ID: uc002ede.2_intron_2_0_chr16_32686952_r
GENE: (1)
chr16:32686902-32687106-


(1)
AGO2.ip
(3)
B-CELL
(20)
BREAST
(11)
CELL-LINE
(4)
CERVIX
(2)
HEART
(2)
LIVER
(1)
OTHER
(33)
SKIN
(1)
TESTES

Sense strand
TCAACAAAGGGCCGGTGGCCTCTCACTGCCTCCGCGGCAGGGTTGTCAAGGTAACGCTCCTCAGACAAGGGTGGGGCGCGACCCGCCCCTTTTCTCACCCCGCCTCCTCCTCAGCCCCACCCTCCTTCGCTCCTCCTCTTGTCACTCCCTTTCAGACATGCGCAGTGCGGCCCGTCCCTAGGGCTGGGTTAAGGGCCGCGGATGT
....................................................................((((((((((((....................)))..........)))))))))...................................................................................
....................................................................69...............................................................134.....................................................................
SizePerfect hitTotal NormPerfect NormTAX577589(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
GSM532876(GSM532876)
G547T. (cervix)
TAX577744(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782TAX577741(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................GGGCGCGACCCGCCCCGGG.................................................................................................................1915.000.004.003.003.00-------------1.001.00-------------1.00----------1.001.00-----------------------------------
..........................................................................................................................................................................................GGTTAAGGGCCGCGGA...16414.2514.25-----1.003.751.75-----0.75-----0.500.25--1.00----------------------------0.75--0.250.500.250.500.25-0.25-0.250.250.250.25--0.250.25-0.250.25-0.25-0.25-
..........................................................................GGCGCGACCCGCCCCGGG.................................................................................................................186.000.001.001.00--1.00---1.00-----------------1.00-----1.00----------------------------------------------
.........................................................................GGGCGCGACCCGCCCCGGGG................................................................................................................206.000.001.001.00----------------------1.001.00-------------1.00--------1.00------------------------------
.........................................................................GGGCGCGACCCGCCCCGG..................................................................................................................184.000.004.00------------------------------------------------------------------------------
........................................................................GGGGCGCGACCCGCCCCG...................................................................................................................184.000.00-----3.00--------------1.00----------------------------------------------------------
..........................................................................................................................................................................................GGTTAAGGGCCGCGGATT.1843.002.25---------1.00------------------------------------1.00---1.00----------------------------
..........................................................................GGCGCGACCCGCCCCGG..................................................................................................................173.000.00--1.00--------------------------------------1.00--1.00----------------------------------
..........................................................................................................................................................................................GGTTAAGGGCCGCGGAT..1742.252.25-0.25--0.75-0.25---------------0.25---0.25----------------------------0.25-----------0.25-----------
.........................................................................GGGCGCGACCCGCCCCCG..................................................................................................................182.000.001.00----------1.00-------------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCCTGG.................................................................................................................191.000.00--1.00----------------------------------------------------------------------------
........................................................................GGGGCGCGACCCGCCCCCG..................................................................................................................191.000.00-----1.00-------------------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCG....................................................................................................................161.000.00----------------------------------------1.00--------------------------------------
............................................................................................TCTCACCCCGCCTCCTTTT..............................................................................................191.000.00---------------1.00---------------------------------------------------------------
...................................................................................................................................................................................AGGGCTGGGTTAAGGGCCGCGGC...231.000.00---------------------------------1.00---------------------------------------------
.........................................................................GGGCGCGACCCGCCCCGGGC................................................................................................................201.000.00-1.00-----------------------------------------------------------------------------
.............................................................................................................................................................................GTCCCTAGGGCTGGGC................161.000.00---------------------1.00---------------------------------------------------------
...............................................................................................................CAGCCCCACCCTCCTATGG...........................................................................191.000.00----------------------------1.00--------------------------------------------------
..................................................................................................................................................................................TAGGGCTGGGTTAAGGGCCGCGGT...2441.000.50-------------1.00-----------------------------------------------------------------
..................................................................................................................................................................................TAGGGCTGGGTTAAGGGCCGCGGTT..2541.000.50---------1.00---------------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCCGGAG................................................................................................................201.000.001.00------------------------------------------------------------------------------
..........................................................................................................................................................................................GGTTAAGGGCCGCGGATGTTG2141.000.25-------1.00-----------------------------------------------------------------------
