ID: uc002eow.2_intron_1_0_chr16_66592252_f.3p
GENE: (2)
chr16:66596825-66597074+


(1)
B-CELL
(2)
BRAIN
(1)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(1)
HEART
(2)
LIVER
(2)
OTHER
(3)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
ATGTCGGCCAGGCTGGTCTCAAACTCCAGGCTTCAAGTGATCTGTCTGCCTTCCAAAGTGCTGGGATTACAGGCGGGAGCCAGTGCATTCTGCCTGCTGACTTTGTTTTTTGTTGTTGTTGTTTTTTTGTTTTTTGTTTTTCCTTTTTAGCATTGCTTGGTAGTCTTCATGTAAGGCTCAGCTTTATTGTGTGTTTTTAGGATATTATCAACTCACTGGTAACAACAGTATTCATGCTCATCGTATCTGT
.....................................................(((((.((..((.((((((((((((((....)).))))))))).)))))..)).)))))..........................................................................................................................................
..................................................51..................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532930(GSM532930)
G702T. (cervix)
..........................................................................................................................TTTTTTGTTTTTTGTTTTTCCTAGG.......................................................................................................2512.000.003.009.00-------------------
......................................................................................................................TTGTTTTTTTGTTTTTTGTTTTCCTC..........................................................................................................263.000.001.002.00-------------------
..............................................................GGGATTACAGGCGGGTT...........................................................................................................................................................................172.000.00-------2.00-------------
....................................................................................................CTTTGTTTTTTGTTGTTGTTGTTTTCCC..........................................................................................................................282.000.002.00--------------------
........................................................AGTGCTGGGATTACAGGCGGGCCC..........................................................................................................................................................................242.000.002.00--------------------
.........................................................................................................................TTTTTTTGTTTTTTGTTTTTCTGGG........................................................................................................252.000.00--2.00------------------
.TGTCGGCCAGGCTGGTCTCAAACTCCGGGC...........................................................................................................................................................................................................................302.000.002.00--------------------
......................................................................................................................TTGTTTTTTTGTTTTTTGTTTTTCTCTG........................................................................................................282.000.00--2.00------------------
.......................................................................................................................TGTTTTTTTGTTTTTTGTTTTTCTTCC........................................................................................................272.000.001.001.00-------------------
............................................................................................................................TTTTGTTTTTTGTTTTTCCTCTTC......................................................................................................242.000.002.00--------------------
........................................................AGTGCTGGGATTACAGGCGGAGCT..........................................................................................................................................................................241.000.001.00--------------------
........................................................................................................................GTTTTTTTGTTTTTTGTTCTGG............................................................................................................221.000.001.00--------------------
.........................................................................................................................................................................................................................GGTAACAACAGTATTCATGC.............2011.001.00-------------------1.00-
.......................................................AAGTGCTGGGATTACAGGCGGGCATT.........................................................................................................................................................................261.000.001.00--------------------
.........................................................................................................................................................................................................ATATTATCAACTCACTGGTAACAACAGTATTC.................3211.001.00----------------1.00----
................................................................GATTACAGGCGGGAGCGT........................................................................................................................................................................181.000.00--1.00------------------
........................................................AGTGCTGGGATTACAGGCGGGCCAC.........................................................................................................................................................................251.000.001.00--------------------
.......................................................................................................................TGTTTTTTTGTTTTTTGTTTTTCTC..........................................................................................................251.000.001.00--------------------
...............................................................................................................................TGTTTTTTGTTTTTCCGGGC.......................................................................................................201.000.001.00--------------------
...................................................................................................................TTGTTGTTTTTTTGTTTTTTGTTTTCGAG..........................................................................................................291.000.00-1.00-------------------
.........................................................................................................................TTTTTTTGTTTTTTGTTTTTCCTTTTC......................................................................................................2721.000.501.00--------------------
..........................................................................................................................TTTTTTGTTTTTTGTTTTTCCTGATT......................................................................................................261.000.00-1.00-------------------
.............................................................................................................TTGTTGTTGTTGTTTTTTTGTTTCGAG..................................................................................................................271.000.00-1.00-------------------
........................................................................................................................................TTTTTCCTTTTTAGCCGG................................................................................................181.000.001.00--------------------
.........................................................................................CTGCCTGCTGACTTTGTTTTTTGCTG.......................................................................................................................................261.000.001.00--------------------
