ID: uc002dxd.2_intron_7_0_chr16_30214138_f
GENE: (8)
chr16:30214088-30214282+


(1)
AGO1.ip
(2)
AGO2.ip
(17)
B-CELL
(5)
BRAIN
(29)
BREAST
(47)
CELL-LINE
(7)
CERVIX
(5)
FIBROBLAST
(6)
HEART
(7)
HELA
(1)
KIDNEY
(10)
LIVER
(4)
OTHER
(1)
RRP40.ip
(61)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
TGAGCCTGGGACCTGGGACAGCTTCCTGGAAAAGTTCATGGCTGGAGAAGGTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTGCCCCCTGCCCGCTTCTCTAGTGTCCTACGGGTCCTGGTACCAGCACGTGCAGGAGTGGTGGGAGCTGAGC
............................................................((((((((.((((((.((...((((((((((.((.((......))...)).)))))...))))))).))))..))..))))))))..................................................
.........................................................58.....................................................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577742(Rovira)
total RNA. (breast)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
TAX577739(Rovira)
total RNA. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577744(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577580(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577741(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577745(Rovira)
total RNA. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
TAX577590(Rovira)
total RNA. (breast)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029126(GSM416755)
143B. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM532890(GSM532890)
G576T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM532883(GSM532883)
G871N. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)
GSM532886(GSM532886)
G850T. (cervix)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.................................GTTCATGGCTGGAGAAG.................................................................................................................................................174228.50228.5037.5019.5013.50-7.75--0.7510.508.256.255.75-6.505.000.25--0.504.504.004.00--2.501.754.254.003.250.252.252.503.50--3.500.50-0.25-1.252.751.752.502.25-3.00---2.502.50-2.50-2.252.001.002.500.752.250.251.25-1.502.00-------1.75-0.750.751.251.500.25--1.250.25-0.500.50-0.250.500.50--------0.250.250.750.251.250.500.75--0.500.75-0.50--------------1.000.500.250.250.250.750.250.250.25---0.50-0.250.250.25---0.50-----0.500.500.50----0.50----0.50--0.25---------------0.250.250.250.250.250.250.250.250.25--0.250.250.250.250.250.250.25-0.250.250.25--
................................AGTTCATGGCTGGAGAAG.................................................................................................................................................18337.6737.670.673.331.67-2.67-0.33--1.000.670.67--1.000.33-2.33-0.330.670.33--0.330.33--0.67-0.330.330.33-------1.330.330.330.33------0.33-0.67----0.67-0.33----0.33-0.330.67------0.330.67---0.331.670.330.330.33---------0.670.330.331.33-0.33----------0.33-------------1.00---0.33------0.330.670.67---0.330.33--------------------------0.330.33--0.33-0.33-0.330.33--0.33-0.33------------------------
.......................TCCTGGAAAAGTTCATGGCTGGAGAAG.................................................................................................................................................27231.5031.50-1.50-5.001.004.50--0.501.000.501.00-----1.500.50-----1.500.50----0.50-----0.50---------------------------------------0.50--1.00-0.50---0.50-1.50-0.50--------------0.500.50--0.50----0.50------1.00----0.50--0.500.50-----------------0.50--0.50---------0.50-0.50--0.50-----------------------------------------
......................TTCCTGGAAAAGTTCATGGCTGGAGAAG.................................................................................................................................................28225.0025.00-1.000.500.501.002.50--1.001.502.00--0.500.50--1.00-------1.00-----0.50----1.50-------0.50----------------1.000.50----0.50------1.50-0.500.50---0.50---------0.50--------0.50----------0.50-0.50-----------0.50----0.50--0.50-----0.50-----------------0.50-------------------------------------------------
.....................CTTCCTGGAAAAGTTCATGGCTGGAGAAG.................................................................................................................................................29213.5013.50---5.50-4.50-------------------------0.50----------0.50------------------0.50-----0.50-----------------0.50---------------0.50------------------------------0.50--------------------------------------------------------------------------
..................................TTCATGGCTGGAGAAG.................................................................................................................................................16812.5012.50-1.120.50-----0.25-0.750.12-0.250.38----0.120.250.25--0.250.500.250.500.50-0.250.250.25--0.380.12----0.12-0.120.12-----0.120.38-0.25-0.380.25---0.120.120.12-0.120.25-------0.12-0.38--0.250.12---------0.50-0.12------------0.25---0.12------------------0.120.12-----0.12---0.120.12---------------------------0.12--------------------------------------0.12
........................CCTGGAAAAGTTCATGGCTGGAGAAG.................................................................................................................................................26210.5010.50---6.00-3.00-------------------------------------------------------0.50--------------------------------------------------------------------------------------0.50------0.50---------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTGGT................................................................................................................219.000.00------1.00--------1.00--1.00----------1.00---3.00---------------1.00------------------1.00------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTATAG.................................................................................................................209.000.00------1.00-----3.00---1.00------1.00---------1.00---------------1.00------------------------------------------------------------1.00------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTAGT................................................................................................................218.000.00------4.00--------1.00------1.00---------------1.00---------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAGGTT...............................................................................................................227.000.00------1.00---------------1.00------------------------1.00---------------------2.00---------------------------------------------------1.00--1.00----------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAGTT...............................................................................................................2226.000.50----------------2.00-1.00----1.00-----------------------1.00------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTGCCCCCTGCCCGCTTCTCTA...................................................9425.005.00-------5.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAGGT................................................................................................................215.000.00---------------1.001.00-1.00----1.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................GAGGAAGGAGGGTGTATAG.................................................................................................................195.000.00-1.00----------2.00---------------------1.00-------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTGCCCCCTGCCCGCTTCTCTAG..................................................9523.503.50-------3.50-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................AAGTTCATGGCTGGAGAAG.................................................................................................................................................1933.333.33--------------------0.33-------------------0.67-0.33-------------0.33-------0.33----------------------------------------------------1.00------------------------0.33----------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTGCCC...................................................................7823.003.00-------3.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAGGCT...............................................................................................................223.000.00---------------1.00------------------------------------------------------1.00-------------------------------1.00--------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTAG.................................................................................................................203.000.00----------------1.00---------------------1.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGA.............................................................................................................3622.502.50------------------------------------------------------------------------------------1.50-----------------------------------------------------------0.50------------------0.50-------------------------------------------
