGGCTGCGGC.................................................................................................................................................................................................................................1924.008.003.00----1.00----------------------------------------------------
.....................................................................GGGGTCGGGGCGGCTGC....................................................................................................................................................................................................................................1722.502.50---0.500.50--1.50--------------------------------------------------
...................................................................................................................................................................................................................................................................................CGCGATGACCCTGAACGG.....................1812.002.00--------------1.00-------1.00-----------------------------------
......................................................................GGGTCGGGGCGGCTGTGG..................................................................................................................................................................................................................................181.000.00---1.00------------------------------------------------------
................................................................GGAGCGGGGTCGGGGCGGCGAC....................................................................................................................................................................................................................................221.000.001.00---------------------------------------------------------
.........................................................TCCTGGCGGAGCGGGGTCGGAGGG.........................................................................................................................................................................................................................................241.000.00-----------1.00----------------------------------------------
.............................AGCGTGTCTGTGTGCAAA...........................................................................................................................................................................................................................................................................181.000.00---------------------------1.00------------------------------
.....................................................................GGGGTCGGGGCGGCTGA....................................................................................................................................................................................................................................171.000.00-------1.00--------------------------------------------------
......................................................................GGGTCGGGGCGGCTGCT...................................................................................................................................................................................................................................1721.008.00---1.00------------------------------------------------------
................................................................GGAGCGGGGTCGGGGCGGCAG.....................................................................................................................................................................................................................................211.000.001.00---------------------------------------------------------
.............................................................................................................................................................GCGGGACCTCGGCCGGAGCATC.......................................................................................................................................2211.001.00--------1.00-------------------------------------------------
.........................................................................................................................................................TGCGGCGGGACCTCGGCTC..............................................................................................................................................191.000.00-----------1.00----------------------------------------------
...........................................................................................................................................................................................................................................................................GTCCCGGACGCGATG................................1511.001.00------1.00---------------------------------------------------
..........................CTGAGCGTGTCTGTGTGCGAGTGG........................................................................................................................................................................................................................................................................2411.001.00------------------------1.00---------------------------------
.....................................................................GGGGTCGGGGCGGCTGCGGT.................................................................................................................................................................................................................................2021.002.50-------------------1.00--------------------------------------
...............................................................................................................................................................................................................................................................................CGGACGCGATGACCCTGAAC.......................2011.001.00----------1.00-----------------------------------------------
......................................................................GGGTCGGGGCGGCTGCA...................................................................................................................................................................................................................................1711.001.00-1.00--------------------------------------------------------
.................................................................................................................................................................................................................................................................................GACGCGATGACCCTGAACG......................1911.001.00--1.00-------------------------------------------------------
................................................................................................................................................................................................................................................................................................AACGGCGGCGGCAGCTGT........181.000.00-----------------------1.00----------------------------------
.......................................................................................................................................................................................................................................................................................ATGACCCTGAACGGCGGCGGCAGCGGAGCG.....3011.001.00--------1.00-------------------------------------------------
................................................................................................................................................................................................................................................................................GGACGCGATGACCCTGAA........................1811.001.00--1.00-------------------------------------------------------
....................................................................................................................................................................................................................................................................................................GCGGCGGCAGCGGAG.......1501.001.00-----------------------------------1.00----------------------
............................................................................................................................................................................................................................................................................TCCCGGACGCGATGACCCTGAACGGCGG..................2811.001.00--1.00-------------------------------------------------------
......................................................................GGGTCGGGGCGGCTGCGT..................................................................................................................................................................................................................................1821.008.00----1.00-----------------------------------------------------
..................................................................................................................................................................................................................................................................................ACGCGATGACCCTGAAC.......................1711.001.00------1.00---------------------------------------------------
..............................................................................................................................................................................................................................................................................CCGGACGCGATGACCCTGAACGGCGGC.................2711.001.00--------------------1.00-------------------------------------