.......................................................................................................................TGTTTTTTTGTTTTTTGTTTTAATC..........................................................................................................251.000.001.00--------------------
.....................................................................................................................................................................................................................CACTGGTAACAACAGTATTCATGC.............2411.001.00---------1.00-----------
.......................................................................................................................TGTTTTTTTGTTTTTTGTTTTTCCTCC........................................................................................................271.000.00-1.00-------------------
...........................................................................................................................TTTTTGTTTTTTGTTTTTCCTTTTGCA....................................................................................................271.000.001.00--------------------
.................................................................................................................................TTTTTTGTTTTTCCTTTGGG.....................................................................................................201.000.001.00--------------------
.................................................................................................................TGTTGTTGTTTTTTTGTTTCCTG..................................................................................................................231.000.00-1.00-------------------
...................................................................................................................TTGTTGTTTTTTTGTTTTTTGTTC...............................................................................................................241.000.00-1.00-------------------
..............................................................................................................................TTGTTTTTTGTTTTTCCTTTTTAGT...................................................................................................251.000.001.00--------------------
....................................................................................................................TGTTGTTTTTTTGTTTACAG..................................................................................................................201.000.00--------------1.00------
.......................................................................................................TGTTTTTTGTTGTTGTTGTTTTTCACT........................................................................................................................271.000.001.00--------------------
.........................................................................................................................TTTTTTTGTTTTTTGTCGGC.............................................................................................................201.000.001.00--------------------
.......................................................................................................................TGTTTTTTTGTTTTTTGTTTCCCC...........................................................................................................241.000.001.00--------------------
..........................................................TGCTGGGATTACAGGCGGGAGTTTT.......................................................................................................................................................................251.000.00------------1.00--------
.TGTCGGCCAGGCTGGTCTGAAC...................................................................................................................................................................................................................................221.000.001.00--------------------
.........................................................................................................................TTTTTTTGTTTTTTGTTAGTG............................................................................................................211.000.00-1.00-------------------
.........................................................................................................................TTTTTTTGTTTTTTGTTTTTCCTTATG......................................................................................................271.000.00--1.00------------------
.......................................................................................................................TGTTTTTTTGTTTTTTGTTTCGAG...........................................................................................................241.000.001.00--------------------
................................................................................................................................GTTTTTTGTTTTTCCTTTTTCAAG..................................................................................................241.000.00--1.00------------------
.......................................................AAGTGCTGGGATTACAGGCGGGCCA..........................................................................................................................................................................251.000.00-1.00-------------------
......................................................................................................TTGTTTTTTGTTGTTGTTGTTTCAGG..........................................................................................................................261.000.001.00--------------------
...............................................................................................................................TGTTTTTTGTTTTTCCGT.........................................................................................................181.000.001.00--------------------
..........................................................TGCTGGGATTACAGGCGGGCCAC.........................................................................................................................................................................231.000.001.00--------------------
...TCGGCCAGGCTGGTCTCAGAA..................................................................................................................................................................................................................................211.000.00-----------------1.00---
....................................................................................................................TGTTGTTTTTTTGTTTTTTGTCTT..............................................................................................................241.000.00-1.00-------------------
....................................................................................................................TGTTGTTTTTTTGTTTTTTCCC................................................................................................................221.000.001.00--------------------
.TGTCGGCCAGGCTGGTCTCACCCG.................................................................................................................................................................................................................................241.000.00-1.00-------------------
..........................................................TGCTGGGATTACAGGCGGGCCAG.........................................................................................................................................................................231.000.00-1.00-------------------
.................................................................................................................................TTTTTTGTTTTTCCTTTTTAAACT.................................................................................................241.000.00--1.00------------------
