ID: uc002eoc.1_intron_1_0_chr16_58709959_r
GENE: SLC38A7(6)
chr16:58709909-58710242-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(5)
BREAST 		(15)
CELL-LINE 		(1)
FIBROBLAST 		(7)
HEART 		(4)
HELA 		(2)
LIVER 		(3)
OTHER 		(19)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCTGGATGGCTGTGTTCAATGCCATGCCCACCATCTGCTTCGGATTTCAGGTGCCAGTGCCAGTTGCAAGGTCCCTGCTGTCCCCTTAGATCACCCCACCCTGGGATGGAACCCAGCAAGGAGGAGGAACCCAGGCAGAATGGAGGAAATCCTGGGGGGAAGGATGGAACAGGGGCCTCAGGACTTGCCCCTTGTTCCTGGGGTCTTTGTTCCCAAGGTACCTTCCTCTGGAAACTGGGGTTGAGGTCATTTCCCCACCATGACGGTGCCCTTCACCTGGACAGTGCCACGTCAGCAGTGTGCCCGTCTTCAACAGCATGCAGCAGCCTGAAGT
....................................................................................................(((((......)))))((((...((((..(((...((...))......(((((.......)))))......))).))))....))))...................................................................................................................................................
................................................................................................97........................................................................................187.................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR038855(GSM458538)
D10. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038853(GSM458536)
MELB. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGA.......................................................................................................................................................20112.0012.009.00-1.00---2.00------------------------------------------------------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGACT.....................................................................................................................................................22112.0012.005.00--1.00--1.00------1.00-1.00--------1.00------------1.00-------------------1.00---
..................................................................................................................................................................GATGGAACAGGGGCCTCAGG........................................................................................................................................................2018.008.00-6.00-1.00----------------------------------1.00----------------------
................................ATCTGCTTCGGATTTCAG............................................................................................................................................................................................................................................................................................1818.008.00--3.00---------1.00-2.00---1.00-----------------------------------1.00------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGAC......................................................................................................................................................2115.005.002.00-1.00---------1.00------1.00-----------------------------------------
..................................CTGCTTCGGATTTCAG............................................................................................................................................................................................................................................................................................1615.005.00----3.00---1.00----------------------------------------1.00-----------
.................................TCTGCTTCGGATTTCAG............................................................................................................................................................................................................................................................................................1714.004.00-----------2.00-------------1.00------------------1.00----------------
..................................................................................................................................................................GATGGAACAGGGGCCTCAGGAA......................................................................................................................................................2213.001.00---2.00----------------------------1.00----------------------------
....................................................................................................................................................................TGGAACAGGGGCCTCAGGATT.....................................................................................................................................................212.000.001.00-----------------------------1.00------------------------------
...........................................ATTTCAGGTGCCAGTGCCAGT..............................................................................................................................................................................................................................................................................2112.002.00----------2.00--------------------------------------------------
....................................................................................................................................................................TGGAACAGGGGCCTCAGGAT......................................................................................................................................................202.000.00-----------------1.00---------------------------------1.00---------
..........................................................................................................................................................................................................................................CTGGGGTTGAGGTCATTTCCCCACCATGACGG....................................................................3212.002.00--------------------------1.00----1.00-----------------------------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGAG......................................................................................................................................................2112.0012.00-2.00-----------------------------------------------------------
..............................................................................................................................................................................................................................................................................................CCACGTCAGCAGTGTGCC..............................1811.001.00-----------------------1.00-------------------------------------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGACTAAT..................................................................................................................................................2511.0012.00--1.00----------------------------------------------------------
.....................................................................................................TGGGATGGAACCCAGTCTC......................................................................................................................................................................................................................191.000.00-------------------------------------------1.00-----------------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGG........................................................................................................................................................1911.001.001.00------------------------------------------------------------
.................................TCTGCTTCGGATTTCAGGTG.........................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------1.00--------------------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGATAT....................................................................................................................................................2311.0012.00-------------------------------------------------------1.00-----
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGAT......................................................................................................................................................2111.0012.001.00------------------------------------------------------------
......................................................................................................................AGGAGGAGGAACCCAGGCAGA...................................................................................................................................................................................................2111.001.00---------------------1.00---------------------------------------
..............................CCATCTGCTTCGGATTTCAGG...........................................................................................................................................................................................................................................................................................2111.001.001.00------------------------------------------------------------
..................................................................................................................................................................GATGGAACAGGGGCCTCAGGA.......................................................................................................................................................2111.001.001.00------------------------------------------------------------
....................................................................................................................................................................TGGAACAGGGGCCTCAGGAAGA....................................................................................................................................................221.000.00------------------------------------1.00------------------------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGATT.....................................................................................................................................................2211.0012.00--1.00----------------------------------------------------------
