ID: uc002eao.2_intron_1_0_chr16_31075803_r.5p
GENE: (1)
chr16:31084780-31085029-


(4)
AGO2.ip 		(1)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(18)
CELL-LINE 		(4)
CERVIX 		(2)
HEART 		(1)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(19)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGTGCGAGGAGCCGACGCCGACGCCACGGAGTCAGCACAAGTCTCATCAGGTAGGAAACGTCGGCGGGAAGCCGCGAGGGCCCCGGGCAGCTCCCACGCGGCCACGATCCGAGCTGGCCTCAGTTTCCCTGCGGGCGCCGAGGGCGGGCCGGGTTGGCCCAGCGCGAGCAGCGCGGGCGGGGCGGGCTGTGAGCGGCCCCGGGCGCATTGCGGGCCCAGCAGGTCCTAGAACCCGCCGGCTGTCTCCGCG
..................................................................((...((....)).))..((((.((((....((((((.(((((((.(((.(((((.((.(((....))).)).))).)).))))))))))((((.((((.....))))))))......)))))))))).))))...................................................
..................................................................67...................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577743(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		TAX577579(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532884(GSM532884)
G871T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................CCGCGAGGGCCCCGGGGC.................................................................................................................................................................18110.002.00--1.00---1.00----------------------1.00--1.00-------1.00-1.00---------1.00--1.00-1.001.00-------
.......................................................................CCGCGAGGGCCCCGGGG..................................................................................................................................................................1715.002.00--1.00----------1.00------1.00----------1.00----------------------1.00-----------
...............................................................................................................................................................................GGCGGGGCGGGCTGTCC..........................................................174.000.00---------------------------------1.00----1.00-------1.00------1.00------------
.......................................................................CCGCGAGGGCCCCGGGGCG................................................................................................................................................................1914.002.00-2.00-1.00----------1.00---------------------------------------------------
..................................................................................................................................................................................GGGGCGGGCTGTGAGCGGATT...................................................213.000.00----3.00-------------------------------------------------------------
........................................................................CGCGAGGGCCCCGGGG..................................................................................................................................................................1622.501.50------1.00-------------------------------------------1.00--------0.50------
.......................................................................CCGCGAGGGCCCCGGG...................................................................................................................................................................1612.002.00-1.00-----------1.00----------------------------------------------------
....CGAGGAGCCGACGCCGAC....................................................................................................................................................................................................................................1812.002.00----------2.00-------------------------------------------------------
.......................................................................CCGCGAGGGCCCCGGGT..................................................................................................................................................................1712.002.00-1.00------1.00---------------------------------------------------------
.......................................................................CCGCGAGGGCCCCGGGGCGG...............................................................................................................................................................2012.002.00---------1.00----1.00---------------------------------------------------
............................................................................................................................................................................................................................AGGTCCTAGAACCCGCCGGC..........2012.002.002.00-----------------------------------------------------------------
........................................................................................................................................................................................................................CAGCAGGTCCTAGAACCCGC..............2012.002.002.00-----------------------------------------------------------------
..........................................CTCATCAGGTAGGAAACGT.............................................................................................................................................................................................1912.002.00------------2.00-----------------------------------------------------
.............................................................................................................................................................................CGGGCGGGGCGGGCTGGGA..........................................................192.000.002.00-----------------------------------------------------------------
........................................................................CGCGAGGGCCCCGGG...................................................................................................................................................................1521.501.50---1.00-----------0.50--------------------------------------------------
........................................................................CGCGAGGGCCCCGGGGCGG...............................................................................................................................................................1921.501.50-0.50-------0.50-----------------------------------------------------0.50--
........................................................................CGCGAGGGCCCCGGGGC.................................................................................................................................................................1721.501.50--------0.50-------0.50--------------------------------------------0.50----
.........................................................................................................................................................................AGCGCGGGCGGGGCGGT................................................................171.000.00----------------------------1.00-------------------------------------
....................................................................................................................................................................................................................................GAACCCGCCGGCTGTCGTTG..201.000.00---------------------1.00--------------------------------------------
.......................CCACGGAGTCAGCACAAGTCT..............................................................................................................................................................................................................2111.001.00-----------------------------------------------1.00------------------
..................................................................................................................................................................................................................................TAGAACCCGCCGGCTGTCTCCGCGGCC271.000.00-----1.00------------------------------------------------------------
..........................................CTCATCAGGTAGGAAACGTCGGCGG.......................................................................................................................................................................................2511.001.00--1.00---------------------------------------------------------------
...........................................TCATCAGGTAGGAAACGTCGGCGGG......................................................................................................................................................................................2511.001.00--1.00---------------------------------------------------------------
.......................................AGTCTCATCAGGTAGGA..................................................................................................................................................................................................1711.001.00-------1.00----------------------------------------------------------
............................................CATCAGGTAGGAAACGTCGGCG........................................................................................................................................................................................2211.001.00-------------------------------------------------1.00----------------
...............................................................................................................................................................................GGCGGGGCGGGCTGTTC..........................................................171.000.00----------------------------------1.00-------------------------------
......................................................................................................................................................................................................................................ACCCGCCGGCTGTCTCCGC.1911.001.00---------------------------1.00--------------------------------------
................................................................................................................................................................................................................TGCGGGCCCAGCAGGGT.........................171.000.00-----1.00------------------------------------------------------------
......................................AAGTCTCATCAGGTAGGAAACGT.............................................................................................................................................................................................2311.001.00-------------------------------------------1.00----------------------
.......................................................................CCGCGAGGGCCCCGGGC..................................................................................................................................................................1711.001.00---1.00--------------------------------------------------------------
...................................................................................................................................................GCCGGGTTGGCCCAGCGGT....................................................................................191.000.00--------------------------------------------1.00---------------------
......................................................GAAACGTCGGCGGGAAG...................................................................................................................................................................................1711.001.00-------------------------1.00----------------------------------------