..................................................................................................................GTTGTTGTTTTTTTGTTTTTTGTTTTTC............................................................................................................2811.001.001.00--------------------
....................................................................................................................TGTTGTTTTTTTGTTTTTTGTTTTTCGAG.........................................................................................................291.000.00-1.00-------------------
.............................................................TGGGATTACAGGCGGGAGCCCCCC.....................................................................................................................................................................241.000.001.00--------------------
..........................................................TGCTGGGATTACAGGCGGGAGCCAGAG.....................................................................................................................................................................271.000.00--1.00------------------
.......................................................................................................................TGTTTTTTTGTTTTTTGTTTTTCTTTT........................................................................................................271.000.001.00--------------------
................................................................................................................TTGTTGTTGTTTTTTTGTTTTCTCT.................................................................................................................251.000.001.00--------------------
.......................................................................................................................TGTTTTTTTGTTTTTTGTTTGGGG...........................................................................................................241.000.001.00--------------------
.......................................................................................................TGTTTTTTGTTGTTGTTGTTTTTTAGG........................................................................................................................271.000.00-1.00-------------------
....................................................................................................................TGTTGTTTTTTTGTTTTTTCCTT...............................................................................................................231.000.001.00--------------------
....................................................................................................................TGTTGTTTTTTTGTTTTTTGTTTTTCTTG.........................................................................................................291.000.001.00--------------------
...........................................................................................................................................................................................................................TAACAACAGTATTCATGC.............1811.001.00--------1.00------------
.....................................................................................................TTTGTTTTTTGTTGTTGTTGTTTTTCTGC........................................................................................................................291.000.00-1.00-------------------
..........................................................................................................................TTTTTTGTTTTTTGTTTTTCCTAGGA......................................................................................................261.000.001.00--------------------
......................................................................................................TTGTTTTTTGTTGTTGTTGTTTTTCTG.........................................................................................................................271.000.00-1.00-------------------
........................................................................................................................GTTTTTTTGTTTTTTGTTTCCC............................................................................................................221.000.00-1.00-------------------
........................................................................................................................GTTTTTTTGTTTTTTGTTTTGGCC..........................................................................................................241.000.00-1.00-------------------
.............................................................................................................................TTTGTTTTTTGTTTTTCCCAGG.......................................................................................................221.000.001.00--------------------
.............................................................................................................TTGTTGTTGTTGTTTTTTTGTTATT....................................................................................................................251.000.00-1.00-------------------
......................................................AAAGTGCTGGGATTACAGGCGGGCCAG.........................................................................................................................................................................271.000.00--1.00------------------
...................................................................................................................TTGTTGTTTTTTTGTTTTTTGTTTTTTGTC.........................................................................................................301.000.00-1.00-------------------
..........................................................................................................................TTTTTTGTTTTTTGTTTTTCCCAGG.......................................................................................................251.000.00-1.00-------------------
...............................................................................................................................TGTTTTTTGTTTTTCCTAC........................................................................................................191.000.001.00--------------------
.................................................................................................................TGTTGTTGTTTTTTTGTTTTTTCT.................................................................................................................241.000.001.00--------------------
...........................................................................................................................TTTTTGTTTTTTGTTTTTCCTTTTT......................................................................................................2520.500.500.50--------------------
.........................................................................................................................TTTTTTTGTTTTTTGTTTTTCCTTTT.......................................................................................................2620.500.500.50--------------------
......................................................................................................................TTGTTTTTTTGTTTTTTGTTTTTCC...........................................................................................................2550.200.200.20--------------------

Antisense strand
ATGTCGGCCAGGCTGGTCTCAAACTCCAGGCTTCAAGTGATCTGTCTGCCTTCCAAAGTGCTGGGATTACAGGCGGGAGCCAGTGCATTCTGCCTGCTGACTTTGTTTTTTGTTGTTGTTGTTTTTTTGTTTTTTGTTTTTCCTTTTTAGCATTGCTTGGTAGTCTTCATGTAAGGCTCAGCTTTATTGTGTGTTTTTAGGATATTATCAACTCACTGGTAACAACAGTATTCATGCTCATCGTATCTGT
.....................................................(((((.((..((.((((((((((((((....)).))))))))).)))))..)).)))))..........................................................................................................................................
