ID: uc002eqb.1_intron_6_0_chr16_66766378_r.3p
GENE: DYNC1LI2(6)
chr16:66766328-66766577-


(1)
B-CELL
(1)
BRAIN
(4)
BREAST
(14)
CELL-LINE
(2)
CERVIX
(2)
HEART
(3)
HELA
(2)
LIVER
(4)
OTHER
(11)
SKIN
(1)
XRN.ip

Sense strand
TTATTTATTTATTTATTTTTACCAGTGTGCAGTATGCCTATGTAATACTATAAGCGTTTTAGTTTTTAAAATTGTAATGCTTTCTGTTGCTCATATATTGATCAAAAACTGATCAACCTATGAGTAGTACTTTGAGGTTGTATGTGTTCGATTTTGTCTCCTCCTGCAGTGAATTGATTTTTCTTGAGCAGATTGATTAGATGGAGCTGCCTTGATTTACACATCAGTGAAAGAAGAGAAAAACCTCGAC
.........................................................................................................................(((.((.((...(((((((........))))))))))).)))((((...(((.......)))....))))...........................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR343336DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
...................................................................................................................................................................................TTTCTTGAGCAGATTGATTAGA.................................................22125.0025.0022.00-------1.00---1.00------------1.00------------------
.............................................................................................................................................ATGTGTTCGATTTTGTCTCCTCCTGCAGTGAATTGATTTTTCTTGAGCAGATTGATTA...................................................5816.006.00-6.00------------------------------------------
...................................................................................................................................................................................TTTCTTGAGCAGATTGATTAGATTTA.............................................265.000.00--5.00-----------------------------------------
...............................................................................................................................................................................GATTTTTCTTGAGCAGATTGATTAGA.................................................2613.003.00---3.00----------------------------------------
...................................................................................................................................................................................TTTCTTGAGCAGATTGATTAGAA................................................2313.0025.003.00-------------------------------------------
............................................................................................................................................................................................................................ACATCAGTGAAAGAAGAGAAA.........2112.002.00----2.00---------------------------------------
...................................................................................................................................................................................................ATTAGATGGAGCTGCCTTGATTTACACACCAG.......................322.000.00-----2.00--------------------------------------
.................................................................................................................................................................................................................................AGTGAAAGAAGAGAAAAACC.....2012.002.00-------------1.00-------1.00----------------------
.........................................................................................................................GAGTAGTACTTTGAGGTTGTATGTG........................................................................................................2511.001.00------1.00-------------------------------------
..ATTTATTTATTTATTTTTACCAG.................................................................................................................................................................................................................................2321.001.00---------0.50-------------------------0.50--------
...........................................AATACTATAAGCGTTTTAGTTTTTAAAATTGTAATGCTTTCTGTTGCTCATATATTGATCAAAAACTGATCAACCTATGAGTAGTACTTTG....................................................................................................................9111.001.00--------------------1.00-----------------------
.TATTTATTTATTTATTTTTACCACCAG..............................................................................................................................................................................................................................271.000.00---------1.00----------------------------------
..................................................................................................................................................................................TTTTCTTGAGCAGATTGATTAG..................................................2211.001.00-----------------1.00--------------------------
..........................................................................................................................................................................................AGCAGATTGATTAGATGGAGCTGC........................................2411.001.00----------------------------------1.00---------
.......................................................................................................................................................................................................................................AGAAGAGAAAAACCTCGA.1811.001.00----------------------------------------1.00---
........................................................................................................................TGAGTAGTACTTTGAGGTT...............................................................................................................1911.001.00------------------------------1.00-------------
........................................................................................................................................................................................................ATGGAGCTGCCTTGATTTA...............................1911.001.00------------------1.00-------------------------
............................................................................................................................................TATGTGTTCGATTTTGTCTCCT........................................................................................2211.001.00--------------1.00-----------------------------
.....................................................................................................................................................................................................................GATTTACACATCAGTGAAAGAAGAGA...........2611.001.00--------------------------------1.00-----------
........................................................................................................................................................................GTGAATTGATTTTTCTTGAGCAGATTGATTAG..................................................3211.001.00---------------1.00----------------------------
............................................................................................................................................................................................CAGATTGATTAGATGGAGCTGCCTTGATTT................................3011.001.00-----------------------------1.00--------------
.............................................................................................................................................................................................................................CATCAGTGAAAGAAGAGAAAAACCTC...2611.001.00----------1.00---------------------------------
........................................................................................................................................................................................TGAGCAGATTGATTAGTT................................................181.000.00----------------1.00---------------------------
.......................................................................................................................................................................................................................................AGAAGAGAAAAACCTCGAC1911.001.00--------------------------------------1.00-----
..ATTTATTTATTTATTTTTACCATCAT..............................................................................................................................................................................................................................261.000.00-------1.00------------------------------------
..ATTTATTTATTTATTTTTACCACCAG..............................................................................................................................................................................................................................261.000.00-------1.00------------------------------------
............................................................................ATGCTTTCTGTTGCTTATG...........................................................................................................................................................191.000.00---------------------------------------1.00----
.........................................................................................................................GAGTAGTACTTTGAGGTTGTATGTGTTC.....................................................................................................2811.001.00------1.00-------------------------------------
.......................................................................................................................................................................................TTGAGCAGATTGATTAGATGGAGCT..........................................2511.001.00------------------------------------1.00-------
............................................................................................................CTGATCAACCTATGAGTAGTAC........................................................................................................................2211.001.00--------------------------1.00-----------------
...................................................................................................................................................................................TTTCTTGAGCAGATTGATTAGAAAA..............................................2511.0025.00-----------------------1.00--------------------
......................................................................................................................................................................................................AGATGGAGCTGCCTTGATTTACACATCA........................2811.001.00------------------------1.00-------------------
...................................................................................................................................................................................TTTCTTGAGCAGATTGATTAG..................................................2111.001.00-------------------------------------1.00------
..................................................................................................................................................................................TTTTCTTGAGCAGATTGATTAGAA................................................241.000.001.00-------------------------------------------
...................................................................................................................................................................................TTTCTTGAGCAGATTGATTAGT.................................................2211.001.001.00-------------------------------------------
............................................................................................................................................................................................CAGATTGATTAGATGGAGCT..........................................2011.001.00---------------------------------1.00----------
.............................................................................................................................................................................................................GCTGCCTTGATTTACACATCAGTG.....................2411.001.00----------------------1.00---------------------
.....................................................................................................................CTATGAGTAGTACTTTG....................................................................................................................1720.500.50--------0.50-----------------------------------
.TATTTATTTATTTATTTTTACCAG.................................................................................................................................................................................................................................2420.500.50-----------------------------------------0.50--
.......................................................................................................................ATGAGTAGTACTTTG....................................................................................................................1580.120.12------------------------------------------0.12-
.....................................................................................................................................................................................................................................AAAGAAGAGAAAAACCT....1790.110.11-------------------------------------------0.11

