ID: uc002epz.2_intron_1_0_chr16_66656126_r.3p
GENE: (3)
chr16:66656076-66656325-


(2)
AGO2.ip
(1)
B-CELL
(4)
BRAIN
(4)
BREAST
(11)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(2)
LIVER
(2)
OTHER
(6)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CACCCCGTCATATGTATTTGAAACAAGACTTTAGATCAAATGGGGCTGCTGAGAGGGGGAAGAGATCAAGGAATGAAGGCACAGGGTTGTAATGATCAGCTGGCAGAGCAGGAAGGGGCTGCATGTGGCTTGGGTCACCACAGAAGCCTTGAGGGGCCAGGCCACGTGCCCGAGGACTAACTGTGCTGGTGTGTTTTTAGATATTTGGCTTCTTGGCGACTGCGGCATATGCAGTGAACACATTCCTGGC
..................................................................................................((..(((.((.((.....((..(((((((((((((.((..((.((....))))..)).))))))))))))))).....))..)).)))..))............................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040040(GSM532925)
G612N. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR038861(GSM458544)
MM466. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................TCAGCTGGCAGAGCAAC..........................................................................................................................................17026.003.0023.00------3.00-----------------------------
...............................................................................................TCAGCTGGCAGAGCAACTG........................................................................................................................................19023.003.00--14.00-7.001.00-----------------1.00-------------
...............................................................................................TCAGCTGGCAGAGCAACT.........................................................................................................................................18011.003.00----3.007.00-----------------------1.00-------
...............................................................................................TCAGCTGGCAGAGCATC..........................................................................................................................................1708.003.00-8.00-----------------------------------
...............................................................................................TCAGCTGGCAGAGCAATC.........................................................................................................................................1807.003.00-7.00-----------------------------------
.................................................................................................................AGGGGCTGCATGTGGTACT......................................................................................................................194.000.00-----------2.001.00------------------1.00-----
...............................................................................................TCAGCTGGCAGAGCA............................................................................................................................................1503.003.002.00--------------------------------1.00---
..........................................................................................................AGCAGGAAGGGGCTGTGG..............................................................................................................................182.000.00------1.00-----------------------1.00------
.........................................................................................................................................................GGGCCAGGCCACGTGCCCGAGGACTAACTGT..................................................................3112.002.00----------2.00--------------------------
............................................................................................................................................................................................................TTGGCTTCTTGGCGACTGC...........................1912.002.00-----------------1.00-1.00-----------------
..................TGAAACAAGACTTTAGATCAAATGGGG.............................................................................................................................................................................................................2712.002.00---2.00---------------------------------
...................................................................................................................................................................................................................CTTGGCGACTGCGGCATATGCAG................2311.001.00----------------------------1.00--------
.................................................................................................................AGGGGCTGCATGTGGACA.......................................................................................................................181.000.00----------------1.00--------------------
.........................................................................................................................................................................................................TATTTGGCTTCTTGGCGACTGCGGC........................2511.001.00---1.00---------------------------------
............................................................................................................................................................................................................................TGCGGCATATGCAGTGAACAC.........2111.001.00------------1.00------------------------
..........................................................................GAAGGCACAGGGTTGAGTG.............................................................................................................................................................191.000.00---------1.00---------------------------
.............................TTTAGATCAAATGGGGCTGCTGAGA....................................................................................................................................................................................................2511.001.00---1.00---------------------------------
.........................................................................................................................................................................................................TATTTGGCTTCTTGGCGACTGCGGCC.......................2611.001.00---------------------1.00---------------
............................................................................................................................................................................................................TTGGCTTCTTGGCGACTGCGGCATAAA...................271.000.00---1.00---------------------------------
.................................................................................................................AGGGGCTGCATGTGGTAA.......................................................................................................................181.000.00---------1.00---------------------------
.................................................................................................................AGGGGCTGCATGTGGACAA......................................................................................................................191.000.00-------------------------1.00-----------
...............................................................................................TCAGCTGGCAGAGCAA...........................................................................................................................................1601.003.001.00------------------------------------
....................AAACAAGACTTTAGATCAAATGGGGCTA..........................................................................................................................................................................................................281.000.00---1.00---------------------------------
