ID: uc002dxx.2_intron_2_0_chr16_30390505_r
GENE: (7)
chr16:30390455-30390805-


(2)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(8)
BREAST
(12)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(8)
LIVER
(1)
OTHER
(17)
SKIN
(2)
UTERUS

Sense strand
CGGGAACCGGCCGGTGAGGGGACGCCGCTACTCCTGGGGGACCGTGGAGGGTGAGTGAGGCCAGGCAGGGGTCCTAAGGCCAGCAGGGAGCCCGGGGCCTCTGGGTCAGGCGCACTCAACATGTGAAGTTGGGGTGGGCTTTGGTCCCAGGGGATCCTAGGAGGAAAGGGGGGTCGCTGGGCTGCAGACCGCGGACCCTCCGCTAGAGTGGCAGCAGGACTTTCCTGTAGACCCGACCCTTACGGGTGGGTTGGACCCGAAACTCCCTGACGTTCGCTGGTCCGCGCCGCCCCCCCTCCAGTGGAGAACCCACATCACTGCGATTTCCTGAACCTGCGACGGATGCTGGTG
............................................................(((..((((((((((..(((.........))).))))))))))....((((.((((((((.......)))))).)).)))))))...............................................................................................................................................................................................................
............................................................61..................................................................................145............................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577738(Rovira)
total RNA. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR040041(GSM532926)
G612T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR189783SRR343336SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................CAGGGGTCCTAAGGCGAG............................................................................................................................................................................................................................................................................1822.000.0014.001.00----1.00---2.00-------1.00--1.00---1.001.00----------------------------------
.................................................................CAGGGGTCCTAAGGCG..............................................................................................................................................................................................................................................................................168.000.00-5.00---1.00---------------------------------1.00--1.00------------------
...........................................................................................................................TGAAGTTGGGGTGGGAGA..................................................................................................................................................................................................................188.000.00--5.00--------2.00--------------------------------1.00----------------
.................................................................CAGGGGTCCTAAGGCGAGC...........................................................................................................................................................................................................................................................................195.000.002.00-----1.00-------1.00-------------1.00--------------------------------
.................................................................CAGGGGTCCTAAGGCGA.............................................................................................................................................................................................................................................................................173.000.00-1.00---1.00----------------------------1.00--------------------------
................................................................GCAGGGGTCCTAAGGCGAGC...........................................................................................................................................................................................................................................................................2031.330.670.33--------------------------------------------------0.67-------0.33-
............................................................................................................................................................................................................................................................................................CGCCGCCCCCCCTCCGGGC................................................191.000.00---------1.00---------------------------------------------------
................................................................GCAGGGGTCCTAAGGCCAGCCCAG.......................................................................................................................................................................................................................................................................241.000.00-------------------1.00-----------------------------------------
..............................................................AGGCAGGGGTCCTAAAGGG..............................................................................................................................................................................................................................................................................191.000.00-------1.00-----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................CTGCGACGGATGCTGGTGCAGT221.000.00--------------------------------------1.00----------------------
......CCGGCCGGTGAGGGGACGCCGTTA.................................................................................................................................................................................................................................................................................................................................241.000.00----------------------1.00--------------------------------------
...............................TCCTGGGGGACCGTGGATG.............................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------1.00-------------------
................................................................................................................................................................................................................TGGCAGCAGGACTTTA...............................................................................................................................161.000.00-----------------------1.00-------------------------------------
..................................................................AGGGGTCCTAAGGCCAGCTCA........................................................................................................................................................................................................................................................................211.000.00-------1.00-----------------------------------------------------
................................................................................................................................................................................................................................................................................................................AGAACCCACATCACTATAA............................191.000.00-------------1.00-----------------------------------------------
...................................................................GGGGTCCTAAGGCCAGCT..........................................................................................................................................................................................................................................................................181.000.00------------------------------1.00------------------------------
................................................................GCAGGGGTCCTAAGGCCAGCTCA........................................................................................................................................................................................................................................................................231.000.00---------1.00---------------------------------------------------
.............................................................................................................................................................................................................................................................................................GCCGCCCCCCCTCCACGC................................................1830.670.67---------------0.33------------------------------------------0.33--
................................................................GCAGGGGTCCTAAGGC...............................................................................................................................................................................................................................................................................1630.670.67-----------------------------------------------------0.33-0.33-----
.............................................................................................................................................................................................................................................................................................GCCGCCCCCCCTCCACGCG...............................................1930.670.67----------------0.33----------------------------------------0.33---
.............................................................................................................................................................................................................................................................................................GCCGCCCCCCCTCCA...................................................1530.670.67--------------------------------------------------0.33-----0.33----
................................................................GCAGGGGTCCTAAGGCGAG............................................................................................................................................................................................................................................................................1930.670.670.33---0.33--------------------------------------------------------
................................................................GCAGGGGTCCTAAGGCG..............................................................................................................................................................................................................................................................................1730.670.67--0.33-------------------------------------------------0.33--------
................................................................GCAGGGGTCCTAAGGCGA.............................................................................................................................................................................................................................................................................1830.330.67--------------------------------------------------0.33----------
.............................................................................................................................................................................................................................................................................................GCCGCCCCCCCTCCACG.................................................1730.330.67--------------0.33----------------------------------------------
.........................................................................................GCCCGGGGCCTCTGGG......................................................................................................................................................................................................................................................1650.200.20------------------------------------------------------------0.20