..............................................................GGAGGAAGGAGGGTGTATA..................................................................................................................192.000.00------1.00---------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................TGGCTGGAGAAGGTGGTTGA.........................................................................................................................................202.000.00------------------------------------------------------2.00--------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTGGA................................................................................................................212.000.00---------------1.00-------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................TCCTGGAAAAGTTCATGGCT........................................................................................................................................................2022.002.00----------------------------------------------------------------------------------------------------------------0.50-----0.50--------------------------0.50----------0.50--------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTA......................................................................752.000.00-------2.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAT..........................................................................................................................2322.000.50------------------------------------------------------------------1.00---------------------1.00----------------------------------------------------------------------------------------------------------------------
......................TTCCTGGAAAAGTTCATGGCTGGAGA...................................................................................................................................................2621.501.50-----------------1.50---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................TTGACTGGAGGAAGGAGGGTG......................................................................................................................2121.501.50--------------------------------------------------------------------------------------------------------------------0.50--------------------------0.50----------------------0.50----------------------------------------
.................................GTTCATGGCTGGAGAA..................................................................................................................................................1651.201.20-0.200.20------0.20----------0.20---0.20------------------0.20-------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTATC..................................................................................................................191.000.00----------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................CCCCTGCCCGCTTCTCTAG..................................................1921.001.00----------------------------------------------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGGTT.................................................................................................................201.000.00-----------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTA..................................................................................................................191.000.00----------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGG............................................................................................................................2121.001.00---------------------------------------0.50-----------------0.50-----------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAGCG...............................................................................................................221.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAGTAA..............................................................................................................2321.000.50-----------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................CTGGAGAAGGTGGGCGGT........................................................................................................................................181.000.00------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAGTTA..............................................................................................................2321.000.50-----------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAGATC..............................................................................................................................................2041.00228.50--------------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAGGAA..............................................................................................................................................201.000.00-----------------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------
.......................TCCTGGAAAAGTTCATGGCTGGAGAAA.................................................................................................................................................2721.000.50------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAGCTT..............................................................................................................231.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................TCATGGCTGGAGAAG.................................................................................................................................................1501.001.00-----------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................TTCCTGGAAAAGTTCATGGCTGGAGGAA.................................................................................................................................................2821.000.50----1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTATGG.................................................................................................................201.000.00------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTTTGG.................................................................................................................201.000.00---------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGGAT.................................................................................................................201.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTGCCCCCTGC..............................................................8321.001.00-----------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
...............................................................GAGGAAGGAGGGTGTGGGGT................................................................................................................201.000.00----------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTAA.................................................................................................................201.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................TCCTGGAAAAGTTCATGGCTGGAGAAGAA...............................................................................................................................................2921.0031.50--------------------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTGGG................................................................................................................211.000.00-----------------------------------------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------------------
..........................................................................................................................................TCTCTAGTGTCCTACTATC......................................191.000.00---------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
......................TTCCTGGAAAAGTTCATGGCTGGAGCAC.................................................................................................................................................2821.000.50----1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................GCTTCCTGGAAAAGTTCATGGCTGGAGAAG.................................................................................................................................................3021.001.00--0.50-----------------------------------------------------------0.50------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAGGC................................................................................................................211.000.00--------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAGTCT...............................................................................................................221.000.00----------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAGGTGGG............................................................................................................................................2231.001.00----------------------------------------------------0.67-------------0.33--------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTCG.................................................................................................................201.000.00------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................AGCACGTGCAGGAGTGTT...........181.000.00-------------------------------------------------------------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
...............................................................GAGGAAGGAGGGTGTACCG.................................................................................................................191.000.00------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAAAA...............................................................................................................221.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGCGT...................................................................................................................181.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTAT...................................................................................................................181.000.00--------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------------