............................................................................................TCTCACCCCGCCTCCTGCC..............................................................................................191.000.00-1.00-----------------------------------------------------------------------------
.........................................................................................................................................................................................GGGTTAAGGGCCGCGGCT..181.000.00------------------------------------1.00------------------------------------------
..........................................................................GGCGCGACCCGCCCCGCGG................................................................................................................191.000.00----1.00--------------------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCCCGGT................................................................................................................201.000.00---------------------------------------------------1.00---------------------------
............................................................................................TCTCACCCCGCCTCCTACT..............................................................................................191.000.00----------------1.00--------------------------------------------------------------
.............................................................................................................CTCAGCCCCACCCTCCTACGA...........................................................................211.000.00------------------1.00------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCGGGG.................................................................................................................191.000.00-----------1.00-------------------------------------------------------------------
...........................................................................................................................................................................................GTTAAGGGCCGCGGA...1540.750.75------0.50--------------------------------------------------0.25---------------------
...................................................................................................................................................................................AGGGCTGGGTTAAGGGCCG.......1940.500.50----------0.25-----------------------------------------------------------------0.25--
.........................................................................................................................................................................................GGGTTAAGGGCCGCGGAT..1840.500.50-------0.25------------------------------------------------------------0.25----------
...................................................................................................................................................................................AGGGCTGGGTTAAGGGCCGCGGATG.2540.500.50---------0.50---------------------------------------------------------------------
..................................................................................................................................................................................TAGGGCTGGGTTAAGGGCCGCGG....2340.500.50---------0.25----------------------------------------------------------------0.25----
...............................................................................................................CAGCCCCACCCTCCTTCGCTC.........................................................................2140.250.25-------------------------------------------------------------0.25-----------------
.........................................................................................................................................................................................GGGTTAAGGGCCGCGGA...1740.250.25------------------------------------------------------------0.25------------------
.............................................................................................................................................................................GTCCCTAGGGCTGGGTTAAGGGCCGC......2640.250.25-------------0.25-----------------------------------------------------------------
..........................................................................................................................................................................................GGTTAAGGGCCGCGGATGT1940.250.25-----------------------------------------------------------------------0.25-------
...................................................................................................................................................................................AGGGCTGGGTTAAGGGCCGC......2040.250.25--------------------0.25----------------------------------------------------------
.............................................................................................................................................................ATGCGCAGTGCGGCCCGTC.............................1940.250.25-------------------------0.25-----------------------------------------------------
....................................................................................................................................................................................GGGCTGGGTTAAGGGCCG.......1840.250.25------------------------------------------------------------0.25------------------
..........................................................................................................................................................................................GGTTAAGGGCCGCGG....1540.250.25------0.25------------------------------------------------------------------------
..............................................................................................................................................................................TCCCTAGGGCTGGGTTAAGGGC.........2240.250.25-----------------------0.25-------------------------------------------------------
...........................................................................................................................................................................................GTTAAGGGCCGCGGAT..1640.250.25-----0.25-------------------------------------------------------------------------
..................................................................................................................................................................................TAGGGCTGGGTTAAGGGCCGCGGA...2440.250.25---------------------0.25---------------------------------------------------------
....................................................................................................................CCACCCTCCTTCGCT..........................................................................1580.120.12-----------0.12-------------------------------------------------------------------

Antisense strand
TCAACAAAGGGCCGGTGGCCTCTCACTGCCTCCGCGGCAGGGTTGTCAAGGTAACGCTCCTCAGACAAGGGTGGGGCGCGACCCGCCCCTTTTCTCACCCCGCCTCCTCCTCAGCCCCACCCTCCTTCGCTCCTCCTCTTGTCACTCCCTTTCAGACATGCGCAGTGCGGCCCGTCCCTAGGGCTGGGTTAAGGGCCGCGGATGT
....................................................................((((((((((((....................)))..........)))))))))...................................................................................