....CGAGGAGCCGACGCCGACGC..................................................................................................................................................................................................................................2011.001.00--------------------------------------------------------1.00---------
..TGCGAGGAGCCGACG.........................................................................................................................................................................................................................................1511.001.00------------------------------------1.00-----------------------------
.........................................................ACGTCGGCGGGAAGCCTGGG.............................................................................................................................................................................201.000.00-----------------------------------1.00------------------------------
...................................................................................................................................................GCCGGGTTGGCCCAGCGGTC...................................................................................201.000.00--------1.00---------------------------------------------------------
.........................................................................GCGAGGGCCCCGGGCCGG...............................................................................................................................................................181.000.00---------------1.00--------------------------------------------------
..........................................CTCATCAGGTAGGAAACG..............................................................................................................................................................................................1811.001.00-----------------------------------------1.00------------------------
...............................................................................................................................................................................GGCGGGGCGGGCTGTCGGG........................................................191.000.00----------------1.00-------------------------------------------------
.......................................................................CCGCGAGGGCCCCGGGGCTG...............................................................................................................................................................2011.002.00---------1.00--------------------------------------------------------
.............................................................................................................................................................................CGGGCGGGGCGGGCTAGGG..........................................................191.000.00-----------------1.00------------------------------------------------
..........................CGGAGTCAGCACAAGTCT..............................................................................................................................................................................................................1811.001.00---------------------------------------1.00--------------------------
................................................................................CCCCGGGCAGCTCCCACGCG......................................................................................................................................................2011.001.00---------------------------------------------1.00--------------------
.......................................................AAACGTCGGCGGGAAGC..................................................................................................................................................................................1711.001.00-------1.00----------------------------------------------------------
......AGGAGCCGACGCCGACGCC.................................................................................................................................................................................................................................1911.001.00------------------------------------------------1.00-----------------
..............................................................................................................................................................................GGGCGGGGCGGGCTG.............................................................1501.001.00------1.00-----------------------------------------------------------
..................................................GTAGGAAACGTCGGCGGGAAGCCGCGA.............................................................................................................................................................................2711.001.00-----------------------1.00------------------------------------------
........................................GTCTCATCAGGTAGGAAACGTCGGC.........................................................................................................................................................................................2511.001.00-------------------------------------1.00----------------------------
.............................................................................................................CGAGCTGGCCTCAGTTTCCCTGCGGGCGCCGAG............................................................................................................3311.001.00-------------------1.00----------------------------------------------
.......................................................................CCGCGAGGGCCCCGG....................................................................................................................................................................1530.670.67----------------------------------------------------------------0.330.33
....................................................................................................................................................................................GGCGGGCTGTGAGCGG......................................................1620.500.50------------------------------------------------------------0.50-----
.....................................................................................................CCACGATCCGAGCTG......................................................................................................................................1520.500.50-------0.50----------------------------------------------------------
.................................................................................................................................................................................CGGGGCGGGCTGTGA..........................................................1530.330.33-----------------0.33------------------------------------------------
..............................................................................................................................................................................GGGCGGGGCGGGCTGT............................................................1690.110.11---------------0.11--------------------------------------------------
..............................................................................................................................................................................GGGCGGGGCGGGCTGTAGGG........................................................2090.110.11------------------0.11-----------------------------------------------

Antisense strand
GGTGCGAGGAGCCGACGCCGACGCCACGGAGTCAGCACAAGTCTCATCAGGTAGGAAACGTCGGCGGGAAGCCGCGAGGGCCCCGGGCAGCTCCCACGCGGCCACGATCCGAGCTGGCCTCAGTTTCCCTGCGGGCGCCGAGGGCGGGCCGGGTTGGCCCAGCGCGAGCAGCGCGGGCGGGGCGGGCTGTGAGCGGCCCCGGGCGCATTGCGGGCCCAGCAGGTCCTAGAACCCGCCGGCTGTCTCCGCG
..................................................................((...((....)).))..((((.((((....((((((.(((((((.(((.(((((.((.(((....))).)).))).)).))))))))))((((.((((.....))))))))......)))))))))).))))...................................................
..................................................................67...................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577743(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		TAX577579(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532884(GSM532884)
G871T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...TGACTCCGTGGCGTCGGCGTCGGCTCCTCGC........................................................................................................................................................................................................................ 3112.002.00-----------2.00------------------------------------------------------
................................................................................................................GCTGGCCTCAGTTTCCCTCCGG.................................................................................................................... 221.000.00-----1.00------------------------------------------------------------
......................................................................................................................................................................................................................................ACCCGCCGGCTGTCTGGAC. 191.000.00----------------------1.00-------------------------------------------
......................................................................GCCGCGAGGGCCCCGGCC.................................................................................................................................................................. 181.000.00------------------------1.00-----------------------------------------
.................ACTCCGTGGCGTCGG.......................................................................................................................................................................................................................... 1511.001.00--------------------------1.00---------------------------------------
......................................................................................................................................................................................................................................GGAGACAGCCGGCGGGT... 1711.001.00---------------------------------------------------1.00--------------
.....................................................GGAAACGTCGGCGGGAGTC.................................................................................................................................................................................. 191.000.00------------------1.00-----------------------------------------------
..........GTGGCGTCGGCGTCGGC............................................................................................................................................................................................................................... 1711.001.00------------------------------1.00-----------------------------------
..............................................................................................................................................................................................................................GGCGGGTTCTAGGAC............. 1520.500.50--------------------------------------------------------------0.50---
.....................................................................................................................................GGCCCGCCCTCGGCGCC.................................................................................................... 1730.330.33-------0.33----------------------------------------------------------