........................CCTGGAAAAGTTCATGGCTGGAGAAGTGT..............................................................................................................................................2921.0010.50-----------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAGGGTG.............................................................................................................................................211.000.00------------------------------------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------
...............................................................GAGGAAGGAGGGTGTATAA.................................................................................................................191.000.00----------------------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................AGCACGTGCAGGAGTGGTG..........1931.001.00---------------------------------------0.33-----------------------0.67-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAG..........................................................................................................................2321.001.00------------------------------------------------------------------0.50------------------------------------------------------------------------------------0.50-------------------------------------------------------
...........................................................................................................................................................................GTGCAGGAGTGGTGGGCGAT....201.000.00-------------------------------------------------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TCTCTAGTGTCCTACGGTC......................................191.000.00------------------------------------------------------------------------------------------------------------------1.00--------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTCTAG.................................................................................................................201.000.00------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAGGTGGT............................................................................................................................................2231.000.67---------------------------------------------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------
.........................CTGGAAAAGTTCATGGCTGGAGAAG.................................................................................................................................................2521.001.00----------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................GAGGAAGGAGGGTGTGAGGGT...............................................................................................................211.000.00----------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTGCCCCCTGC..............................................................8221.001.00-----------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAGCA...............................................................................................................221.000.00----------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTGAA................................................................................................................211.000.00-------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTTG.................................................................................................................201.000.00----------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................GAGGAAGGAGGGTGTATA..................................................................................................................181.000.00------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................GAGGAAGGAGGGTGTAAAG.................................................................................................................191.000.00---------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
........................................GCTGGAGAAGGTGGGCGG.........................................................................................................................................181.000.00-------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................AGCACGTGCAGGAGTGGTGA.........2031.001.00---------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAGA................................................................................................................................................1841.00228.500.25------------------0.25----------------------0.25--------------------------------------------------------------------------------------------------------------------------------------------------------------0.25-----
.......................TCCTGGAAAAGTTCATGGCTGGAG....................................................................................................................................................2421.001.00----1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGTAGC................................................................................................................211.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAGTA...............................................................................................................2221.000.50------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................TTCATGGCTGGAGAAGGTGGGC...........................................................................................................................................2230.670.67--------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.33--------0.33---------------------------
......TGGGACCTGGGACAGCTTCC.........................................................................................................................................................................2030.670.67---------------------------------------0.33-----------------------------------------------------------------------------------------------------------------------------------0.33-----------------------------------
.GAGCCTGGGACCTGGGACAGCT............................................................................................................................................................................2230.670.67---------------------------------------0.33---------------------------------------------------------------------------------------------------------------------------------------------0.33-------------------------
.....CTGGGACCTGGGACAGCTTC..........................................................................................................................................................................2030.670.67---------------------------------------------------------------0.33-------------------------------------------------------------------------0.33---------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAGGTGG.............................................................................................................................................2130.670.67---------------------------------------------------------------------------------0.33-------------------------------------------------------------------------------------------0.33---------------------------------
.........................................................TGACTGGAGGAAGGAGGGTG......................................................................................................................2020.500.50----------------------------------------------------0.50----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGA...........................................................................................................................2220.500.50----------------------------------------------------------------------------------------------------------------0.50----------------------------------------------------------------------------------------------
.........................................CTGGAGAAGGTGGGCTTGACTGGAG.................................................................................................................................2520.500.50----0.50----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAGGG........................................................................................................................2520.500.50----0.50----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......GGGACCTGGGACAGCTTCCTGGAA....................................................................................................................................................................2420.500.50-----------------------------------------------------------------------------------------------------------0.50---------------------------------------------------------------------------------------------------
................................AGTTCATGGCTGGAGAAGGTGGGCTTGAC......................................................................................................................................2920.500.50---------------0.50-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................CTGGAGAAGGTGGGCTTGACT.....................................................................................................................................2120.500.50----------------------------------------------------------------------------------------------------------0.50----------------------------------------------------------------------------------------------------
.......................TCCTGGAAAAGTTCATGGCTGGAGA...................................................................................................................................................2520.500.50-----------------0.50---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................TCCTGGAAAAGTTCATGGCTGGAGAA..................................................................................................................................................2620.500.50-------------------------------------------------------------------0.50-------------------------------------------------------------------------------------------------------------------------------------------