..................ATGCCATGCCCACCATCTGCTTC.....................................................................................................................................................................................................................................................................................................2311.001.00-----------------------------------------------------1.00-------
...........................................................................................................................................................................................CCCCTTGTTCCTGGGGTCTTTGTTC..........................................................................................................................2511.001.00-----------------------------------------------1.00-------------
....................................................................................................................................................................................................................................TGGAAACTGGGGTTGAGGTTTCC...................................................................................231.000.00---------------------------------------------1.00---------------
......................CATGCCCACCATCTGCTTCGGATTTCAG............................................................................................................................................................................................................................................................................................2811.001.00-----------------------------1.00-------------------------------
...........................................................................................................................GAGGAACCCAGGCAGAATGGAGGAAATCCTG....................................................................................................................................................................................3111.001.00---------------------------------------1.00---------------------
.................................................................................................................................................................GGATGGAACAGGGGCCTCAGGA.......................................................................................................................................................2211.001.00----------------------------1.00--------------------------------
....................................................................................................................................................................TGGAACAGGGGCCTCAGGACTTGC..................................................................................................................................................2411.001.00---------------1.00---------------------------------------------
.........................................................................................................................AGGAGGAACCCAGGCAGAATGGAGG............................................................................................................................................................................................2511.001.00---------------------------------1.00---------------------------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGACTT....................................................................................................................................................2311.001.00----------------------------------1.00--------------------------
...................................................................................................................................................................ATGGAACAGGGGCCTCAGGAAA.....................................................................................................................................................2211.0012.00--------------------1.00----------------------------------------
...............................................................................................................CCCAGCAAGGAGGAGGAACCCAGGC......................................................................................................................................................................................................2511.001.00----------------------------------------------------1.00--------
....................................................................................................................................................................TGGAACAGGGGCCTCAGGACT.....................................................................................................................................................2130.330.33------------------------------------------------------------0.33

Antisense strand
CCTGGATGGCTGTGTTCAATGCCATGCCCACCATCTGCTTCGGATTTCAGGTGCCAGTGCCAGTTGCAAGGTCCCTGCTGTCCCCTTAGATCACCCCACCCTGGGATGGAACCCAGCAAGGAGGAGGAACCCAGGCAGAATGGAGGAAATCCTGGGGGGAAGGATGGAACAGGGGCCTCAGGACTTGCCCCTTGTTCCTGGGGTCTTTGTTCCCAAGGTACCTTCCTCTGGAAACTGGGGTTGAGGTCATTTCCCCACCATGACGGTGCCCTTCACCTGGACAGTGCCACGTCAGCAGTGTGCCCGTCTTCAACAGCATGCAGCAGCCTGAAGT
....................................................................................................(((((......)))))((((...((((..(((...((...))......(((((.......)))))......))).))))....))))...................................................................................................................................................
................................................................................................97........................................................................................187.................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR038855(GSM458538)
D10. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038853(GSM458536)
MELB. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
.....................................................................................TTAGATCACCCCACCAA........................................................................................................................................................................................................................................ 178.000.00-----1.00-2.00--------1.00------------------------1.00----1.00-1.00-------1.00----
.....................................................................................TTAGATCACCCCACCCAA....................................................................................................................................................................................................................................... 186.000.00-----2.00-1.001.00-------------1.00---------------------------1.00----------
.....................................................................................TTAGATCACCCCACCCAC....................................................................................................................................................................................................................................... 181.000.00--------1.00----------------------------------------------------
.................................................GGTGCCAGTGCCAGTAT............................................................................................................................................................................................................................................................................ 171.000.00---------------------------1.00---------------------------------
....................................................................................................................................................................................................................................................................TGACGGTGCCCTTCACTGT....................................................... 191.000.00------------------------------------------1.00------------------
....................................................................................................CTGGGATGGAACCCAGCGG....................................................................................................................................................................................................................... 191.000.00-------------1.00-----------------------------------------------
.............................................................................................................................................................GGAAGGATGGAACAGAGC............................................................................................................................................................... 181.000.00-----------------------------------1.00-------------------------
........................................................................................................GATGGAACCCAGCAAGAG.................................................................................................................................................................................................................... 181.000.00----------------------------------------------------------1.00--
.........................................................................................TCCCAGGGTGGGGTGAT.................................................................................................................................................................................................................................... 1720.500.50-----------------------------------------------------------0.50-