.................................................................................................................................................................................................................................................................................................ACGGCGGCGGCAGCGGGG.......181.000.00--------------------------------1.00-------------------------
.................................................................GAGCGGGGTCGGGGCGGC.......................................................................................................................................................................................................................................1811.001.001.00---------------------------------------------------------
......................................................................................................................................................................................................................................................................AGACGGTCCCGGACGCCTGG................................201.000.00---------1.00------------------------------------------------
.....................TAGTCCTGAGCGTGTCTGTGTGCGAGTGG........................................................................................................................................................................................................................................................................2911.001.00--------------1.00-------------------------------------------
......................................................................GGGTCGGGGCGGCTGTG...................................................................................................................................................................................................................................171.000.00--------------------------1.00-------------------------------
................................................................GGAGCGGGGTCGGGGCGG........................................................................................................................................................................................................................................1821.001.001.00---------------------------------------------------------
......................................................................GGGTCGGGGCGGCTGCCT..................................................................................................................................................................................................................................1821.008.00----1.00-----------------------------------------------------
.....................................................................................................................................................................................................................................................................................................CGGCGGCAGCGGAGCGG....1721.001.00-------------------------------0.50---------------0.50----------
...............................................................................................................................................................................................................................................................................CGGACGCGATGACCCTGAACGG.....................2211.001.00----------1.00-----------------------------------------------
......................................................................GGGTCGGGGCGGCTGA....................................................................................................................................................................................................................................161.000.00--------------------------------------1.00-------------------
..................................................................................................................................................................................................................................................................................................CGGCGGCGGCAGCGGAGGT.....191.000.00---------------1.00------------------------------------------
......................................................................GGGTCGGGGCGGCTGCGTC.................................................................................................................................................................................................................................1921.008.00---1.00------------------------------------------------------
....................................................................................................................................................................................................................................................................................GCGATGACCCTGAACGGCGGCGGCAGCG..........2811.001.00------1.00---------------------------------------------------
............................................................TGGCGGAGCGGGGTCTCT............................................................................................................................................................................................................................................181.000.00----------------------------------1.00-----------------------
.............................................................................................................................................................................................................CGCCCCGGGTCCCGCGCGG..........................................................................................191.000.00----------------------------1.00-----------------------------
..................................................................................................................................................GGAGGGCTGCGGCGGTGGC.....................................................................................................................................................191.000.00------------1.00---------------------------------------------
..........................................................................................................................................................................................................................................ACACGGCCACTCGGGTTCC.............................................................1911.001.00---------1.00------------------------------------------------
.......................................................................................................................................................................................................................................................................................ATGACCCTGAACGGC....................1511.001.00--1.00-------------------------------------------------------
....................................................................CGGGGTCGGGGCGGC.......................................................................................................................................................................................................................................1590.670.67--0.11--------------0.110.11-----------------------------------0.11-0.110.11
................................................................................................................................................GGGGAGGGCTGCGGCGGG........................................................................................................................................................1820.500.50-------------------------------------------0.50--------------
.....................................................................................................................................................................................................................................................................................................CGGCGGCAGCGGAGCGGCA..1920.501.00------------------------------------------0.50---------------
......................................................................................................................................................................................CCTGACTCCGGGTTGG....................................................................................................................1620.500.50----------------------------------------------0.50-----------
..................................................GTGAGTGTCCTGGCG.........................................................................................................................................................................................................................................................1520.500.50----------------0.50-----------------------------------------
................................................................GGAGCGGGGTCGGGGCG.........................................................................................................................................................................................................................................1720.500.500.50---------------------------------------------------------
...............................CGTGTCTGTGTGCGAG...........................................................................................................................................................................................................................................................................1620.500.50-------------------------------0.50--------------------------