..........................................................................................................................................................................CGAGGACTAACTGTGCTGCTGA..........................................................221.000.00--------1.00----------------------------
.................TTGAAACAAGACTTTAGATCAAATGGGGC............................................................................................................................................................................................................2911.001.00---1.00---------------------------------
....................................................................................................................................................................................................................TTGGCGACTGCGGCATA.....................1711.001.00----------------------1.00--------------
.....................................................................................................................................................................GTGCCCGAGGACTAACTGTGCTGGTG...........................................................2611.001.00------------------------1.00------------
..................................................................................................................................................................................................................TCTTGGCGACTGCGGCATAT....................2011.001.00------1.00------------------------------
............................................................................................................................................................................................................................TGCGGCATATGCAGTGAACACATT......2411.001.00--------------------1.00----------------
.............................................................................................................................................................................................................TGGCTTCTTGGCGACTGCGGTAT......................231.000.00------1.00------------------------------
............................................................................................................................................................................................................................TGCGGCATATGCAGTGAACACATTCCT...2711.001.00---------------------------1.00---------
....................................................................................................................................................................................................................TTGGCGACTGCGGCA.......................1511.001.00----------------------------------1.00--
..................TGAAACAAGACTTTAGATCAAATAGGG.............................................................................................................................................................................................................271.000.00---1.00---------------------------------
...................................................................................................................................................................................................................CTTGGCGACTGCGGCAT......................1711.001.00--------------------------------1.00----
.........................................................................................................................................................................................................TATTTGGCTTCTTGGCGACTGCGGCATAT....................2911.001.00---1.00---------------------------------
...................................................................................................................................................................................................................CTTGGCGACTGCGGCATAT....................1911.001.00---1.00---------------------------------
.....................................................................................................................................................TGAGGGGCCAGGCCACGGACC................................................................................211.000.00------------------1.00------------------
..........TATGTATTTGAAACAAGACTTTAGAT......................................................................................................................................................................................................................2611.001.00---1.00---------------------------------
......................................................GGGGGAAGAGATCAAGGAATGAAGGCACA.......................................................................................................................................................................2911.001.00-------------1.00-----------------------
.............................................................................................GATCAGCTGGCAGAGCGTG..........................................................................................................................................191.000.00--------1.00----------------------------
................................................................................................CAGCTGGCAGAGCAGGACTGT.....................................................................................................................................211.000.00--------------------------1.00----------
.................................GATCAAATGGGGCTG..........................................................................................................................................................................................................1580.120.12------------------------------------0.12

Antisense strand
CACCCCGTCATATGTATTTGAAACAAGACTTTAGATCAAATGGGGCTGCTGAGAGGGGGAAGAGATCAAGGAATGAAGGCACAGGGTTGTAATGATCAGCTGGCAGAGCAGGAAGGGGCTGCATGTGGCTTGGGTCACCACAGAAGCCTTGAGGGGCCAGGCCACGTGCCCGAGGACTAACTGTGCTGGTGTGTTTTTAGATATTTGGCTTCTTGGCGACTGCGGCATATGCAGTGAACACATTCCTGGC
..................................................................................................((..(((.((.((.....((..(((((((((((((.((..((.((....))))..)).))))))))))))))).....))..)).)))..))............................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040040(GSM532925)
G612N. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR038861(GSM458544)
MM466. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................AGATCAAATGGGGCTGCAGT...................................................................................................................................................................................................... 201.000.00---------------1.00---------------------
.....................................................................................................................................................................................................................ATGCCGCAGTCGCCA...................... 1511.001.00--------------1.00----------------------
.............................................................................................CTCTGCCAGCTGATC.............................................................................................................................................. 1590.780.78-0.78-----------------------------------
.........................................................................................................................................CCTCAAGGCTTCTGTGG................................................................................................ 1720.500.50-----------------------------------0.50-