ID: uc002eec.3_intron_2_0_chr16_46618002_r.5p
GENE: (10)
chr16:46629264-46629513-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(5)
B-CELL 		(14)
BRAIN 		(12)
BREAST 		(13)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
OTHER 		(2)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGACATCAGCAGAGTTTCTAATGAAGAACTCGGATTTATATGGCGCCAAGGTAGAAGCTCTTGTCCTCTTGGGGAAGTAGTTTGTGTTTAAGTTGTAAATGAATATATGAAATATGGGACCAAGATGTATGTGTGTACTCCCACTCTCTTCAGACAGTCATCTCTACCAAGTCAGTCAAACTCAACTGTGCAAGGGTCTTCTCATGTAGCATTTTCAAATGATAGGAAGAAAAGTAATACATCTCACAAT
..................................................................((((((....(((...((((((((.........)))))))).....)))....)))))).............................................................................................................................
................................................................65......................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)
.....................................................................TGGGGAAGTAGTTTGTACAG.................................................................................................................................................................2026.000.0013.002.00--2.006.00-------------1.00----------1.00---------1.00-----------------
.....................................................................TGGGGAAGTAGTTTGTGCTGT................................................................................................................................................................2118.000.00---1.001.00-1.002.00--2.00-2.00-2.00-1.00-1.00-1.00-----1.00------1.00-------1.001.00---------------
.....................................................................TGGGGAAGTAGTTTGTGTAGTT...............................................................................................................................................................2212.000.00-2.00-1.001.00-1.002.00--1.00--1.00------1.00--------1.00-----1.00----------------------
...............TTCTAATGAAGAACTCGGA........................................................................................................................................................................................................................19112.0012.00--9.00--------1.00------------------------1.00---------1.00-----------
.....................................................................TGGGGAAGTAGTTTGTATAG.................................................................................................................................................................207.000.003.002.00---1.00-------------1.00--------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTGGTT...............................................................................................................................................................227.000.00-2.00-1.00--2.001.00-----------1.00--------------------------------------
..................TAATGAAGAACTCGGATTTATATGGC..............................................................................................................................................................................................................2616.006.00---------6.00------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTTGTT...............................................................................................................................................................2216.001.00-2.00-1.001.00------------1.00----1.00-----------------------------------
.....................................................................TGGGGAAGTAGTTTGTGCT..................................................................................................................................................................195.000.00-1.00----------1.00-1.00----------------1.00------1.00-------------------
.....................................................................TGGGGAAGTAGTTTGTGCAGT................................................................................................................................................................214.000.00-1.00--------1.00--2.00--------------------------------------------
.................CTAATGAAGAACTCGGAT.......................................................................................................................................................................................................................1814.004.00--1.00-----3.00-------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTAGAG.................................................................................................................................................................203.000.003.00---------------------------------------------------------
..................................................GTAGAAGCTCTTGTCCT.......................................................................................................................................................................................1713.003.00---------------3.00------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTCGTT...............................................................................................................................................................223.000.00---1.001.00---------------------1.00-------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTTGTTT..............................................................................................................................................................2313.001.00-1.00--------------------1.00--------------------------------1.00--
...............TTCTAATGAAGAACTCGG.........................................................................................................................................................................................................................1813.003.00--3.00-------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGCTG.................................................................................................................................................................203.000.00-------1.00----1.00-----1.00---------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTATTT...............................................................................................................................................................222.000.00---1.00---------1.00--------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTTGTTA..............................................................................................................................................................2312.001.00--------------------1.00----------------------------1.00--------
.....................................................................TGGGGAAGTAGTTTGTGCAG.................................................................................................................................................................202.000.002.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGATG.................................................................................................................................................................202.000.00-----------------------------------------------------1.00---1.00
.....................................................................TGGGGAAGTAGTTTGTGTTTTT...............................................................................................................................................................222.000.00---1.00-----------------------------------1.00------------------
.......................AAGAACTCGGATTTATATGGCGCCA..........................................................................................................................................................................................................2512.002.00---------------------2.00------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTTGAT...............................................................................................................................................................2212.001.00---1.00-------------------------------------------1.00----------
...........................ACTCGGATTTATATGGCG.............................................................................................................................................................................................................1812.002.00--1.00--------1.00----------------------------------------------
...............TTCTAATGAAGAACTCGGAT.......................................................................................................................................................................................................................2012.002.00--1.00--------1.00----------------------------------------------
..................TAATGAAGAACTCGGATTTATATGGCG.............................................................................................................................................................................................................2712.002.00--------1.00---------1.00---------------------------------------
