ID: uc002dyi.3_intron_28_0_chr16_30530041_f.3p
GENE: (29)
chr16:30530978-30531227+


(1)
AGO1.ip 		(2)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(20)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(7)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
AGGGCTGCCTAAGGTGTGTGTTGGCCAACTCATGGCAGCGACTGCAATAGGTGACGTGTTAAAGGGAGAGGGTCTGCAGCTGGAGACTCCAGGCGGGTGATGCAGTCCGGATAGGAGGAGATGGGGAATGGAACCAGGTTCACAGGGACTTTCAGGGGTGGAAAAGGCATTTTCCGGCACTCCCCTCCCCCTGCTCCCAGGTTGTCATGAAGGTTGACGTGGTGTATGAGAAGCAGATGCTCTACCTCTA
.........................................................................................................((((....(((((...(((((..((....))..))).))....))))).....))))........................................................................................
.......................................................................................................104...........................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................AGGGACTTTCAGGGGCAGA........................................................................................1917.000.00-2.005.00--1.00-1.00---1.00-------------1.00----1.00--1.00-----1.001.00--1.001.00-
...............................................................................................................................................AGGGACTTTCAGGGGCAGT........................................................................................1912.000.00-1.00-4.003.00------1.00--------------------1.00-1.00---1.00-------
...............................................................................................................................................AGGGACTTTCAGGGGCAAA........................................................................................198.000.001.001.00--1.00--2.001.00------2.00------------------------------
...............................................................................................................................................AGGGACTTTCAGGGGCAA.........................................................................................187.000.00-2.00------2.00----2.00--------1.00-----------------------
...............................................................................................................................................AGGGACTTTCAGGGGTAGCT.......................................................................................204.000.00-----2.001.00---1.00-----------------------------------
..................................................................................................................................................................................................................AGGTTGACGTGGTGTATGAGAAG.................2313.003.003.00---------------------------------------------
...............................................................................................................................................AGGGACTTTCAGGGGCAAT........................................................................................193.000.00------------------1.001.00-----------------1.00--------
...............................................................................................................................................AGGGACTTTCAGGGGCCGC........................................................................................192.000.00----------1.00-----1.00-----------------------------
...............................................................................................................................................AGGGACTTTCAGGGGCATC........................................................................................192.000.00----1.00-------1.00---------------------------------
...............................................................................................................................................AGGGACTTTCAGGGGCAGG........................................................................................192.000.001.001.00--------------------------------------------
...............................................................................................................................................AGGGACTTTCAGGGGTAGC........................................................................................192.000.001.00-----1.00---------------------------------------
...............................................................................................................................................AGGGACTTTCAGGGGCAT.........................................................................................182.000.00---1.00-1.00----------------------------------------
...............................................................................................................................................AGGGACTTTCAGGGGGAGT........................................................................................192.000.00------1.00-------1.00-------------------------------
..............................................................................................................................................................................................................ATGAAGGTTGACGTGGTGT.........................1912.002.00-----------------2.00----------------------------
...............................................................................................................................................AGGGACTTTCAGGGGGAGC........................................................................................192.000.001.00-------------1.00-------------------------------
...............................................................................................................................................AGGGACTTTCAGGGGCAAG........................................................................................191.000.001.00---------------------------------------------
............................................................................................................GGATAGGAGGAGATGGGGAATGGAA.....................................................................................................................2511.001.00---------1.00------------------------------------
...................................................................................................................AGGAGATGGGGAATGGAACCA..................................................................................................................2111.001.00---------1.00------------------------------------
...............................................................................................................................................................................................................TGAAGGTTGACGTGGTGTA........................1911.001.00--------------------1.00-------------------------
.......................................................................................................................................................................................................................GACGTGGTGTATGAGAAGCAGATG...........2411.001.00----------------------------1.00-----------------
...............................................................................................................................................AGGGACTTTCAGGGGAAGA........................................................................................191.000.00------------1.00---------------------------------
.....................................GCGACTGCAATAGGTGACGTG................................................................................................................................................................................................2111.001.00-----------------------------1.00----------------
.............................................................................................................................................................................................................CATGAAGGTTGACGTGGTGTATGA.....................2411.001.00-----------------------------------1.00----------
.................................................................................................................................................................................CACTCCCCTCCCCCTGATC......................................................191.000.00------------------------------------------1.00---
...............................................................GGGAGAGGGTCTGCAGAT.........................................................................................................................................................................181.000.00-----------------------------------------1.00----
.......................................................................................................................................................................................................GGTTGTCATGAAGGTTGACGTGGT...........................2411.001.00------------------------1.00---------------------
...............................................................................................................................................AGGGACTTTCAGGGGTACC........................................................................................191.000.00------1.00---------------------------------------
...................................................................................................................................................ACTTTCAGGGGTGGAGGA.....................................................................................181.000.00--------------------------1.00-------------------
..............................................................................................................................................................................................................ATGAAGGTTGACGTGGTGTATGAGAAGCA...............2911.001.00---------1.00------------------------------------
...............................................................................................................................................AGGGACTTTCAGGGGTGGCTGT.....................................................................................221.000.00----------------1.00-----------------------------
........................................................................................................................................................CAGGGGTGGAAAAGGC..................................................................................1650.200.20---------------------------------------------0.20

Antisense strand
AGGGCTGCCTAAGGTGTGTGTTGGCCAACTCATGGCAGCGACTGCAATAGGTGACGTGTTAAAGGGAGAGGGTCTGCAGCTGGAGACTCCAGGCGGGTGATGCAGTCCGGATAGGAGGAGATGGGGAATGGAACCAGGTTCACAGGGACTTTCAGGGGTGGAAAAGGCATTTTCCGGCACTCCCCTCCCCCTGCTCCCAGGTTGTCATGAAGGTTGACGTGGTGTATGAGAAGCAGATGCTCTACCTCTA
.........................................................................................................((((....(((((...(((((..((....))..))).))....))))).....))))........................................................................................
.......................................................................................................104...........................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................AAAGGGAGAGGGTCTGTAA........................................................................................................................................................................... 191.000.00-------------------------------1.00--------------
.................................................GGTGACGTGTTAAAGAGA....................................................................................................................................................................................... 181.000.00---------------------------1.00------------------
......................................................................................................................................................................................................................................AAGCAGATGCTCTACCGG.. 181.000.00---------------------1.00------------------------
................................................................................................................................................................................GCACTCCCCTCCCCCTAATT...................................................... 201.000.00------------------------------------1.00---------
................................................................................................................................................................................GCACTCCCCTCCCCCTAAA....................................................... 191.000.00-----------------------1.00----------------------