ID: uc002elz.1_intron_8_0_chr16_57690530_f.3p
GENE: GPR56(9)
chr16:57691085-57691334+


(1)
AGO2.ip 		(5)
BRAIN 		(3)
BREAST 		(7)
CELL-LINE 		(6)
CERVIX 		(2)
HELA 		(1)
OTHER 		(8)
SKIN

Sense strand
GCTTGAGAATGTGGTCAAATCTAAAGATGCCCCCACTCCAGAAAAATGCACTTATGGGACCACATTCTGCTCAGTTGGGAGAGGGGGTTCTTAGGCTTCCGAGGCCCACCAGGGACCCCAGGTTAGCCCCTCACGCAGGGCAAGCCTCCAGGTTGTGTGGGGGACACAGAGGCCAGCTCTCTCCTGTCTCCTGGGGCCAGGTCTCCTCGGTGGAGGTGGACGCCGTGCACAAGCACTACCTGAGCCTCCT
.................................................................(((.(((....)))))).(((((((((.((((.....))))....)))))))))........(((((((((((((....)))......)))))))))).......................................................................................
...............................................................64...................................................................................................165...................................................................................
SizePerfect hitTotal NormPerfect NormSRR040009(GSM532894)
G727T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029125(GSM416754)
U2OS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM956925PAZD5SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR040038(GSM532923)
G531N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................GCTCAGTTGGGAGAGCACC...................................................................................................................................................................19068.001.0065.003.00--------------------------------
....................................................................GCTCAGTTGGGAGAGCAC....................................................................................................................................................................18059.001.0059.00---------------------------------
....................................................................GCTCAGTTGGGAGAGCGC....................................................................................................................................................................1803.001.00-----------------1.00-----1.00-------1.00--
............................................................................................................................................CAAGCCTCCAGGTTGTGTGGG.........................................................................................2112.002.00----2.00-----------------------------
............................................................................................................................................................................................................CCTCGGTGGAGGTGGACGCCGTGCACAAGC................3011.001.00---------1.00------------------------
............................................................................................................................................................................................................CCTCGGTGGAGGTGGACG............................1811.001.00---1.00------------------------------
...............................................................................AGAGGGGGTTCTTAGTAGA........................................................................................................................................................191.000.00-------------------1.00--------------
.......................................................................................................................................................................................................................GTGGACGCCGTGCACAAGCACTACCTGA.......2811.001.00--1.00-------------------------------
............................................................................................................................................................................................................CCTCGGTGGAGGTGGACGC...........................1911.001.00-------------------------1.00--------
....................................................................GCTCAGTTGGGAGAGAA.....................................................................................................................................................................1701.001.00----------------1.00-----------------
...................................................................................................................................................................................TCTCCTGTCTCCTGGGGCCAGA.................................................2211.001.00------------------------1.00---------
...........................TGCCCCCACTCCAGAAAAATGCACT......................................................................................................................................................................................................2511.001.00---------------------1.00------------
.............................................................................................................................................................................................................CTCGGTGGAGGTGGACGCCGTGC......................2311.001.00------------------1.00---------------
...........................................................................TGGGAGAGGGGGTTCTCTAT...........................................................................................................................................................201.000.00----------1.00-----------------------
......................................................................TCAGTTGGGAGAGGGGTA..................................................................................................................................................................181.000.00----------------------1.00-----------
....................................................................GCTCAGTTGGGAGAGCGCC...................................................................................................................................................................1901.001.001.00---------------------------------
....................................................................GCTCAGTTGGGAGAGCCCC...................................................................................................................................................................1901.001.001.00---------------------------------
....................................................................GCTCAGTTGGGAGAGCGTC...................................................................................................................................................................1901.001.001.00---------------------------------
..............................................................................................................................................................................................................TCGGTGGAGGTGGACGCCGTGCC.....................231.000.00------------1.00---------------------
.......................................................................CAGTTGGGAGAGGGGGGAT................................................................................................................................................................191.000.00--1.00-------------------------------
....................................................................GCTCAGTTGGGAGAGA......................................................................................................................................................................1601.001.00--------1.00-------------------------
............................................................................................................................................................................................................CCTCGGTGGAGGTGGACGCC..........................2011.001.00---1.00------------------------------
....................................................................GCTCAGTTGGGAGAGCGA....................................................................................................................................................................1801.001.001.00---------------------------------
................................................................................................................................................................................................................GGTGGAGGTGGACGCCCCC.......................191.000.00----------------------------1.00-----
..........................................................................................................................................................................................................CTCCTCGGTGGAGGTGGACGCCGT........................2411.001.00-----------------------------1.00----
......................................................................TCAGTTGGGAGAGGGGGGTA................................................................................................................................................................201.000.00--------------------------1.00-------
....................................................................GCTCAGTTGGGAGAG.......................................................................................................................................................................1501.001.00--------------1.00-------------------
.................................................................................................................................................................................................................GTGGAGGTGGACGCCGTGCA.....................2011.001.00---------------------------1.00------
...................................................................................................................................................................................TCTCCTGTCTCCTGGGGCCAG..................................................2111.001.00-------1.00--------------------------
.............................................................................GGAGAGGGGGTTCTTATTT..........................................................................................................................................................191.000.00------------------------------1.00---
..TTGAGAATGTGGTCACTGC.....................................................................................................................................................................................................................................191.000.00--------------------1.00-------------
....................................................................GCTCAGTTGGGAGAGAACC...................................................................................................................................................................1901.001.001.00---------------------------------
.............................................................................................................................................AAGCCTCCAGGTTGTGTGGGG........................................................................................2111.001.00-----------1.00----------------------
...................................................................TGCTCAGTTGGGAGA........................................................................................................................................................................1540.250.25---------------------------------0.25

Antisense strand
GCTTGAGAATGTGGTCAAATCTAAAGATGCCCCCACTCCAGAAAAATGCACTTATGGGACCACATTCTGCTCAGTTGGGAGAGGGGGTTCTTAGGCTTCCGAGGCCCACCAGGGACCCCAGGTTAGCCCCTCACGCAGGGCAAGCCTCCAGGTTGTGTGGGGGACACAGAGGCCAGCTCTCTCCTGTCTCCTGGGGCCAGGTCTCCTCGGTGGAGGTGGACGCCGTGCACAAGCACTACCTGAGCCTCCT
.................................................................(((.(((....)))))).(((((((((.((((.....))))....)))))))))........(((((((((((((....)))......)))))))))).......................................................................................
...............................................................64...................................................................................................165...................................................................................
SizePerfect hitTotal NormPerfect NormSRR040009(GSM532894)
G727T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029125(GSM416754)
U2OS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM956925PAZD5SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR040038(GSM532923)
G531N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
......................................CAGAAAAATGCACTTATATG................................................................................................................................................................................................ 202.000.00------1.00------1.00--------------------
....................................................................................................................................................................................................................................ACAAGCACTACCTGATTTG... 191.000.00---------------1.00------------------
.....................................................................................................................................................AGGTTGTGTGGGGGATAT................................................................................... 181.000.00-----1.00----------------------------
................................................................................................................................................................................CCAGGAGACAGGAGAGAG........................................................ 1830.330.33--------------------------------0.33-