Antisense strand
TTATTTATTTATTTATTTTTACCAGTGTGCAGTATGCCTATGTAATACTATAAGCGTTTTAGTTTTTAAAATTGTAATGCTTTCTGTTGCTCATATATTGATCAAAAACTGATCAACCTATGAGTAGTACTTTGAGGTTGTATGTGTTCGATTTTGTCTCCTCCTGCAGTGAATTGATTTTTCTTGAGCAGATTGATTAGATGGAGCTGCCTTGATTTACACATCAGTGAAAGAAGAGAAAAACCTCGAC
.........................................................................................................................(((.((.((...(((((((........))))))))))).)))((((...(((.......)))....))))...........................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR343336DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
..................................................................................................................................................................................................GATTAGATGGAGCTGG........................................ 161.000.00---------------------------1.00----------------
.........................................................................................................................................TTGTATGTGTTCGATTAC............................................................................................... 181.000.00-------------------------------1.00------------
..............................................ACTATAAGCGTTTTATCAT......................................................................................................................................................................................... 191.000.00----------------------------1.00---------------
....................................................................................TGTTGCTCATATATTGCG.................................................................................................................................................... 181.000.00-------------------1.00------------------------
..............................................................................................................................................TGTGTTCGATTTTGTAG........................................................................................... 171.000.00-----------1.00--------------------------------