......................................................................................................................................CTGGGGGCTGGGGGAGGGC.................................................................................................................................................................1920.500.50----------------0.50-----------------------------------------
..........................................................................................................................................................................................................................................................................................................GCAGCGGAGCGGGCGG1630.330.33---------------------------------------------------0.33------
....................................................................................................................................................................................................................................................................................................GCGGCGGCAGCGGAGCG.....1730.330.33-----------------------------------------0.33----------------
............................................GAGTGGGTGAGTGTCC..............................................................................................................................................................................................................................................................1630.330.33--------------------------------------------------0.33-------
.......................................................................GGTCGGGGCGGCTGCGGC.................................................................................................................................................................................................................................1840.250.25----0.25-----------------------------------------------------
.......................................................................GGTCGGGGCGGCTGC....................................................................................................................................................................................................................................1540.250.25----------------------------------------------------0.25-----
..............................................................................................................................................................................................CGGGTTGGGCAGGTGC............................................................................................................1640.250.25-----------------------------------------0.25----------------
.................................................................................................................................................GGGAGGGCTGCGGCGGG........................................................................................................................................................1740.250.25---------------0.25------------------------------------------
.......................................................................GGTCGGGGCGGCTGCGGCG................................................................................................................................................................................................................................1940.250.25-----------------------------------------------------0.25----
...................................................................GCGGGGTCGGGGCGGC.......................................................................................................................................................................................................................................1650.200.20----------------0.20-----------------------------------------
......................................................................................................................................................GGCTGCGGCGGGACC.....................................................................................................................................................1580.120.12-0.12--------------------------------------------------------
....................................................................................................................................................AGGGCTGCGGCGGGA.......................................................................................................................................................1580.120.12--0.12-------------------------------------------------------
....................................................................CGGGGTCGGGGCGGCAG.....................................................................................................................................................................................................................................1790.110.670.11---------------------------------------------------------
....................................................................CGGGGTCGGGGCGGCAGG....................................................................................................................................................................................................................................1890.110.67-------------------------------------------------------0.11--

Antisense strand
GTGGCCTCCTAATCCGGATCCTAGTCCTGAGCGTGTCTGTGTGCGAGTGGGTGAGTGTCCTGGCGGAGCGGGGTCGGGGCGGCTGCAGATGGATGCGCCAGGTCCGGAGGGGTCCCGGGTGAGGGCGCCGCGACCTGGGGGCTGGGGGAGGGCTGCGGCGGGACCTCGGCCGGAGCATCCCGCCTGACTCCGGGTTGGGCAGGTGCGCCCCGGGTCCCGCCTCCCTCGCGGCTTACACGGCCACTCGGGTTCCTGATCCCCTAGACGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGG
...................................................................((.((((((.((((.(((((......))).((.((.((.....)).)).))....)).)))).))))))...((((((((....((....))....))))))))...))..........................................................................................................................................
.................................................................66............................................................................................................176........................................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532876(GSM532876)
G547T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM532880(GSM532880)
G659T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040042(GSM532927)
G428N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040030(GSM532915)
G013N. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040040(GSM532925)
G612N. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................................AGGGCTGCGGCGGGACT..................................................................................................................................................... 172.000.00-----2.00----------------------------------------------------
......................................GTGTGCGAGTGGGTGAGTCC................................................................................................................................................................................................................................................................ 201.000.00---------------------------------------1.00------------------
...............................................................................................................................CCGCGACCTGGGGGCGTG......................................................................................................................................................................... 181.000.00------------------------------------1.00---------------------
.........................CCTGAGCGTGTCTGTCCTG.............................................................................................................................................................................................................................................................................. 191.000.00------------------------------1.00---------------------------
.......................................................................................................CCGGAGGGGTCCCGGGC.................................................................................................................................................................................................. 171.000.00-------------------------------------1.00--------------------
............................................................................................................................................................................................................GCGCCCCGGGTCCCGGGC............................................................................................ 181.000.00------------1.00---------------------------------------------
...........................................................................................................................GGCGCCGCGACCTGGGGA............................................................................................................................................................................. 181.000.00-------------------------1.00--------------------------------
............................................................................................................................CCCAGGTCGCGGCGC............................................................................................................................................................................... 1520.500.50-0.50--------------------------------------------------------