.....................................................................TGGGGAAGTAGTTTGTA....................................................................................................................................................................171.000.00----1.00-----------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGCTTT................................................................................................................................................................211.000.00-1.00--------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTACA..................................................................................................................................................................191.000.00------------1.00---------------------------------------------
...........................ACTCGGATTTATATGGCGC............................................................................................................................................................................................................1911.001.00--1.00-------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTATGG.................................................................................................................................................................201.000.00--------------------------------------------------1.00-------
....................................................................TTGGGGAAGTAGTTTGTGGTGT................................................................................................................................................................221.000.00------1.00---------------------------------------------------
..........................AACTCGGATTTATATGGCGCCAAG........................................................................................................................................................................................................2411.001.001.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGAT....................................................................................................................................................................171.000.00-----------------------1.00----------------------------------
.....................................................................TGGGGAAGTAGTTTGTTTTG.................................................................................................................................................................201.000.001.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTCGGT...............................................................................................................................................................221.000.00-----------------1.00----------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTTGGA...............................................................................................................................................................2211.001.00-------------------------1.00--------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTTCTT...............................................................................................................................................................2211.001.00-------------------------------------1.00--------------------
.....................................................................TGGGGAAGTAGTTTGTGTGGT................................................................................................................................................................211.000.00------------------------1.00---------------------------------
.....................................................................TGGGGAAGTAGTTTGTAAAG.................................................................................................................................................................201.000.001.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTAGAC.................................................................................................................................................................201.000.001.00---------------------------------------------------------
........................................................GCTCTTGTCCTCTTGTTC................................................................................................................................................................................181.000.00--------------------------------------------------------1.00-
.....................................................................TGGGGAAGTAGTTTGTGCTGC................................................................................................................................................................211.000.00--------------------------------------------1.00-------------
.....................................................................TGGGGAAGTAGTTTGAATA..................................................................................................................................................................191.000.001.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTACCG.................................................................................................................................................................201.000.001.00---------------------------------------------------------
..................................................................................................................TGGGACCAAGATGTATGTG.....................................................................................................................1911.001.00--------1.00-------------------------------------------------
......................................................................GGGGAAGTAGTTTGTACA..................................................................................................................................................................181.000.00----------------1.00-----------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGATGT................................................................................................................................................................211.000.00------------------------------------------------------1.00---
.....................................................................TGGGGAAGTAGTTTGTGTAG.................................................................................................................................................................201.000.00------------------------------------------------1.00---------
......................................................................GGGGAAGTAGTTTGTGTTGTTA..............................................................................................................................................................221.000.00------1.00---------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTTAG..................................................................................................................................................................191.000.00-----------------1.00----------------------------------------
.....................................................................TGGGGAAGTAGTTTGTACTG.................................................................................................................................................................201.000.001.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTTAGG.................................................................................................................................................................201.000.001.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTG..................................................................................................................................................................191.000.00-----------------------------1.00----------------------------
.....................................................................TGGGGAAGTAGTTTGTGCAGC................................................................................................................................................................211.000.00----1.00-----------------------------------------------------
........................................................................GGAAGTAGTTTGTGTTGGTT..............................................................................................................................................................201.000.00---------------------------------------------1.00------------
..................TAATGAAGAACTCGGATTT.....................................................................................................................................................................................................................1911.001.00--1.00-------------------------------------------------------
......................................................................GGGGAAGTAGTTTGTACAG.................................................................................................................................................................191.000.001.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTTTAG.................................................................................................................................................................201.000.001.00---------------------------------------------------------
