ID: uc002eob.1_intron_6_0_chr16_58711329_r.3p
GENE: (4)
chr16:58711279-58711528-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(5)
BRAIN 		(2)
BREAST 		(5)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(6)
HELA 		(3)
LIVER 		(4)
OTHER 		(2)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTTGGCTGTCCAGCTCCTTCCTAGCTGTGGCAGGTTTCTCTGAAACTACTTCTCAGGCGTTTCCTGAGTCTGCTTGGCATAGTCTCCGGTTCATTCAGTGGACACTTGTGGTCGCTAGAGCTGAAGGTGGATGTCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAGCTTCCTGAGCGTCGTGGGTACCTGGTACGTCACAGCCATCGTTATCATCA
................................................................................................((((..((....))..)))).((((((..((((..(((((((((..((....((......)).))..)))))))))....))))))).)))...............................................................
............................................................................................93.............................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189784DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
.....................................................................................................................................TCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAG..................................................6719.009.001.008.00--------------------------------
....................................................................................................................................GTCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAG..................................................6819.009.009.00---------------------------------
........................................................................................................................................CTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCA...................................................6318.008.008.00---------------------------------
..............................................................................................................................GTGGATGTCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAG..................................................7416.006.00-6.00--------------------------------
.....................................................................................................................................TCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAGA.................................................6816.009.00-6.00--------------------------------
.......................................................................................................................................CCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAG..................................................6516.006.006.00---------------------------------
........................................................................................................................................CTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAG..................................................6414.004.004.00---------------------------------
..........................................AAACTACTTCTCAGGCACTG............................................................................................................................................................................................203.000.00--3.00-------------------------------
................................................................................................................................................................CAGCTGGGGATGAGGACACTTAGA..................................................................2413.002.00----3.00-----------------------------
....................................................................................................................................GTCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGG.....................................................6513.003.003.00---------------------------------
........................................................................................................................................................................................................CTTCCTGAGCGTCGTCGGC...............................192.000.00----------2.00-----------------------
....................................................................................................................................................................................TAGTCTCTCCTTCCCGGCAGT.................................................212.000.00------2.00---------------------------
....................................................................................................................................GTCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGC....................................................6612.002.00---2.00------------------------------
...............................................................................................................................................................GCAGCTGGGGATGAGGACACTTA....................................................................2312.002.00---------1.00-1.00----------------------
.........................................................................................................................................TAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCA...................................................6212.002.00---2.00------------------------------
................................................................................................................................................................CAGCTGGGGATGAGGACACTTAG...................................................................2312.002.00---------------------------1.001.00-----
.................................................................................................GTGGACACTTGTGGTCGCTAGAGC.................................................................................................................................2412.002.00-------2.00--------------------------
...........................................................................................................................................................................................................................................CCATCGTTATCATCATTA181.000.00--------------1.00-------------------
...............................................................................................................................................................GCAGCTGGGGATGAGGACAGTT.....................................................................221.000.00----------------------1.00-----------
................................................................................................................................................................CAGCTGGGGATGAGGAAACT......................................................................201.000.00-----------------1.00----------------
....................................................................................................................................GTCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAGA.................................................6911.009.00-1.00--------------------------------
................................................................................................................................................................CAGCTGGGGATGAGGACACTTT....................................................................221.000.00-------------------------------1.00--
............................................................................................................................................................GAGGCAGCTGGGGATGACGTC.........................................................................211.000.00-----------------------------1.00----
...............................................................................................................................................................GCAGCTGGGGATGAGGACACT......................................................................2111.001.00---------1.00------------------------
................................................................................................................................................................CAGCTGGGGATGAGGACACTTAGTT.................................................................251.000.00-------------------1.00--------------
...............................................................................................................................................................GCAGCTGGGGATGAGGACACTTAGTC.................................................................2611.001.00------------------------1.00---------
..........................................AAACTACTTCTCAGGCACTT............................................................................................................................................................................................201.000.00--1.00-------------------------------
...................................................................................................................................................................................TTAGTCTCTCCTTCCCGGCAGTT................................................231.000.00-----1.00----------------------------
.............................................................................................................................................................AGGCAGCTGGGGATGGGGC..........................................................................191.000.00------------1.00---------------------
..........................................................................................................................................................................................................TCCTGAGCGTCGTGGGTACCT...........................2111.001.00-------------1.00--------------------
...........................................................................................................................................................AGAGGCAGCTGGGGATGAG............................................................................1911.001.00--------------------------------1.00-
......................................................................................................................................................................................................AGCTTCCTGAGCGTCGTGGGT...............................2111.001.00----------------1.00-----------------
......................................................................................................................................CCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAG..................................................6611.001.00--------1.00-------------------------
.....................................................................................................................................TCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCA...................................................6611.001.00--------1.00-------------------------
................................................................................................................................................................................CACTTAGTCTCTCCTTCCCGGCA...................................................2311.001.00-------------------------1.00--------
............................................................................................................................................................GAGGCAGCTGGGGATGAGGACACTT.....................................................................2511.001.00---------------1.00------------------
...............................................................................................................................................................GCAGCTGGGGATGAGGACACTTAG...................................................................2411.001.00---------------------1.00------------

Antisense strand
GTTGGCTGTCCAGCTCCTTCCTAGCTGTGGCAGGTTTCTCTGAAACTACTTCTCAGGCGTTTCCTGAGTCTGCTTGGCATAGTCTCCGGTTCATTCAGTGGACACTTGTGGTCGCTAGAGCTGAAGGTGGATGTCCCTAGGGGTGGAATCAGATAAGAGGCAGCTGGGGATGAGGACACTTAGTCTCTCCTTCCCGGCAGCTTCCTGAGCGTCGTGGGTACCTGGTACGTCACAGCCATCGTTATCATCA
................................................................................................((((..((....))..)))).((((((..((((..(((((((((..((....((......)).))..)))))))))....))))))).)))...............................................................
............................................................................................93.............................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189784DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
......TGTCCAGCTCCTTCCTCA.................................................................................................................................................................................................................................. 181.000.00------------------------------1.00---
...........................................AACTACTTCTCAGGCGAG............................................................................................................................................................................................. 181.000.00--------------------1.00-------------
.............................................................................................................................................................AGGCAGCTGGGGATGAACCC......................................................................... 201.000.00--------------------------1.00-------
..........................................................................................................................................................................................CTCCTTCCCGGCAGCGGA.............................................. 181.000.00-----1.00----------------------------
................................................................................................................................................................................CACTTAGTCTCTCCTTAACC...................................................... 201.000.00------------------1.00---------------
........................................................................................................................................................................................CTCTCCTTCCCGGCATAAG............................................... 191.000.00-----------------------1.00----------
.....AGGAAGGAGCTGGACAG.................................................................................................................................................................................................................................... 1720.500.50---------------------------------0.50