Antisense strand
CGGGAACCGGCCGGTGAGGGGACGCCGCTACTCCTGGGGGACCGTGGAGGGTGAGTGAGGCCAGGCAGGGGTCCTAAGGCCAGCAGGGAGCCCGGGGCCTCTGGGTCAGGCGCACTCAACATGTGAAGTTGGGGTGGGCTTTGGTCCCAGGGGATCCTAGGAGGAAAGGGGGGTCGCTGGGCTGCAGACCGCGGACCCTCCGCTAGAGTGGCAGCAGGACTTTCCTGTAGACCCGACCCTTACGGGTGGGTTGGACCCGAAACTCCCTGACGTTCGCTGGTCCGCGCCGCCCCCCCTCCAGTGGAGAACCCACATCACTGCGATTTCCTGAACCTGCGACGGATGCTGGTG
............................................................(((..((((((((((..(((.........))).))))))))))....((((.((((((((.......)))))).)).)))))))...............................................................................................................................................................................................................
............................................................61..................................................................................145............................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577738(Rovira)
total RNA. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR040041(GSM532926)
G612T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR189783SRR343336SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................................................................................................................GTCCGCGCCGCCCCCCTGT..................................................... 195.000.00--------1.00----------------------1.001.00----1.00-----------1.00-----------
.......................................................................................................................................................................................................................................................................................GTCCGCGCCGCCCCCTGT...................................................... 183.000.00---2.00--------------------------------------------1.00------------
............................................................................................................................................................................................CCGCGGACCCTCCGCGCC................................................................................................................................................. 182.000.00---------------------------------1.00-------------1.00-------------
............................................................................................................................................................................................................................................................................................CGCCGCCCCCCCTCCGCGG................................................ 191.000.00-----------------------------------1.00-------------------------
..........................................................................................................................................................................................................................................................................................GAGGGGGGGCGGCGCG..................................................... 1611.001.00----------------------------------------------1.00--------------
.........................................................................................................................................................................................................................................................................................CCGCGCCGCCCCCCCTCGGAG................................................. 211.000.00------------1.00------------------------------------------------
......................................................................................................................................................................................TGCAGACCGCGGACCCTCCAT.................................................................................................................................................... 211.000.00-------------------------------------------1.00-----------------
................................................................................................................................TTGGGGTGGGCTTTGGA.............................................................................................................................................................................................................. 171.000.00-------------1.00-----------------------------------------------
....................................................................................................................................................................................CTAGCGGAGGGTCCGCGGTCTGCAGC................................................................................................................................................. 2611.001.00---1.00---------------------------------------------------------
....................................................................................................................................................................................................................................................................................CTGGTCCGCGCCGCCCCCGG....................................................... 201.000.00---------------------------1.00---------------------------------
......................................................................................................................................................................................................................................................................................GGTCCGCGCCGCCCCGT........................................................ 171.000.00----1.00--------------------------------------------------------
..................................................................................................................................GGGGTGGGCTTTGGTTTC........................................................................................................................................................................................................... 181.000.00------------------------------------1.00------------------------
........................................................................................................................................................................................................................................................................................TCCGCGCCGCCCCCCCACC.................................................... 191.000.00--------------------1.00----------------------------------------
.......................................................................................................................................................................................................................................................................................GTCCGCGCCGCCCCCCGT...................................................... 181.000.00----------------1.00--------------------------------------------
.......................................................................................................................................................................................GCAGACCGCGGACCCTCCC..................................................................................................................................................... 191.000.00-----------------------------1.00-------------------------------
.......................................................................................................................................................................................................................................................................................GTCCGCGCCGCCCCCCCT...................................................... 181.000.00------------------------1.00------------------------------------
......................................................................................................................................................................................................................................................................................GGTCCGCGCCGCCCCCGTA...................................................... 191.000.00------------1.00------------------------------------------------
...............................................................................................GGCCTCTGGGTCAGGCGGCGG........................................................................................................................................................................................................................................... 211.000.00----------------------------------------1.00--------------------
........................................................................................................................................................................................................................................................................................TCCGCGCCGCCCCCCATG..................................................... 181.000.00--------1.00----------------------------------------------------
.......................................................................................................................................................................................................................................................................................GTCCGCGCCGCCCCCCTG...................................................... 181.000.00----1.00--------------------------------------------------------
.......................................................................................................................................................................................................................................................................................GTCCGCGCCGCCCCCCTCT..................................................... 191.000.00---------------1.00---------------------------------------------
.........................................................................................................................................................................................................................................................................................CCGCGCCGCCCCCCCCGA.................................................... 181.000.00---------------------------------------------1.00---------------
............................................................................................................................................................................................CCGCGGACCCTCCGCGC.................................................................................................................................................. 171.000.00-----------------1.00-------------------------------------------
....................................................................................................................................................................................TCCGCGGTCTGCAGC............................................................................................................................................................ 1520.500.50--------------0.50----------------------------------------------
.............................................................................................................................................................................................................................................................................................TGGAGGGGGGGCGGC................................................... 1530.330.33------------------------------------------------------0.33------