....................ATGAAGAACTCGGATTTATATGGC..............................................................................................................................................................................................................2411.001.00-----------1.00----------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTTTC..................................................................................................................................................................191.000.00---1.00------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTAGTG...............................................................................................................................................................221.000.00-1.00--------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTT..................................................................................................................................................................1911.001.00---1.00------------------------------------------------------
..................................TTTATATGGCGCCAAGGTAGAAGCTCTTG...........................................................................................................................................................................................2911.001.00----------------------------------1.00-----------------------
.....................................................................TGGGGAAGTAGTTTGTATA..................................................................................................................................................................191.000.00-1.00--------------------------------------------------------
...................AATGAAGAACTCGGATTTATATGGCG.............................................................................................................................................................................................................2611.001.00----------------------------1.00-----------------------------
.....................................................................TGGGGAAGTAGTTTGTGTTGGT...............................................................................................................................................................2211.001.00-1.00--------------------------------------------------------
........................................................................GGAAGTAGTTTGTGTTGTTA..............................................................................................................................................................201.000.00------------------------1.00---------------------------------
.....................................................................TGGGGAAGTAGTTTGTAC...................................................................................................................................................................181.000.00-1.00--------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGGTTT................................................................................................................................................................211.000.00-1.00--------------------------------------------------------
..............................................CAAGGTAGAAGCTCTG............................................................................................................................................................................................161.000.00----------------------------------------------------1.00-----
............................CTCGGATTTATATGGCGCC...........................................................................................................................................................................................................1911.001.00----------------------------1.00-----------------------------
.....................................................................TGGGGAAGTAGTTTGTGTAGT................................................................................................................................................................211.000.00---------------------------1.00------------------------------
......................................................................GGGGAAGTAGTTTGTTTAG.................................................................................................................................................................191.000.00------1.00---------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTGG.................................................................................................................................................................201.000.00---------------------------1.00------------------------------
.....................................................................TGGGGAAGTAGTTTGAAT...................................................................................................................................................................181.000.00-------------------------1.00--------------------------------
............................CTCGGATTTATATGGCGC............................................................................................................................................................................................................1811.001.00--1.00-------------------------------------------------------
..............TTTCTAATGAAGAACTCGGA........................................................................................................................................................................................................................2011.001.00-----------1.00----------------------------------------------
......................................................................GGGGAAGTAGTTTGTATAG.................................................................................................................................................................191.000.001.00---------------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTGTTTTTT..............................................................................................................................................................231.000.00-----------------------1.00----------------------------------
.................CTAATGAAGAACTCGGATTTATATGGCG.............................................................................................................................................................................................................2811.001.00---------------------------------------------------1.00------
.....................................................................TGGGGAAGTAGTTTGTGCAA.................................................................................................................................................................201.000.00----------1.00-----------------------------------------------
..................TAATGAAGAACTCGGATTTATATGGCGT............................................................................................................................................................................................................2811.002.00--------1.00-------------------------------------------------
.....................................................................TGGGGAAGTAGTTTGTTCTT.................................................................................................................................................................201.000.00----------------1.00-----------------------------------------
.....................................................................TGGGGAAGTAGTTTGTCAAG.................................................................................................................................................................201.000.00-1.00--------------------------------------------------------
....................................TATATGGCGCCAAGGTAGA...................................................................................................................................................................................................1911.001.00-------------------------------------------1.00--------------
.....................................................................TGGGGAAGTAGTTTGTATTG.................................................................................................................................................................201.000.00---1.00------------------------------------------------------

Antisense strand
GGACATCAGCAGAGTTTCTAATGAAGAACTCGGATTTATATGGCGCCAAGGTAGAAGCTCTTGTCCTCTTGGGGAAGTAGTTTGTGTTTAAGTTGTAAATGAATATATGAAATATGGGACCAAGATGTATGTGTGTACTCCCACTCTCTTCAGACAGTCATCTCTACCAAGTCAGTCAAACTCAACTGTGCAAGGGTCTTCTCATGTAGCATTTTCAAATGATAGGAAGAAAAGTAATACATCTCACAAT
..................................................................((((((....(((...((((((((.........)))))))).....)))....)))))).............................................................................................................................
................................................................65......................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)
.............................................................................................................................................................................................GCAAGGGTCTTCTCATTT........................................... 181.000.00--------------------------------1.00-------------------------