....................................................................69...............................................................134.....................................................................
SizePerfect hitTotal NormPerfect NormTAX577589(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
GSM532876(GSM532876)
G547T. (cervix)
TAX577744(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782TAX577741(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................GGCGCGACCCGCCCCGT.................................................................................................................. 178.000.00---6.001.00-------------1.00------------------------------------------------------------
..........................................................................GGCGCGACCCGCCCCGTC................................................................................................................. 185.000.00--------------2.00------------1.00------1.00--------------1.00-----------------------------
........................................................................GGGGCGCGACCCGCCCCGGG................................................................................................................. 202.000.00--------2.00----------------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCTCGG................................................................................................................. 192.000.00----------------------1.00------1.00-------------------------------------------------
.........................................................................GGGCGCGACCCGCCCGAC.................................................................................................................. 182.000.00------------2.00------------------------------------------------------------------
........................................................................GGGGCGCGACCCGCCCCGG.................................................................................................................. 191.000.00-------------------------------------1.00-----------------------------------------
.....................CTCACTGCCTCCGCGGAA...................................................................................................................................................................... 181.000.00----1.00--------------------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCGGG.................................................................................................................. 181.000.00--1.00----------------------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCGA................................................................................................................... 171.000.00-------------------1.00-----------------------------------------------------------
......................................................................................................CCTCCTCCTCAGCCCCAAGAC.................................................................................. 211.000.00--------------------------------------1.00----------------------------------------
............................................................................................TCTCACCCCGCCTCCGGA............................................................................................... 181.000.00---------------1.00---------------------------------------------------------------
.........................................................................GGGCGCGACCCGCCCGCGG................................................................................................................. 191.000.00----1.00--------------------------------------------------------------------------
................................................................................................ACCCCGCCTCCTCCTCA............................................................................................ 171.000.00--1.00----------------------------------------------------------------------------
........................................................CTCCTCAGACAAGGGGAAC.................................................................................................................................. 191.000.00-----------------------------------------------1.00-------------------------------
................................................................................................................................................CTCCCTTTCAGACATGCA........................................... 181.000.00----------1.00--------------------------------------------------------------------
...............................................................................................CACCCCGCCTCCTCCTCGCT.......................................................................................... 201.000.00---------------------------------------------1.00---------------------------------
..........................................................................GGGGCGGGTCGCGCC.................................................................................................................... 1541.001.00------------------------0.25-----------------------------0.50----0.25-------------------
..........................................................................GGCGCGACCCGCCCCGTCG................................................................................................................ 191.000.00----------1.00--------------------------------------------------------------------
..........................................................................GGCGCGACCCGCCCCGTTG................................................................................................................ 191.000.00-----------------------------------1.00-------------------------------------------
............................................................................................................................CTTCGCTCCTCCTCTTTAA.............................................................. 191.000.00------------------------------1.00------------------------------------------------
........................................................................GGGGCGCGACCCGCCCGGG.................................................................................................................. 191.000.00-----------------1.00-------------------------------------------------------------
.........................................................................GGGCGGGTCGCGCCC..................................................................................................................... 1530.330.33--------------------------------------------------------------0.33----------------
................................................................................................................................TCTGAAAGGGAGTGACAAGAGGAGGAGC................................................. 2840.250.25-----------------------------------------------------0.25-------------------------
...................................................................................................................................TCTGAAAGGGAGTGACAAGAGGAGG................................................. 2540.250.25-----------------------------------------------------0.25-------------------------
..........................................................................................................................................................TAGGGACGGGCCGCACTGCGCATGTC......................... 2640.250.25-----------------------------------------------------0.25-------------------------
...............................................................................................................................................................CGGGCCGCACTGCGC............................... 1550.200.20------------------------------------------------------------------------------0.20