..................................................51..................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532930(GSM532930)
G702T. (cervix)
....CGGCCAGGCTGGTCTCAAGCG................................................................................................................................................................................................................................. 213.000.003.00--------------------
..GTCGGCCAGGCTGGTCTGGTG................................................................................................................................................................................................................................... 213.000.002.001.00-------------------
..........GGCTGGTCTCAAACTCCAGGCTTCAAGGGG.................................................................................................................................................................................................................. 302.000.00-2.00-------------------
...................................................................................................................................................................................................................................ATACGATGAGCATGAATAC.... 1912.002.00---2.00-----------------
..............................................................................................................................................CTTTTTAGCATTGCTTCG.......................................................................................... 182.000.00-----2.00---------------
..GTCGGCCAGGCTGGTCTCAGGTG................................................................................................................................................................................................................................. 231.000.001.00--------------------
..GTCGGCCAGGCTGGTCTGGCG................................................................................................................................................................................................................................... 211.000.001.00--------------------
..GTCGGCCAGGCTGGTCTCAGATG................................................................................................................................................................................................................................. 231.000.00-1.00-------------------
..........CCTGGAGTTTGAGACCAGCC............................................................................................................................................................................................................................ 2001.001.00------1.00--------------
..GTCGGCCAGGCTGGTCTCAAGGCG................................................................................................................................................................................................................................ 241.000.00-1.00-------------------
....................................................................................................................TGTTGTTTTTTTGTTTTTGTAT................................................................................................................ 221.000.00-------------1.00-------
....................................................................................................................TGTTGTTTTTTTGTTTTTTGAGA............................................................................................................... 231.000.00----------1.00----------
..GTCGGCCAGGCTGGTCTGATG................................................................................................................................................................................................................................... 211.000.00-1.00-------------------
..GTCGGCCAGGCTGGTCTCAAACTGG............................................................................................................................................................................................................................... 251.000.00-1.00-------------------
..GTCGGCCAGGCTGGTCTCAGG................................................................................................................................................................................................................................... 211.000.001.00--------------------
...AGTTTGAGACCAGCCTGGCCGA................................................................................................................................................................................................................................. 2201.001.00------1.00--------------
.....................................................................................................................................................................................................................ATACTGTTGTTACCAGTG................... 1811.001.00---1.00-----------------
....CGGCCAGGCTGGTCTCAAACTCGCG............................................................................................................................................................................................................................. 251.000.00--------1.00------------
........CAGGCTGGTCTCAAACTCCAGGCTTACC...................................................................................................................................................................................................................... 281.000.00-1.00-------------------
.TGTCGGCCAGGCTGGTCTCAGGGG................................................................................................................................................................................................................................. 241.000.001.00--------------------
..GTCGGCCAGGCTGGTCTGGGG................................................................................................................................................................................................................................... 211.000.001.00--------------------
..............................................................................................................TGTTGTTGTTGTTTTTTTTACC...................................................................................................................... 221.000.00------------------1.00--
....................................................CCAAAGTGCTGGGATTACAGGCGGTGG........................................................................................................................................................................... 271.000.00---------------1.00-----
..GTCGGCCAGGCTGGTCTCAAAGGTG............................................................................................................................................................................................................................... 251.000.00-1.00-------------------
...........................................................GGCTCCCGCCTGTAATCCCAGC......................................................................................................................................................................... 2201.001.00----1.00----------------
..GTCGGCCAGGCTGGTCTCAAAGCGG............................................................................................................................................................................................................................... 251.000.001.00--------------------
..............................AGCACTTTGGAAGGCAGACAGATCACTTGAAG............................................................................................................................................................................................ 3211.001.00-----------1.00---------
..GTCGGCCAGGCTGGTCTCAGGCG................................................................................................................................................................................................................................. 231.000.001.00--------------------
.....................................................................................................AAAAAAACAACAACAACAAAAAACAAA.......................................................................................................................... 2790.110.11--------------------0.11