.....................CTTCCTGGAAAAGTTCATGG..........................................................................................................................................................2020.500.50--------------------------------------------------------------------------------------------------------------------------------------------------------------0.50------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTGCCCCCTGCCCGC..........................................................8720.500.50-----------------------------------------------------------------------------------------------------------------------------------------------------0.50---------------------------------------------------------
.............................................................TGGAGGAAGGAGGGTGTGAAGC................................................................................................................2220.500.50-----------------------------------------------------------------------------------------------------------------------------------------------------------------0.50---------------------------------------------
......................TTCCTGGAAAAGTTCATGGCT........................................................................................................................................................2120.500.50-----------------------------------------------------------------------------------0.50---------------------------------------------------------------------------------------------------------------------------
......................TTCCTGGAAAAGTTCATGGCTGGAG....................................................................................................................................................2520.500.50--0.50------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................GAAAAGTTCATGGCTGGAGAAG.................................................................................................................................................2220.500.50-------------------------0.50-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
........................CCTGGAAAAGTTCATGGCT........................................................................................................................................................1920.500.50-----------------------------------------------------------------------------------0.50---------------------------------------------------------------------------------------------------------------------------
..............................................................GGAGGAAGGAGGGTGTGAAG.................................................................................................................2020.500.50--------------------------------------------------------------------------------------------------------------------0.50------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGAAG.............................................................................................................................2020.500.50----0.50----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................TCCTGGAAAAGTTCATGGC.........................................................................................................................................................1920.500.50----------------------------------------------------------------------------------------------------------------------0.50----------------------------------------------------------------------------------------
.............................AAAAGTTCATGGCTGGAGAAG.................................................................................................................................................2120.500.50--------------0.50------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..........................TGGAAAAGTTCATGGCTGGAG....................................................................................................................................................2120.500.50-------------------------------------------------------------------------------------------0.50-------------------------------------------------------------------------------------------------------------------
..................................TTCATGGCTGGAGAAGATC..............................................................................................................................................1980.3812.50--------------------------------------------------------------------------------------------0.38------------------------------------------------------------------------------------------------------------------
.......................TCCTGGAAAAGTTCATG...........................................................................................................................................................1730.330.33----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.33----------------------------
.......................................................................................................................TCGGTGCCCCCTGCCCG...........................................................1730.330.33------------------------------0.33--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.GAGCCTGGGACCTGGGACAGCTTC..........................................................................................................................................................................2430.330.33----------------------------------------------------------------------------------------------------------0.33----------------------------------------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAGGTGGGCTT.........................................................................................................................................2530.330.33-----------------------------------------------------------------------------------------------------------0.33---------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGTACCAGCACGTGCAGGA................2030.330.33-------------------------------------------------------------------------------------------0.33-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................CCCCCTGCCCGCTTCT......................................................1630.330.33-----------------------------------------------------------0.33---------------------------------------------------------------------------------------------------------------------------------------------------
.....................................ATGGCTGGAGAAGGTGGGCT..........................................................................................................................................2030.330.33-------------------0.33-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................TGCAGGAGTGGTGGGAGCTGA..2130.330.33---------------------------------------------------------0.33-----------------------------------------------------------------------------------------------------------------------------------------------------
....CCTGGGACCTGGGACAGCTT...........................................................................................................................................................................2030.330.33-----------------------------------------------------------------------------------------------------------------------------------------0.33---------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGGA...............................................................................................................................1830.330.33--0.33------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......TGGGACCTGGGACAGCTTCCT........................................................................................................................................................................2130.330.33---------------------------------------------------------------------------------------------0.33-----------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTTGACTGGAGG................................................................................................................................1730.330.33--------------------------------------0.33------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................GTGCAGGAGTGGTGGGAGCT....2030.330.33-------------------------------------------------------------------------------------------------0.33-------------------------------------------------------------------------------------------------------------
.......GGGACCTGGGACAGCTTCC.........................................................................................................................................................................1930.330.33-------------------------------------0.33-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................TGCAGGAGTGGTGGGAGC.....1840.250.25-------------------------------------0.25-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......TGGGACCTGGGACAGCTT...........................................................................................................................................................................1840.250.25---------------------------------------0.25-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................AGTTCATGGCTGGAGAA..................................................................................................................................................1740.250.25-------------0.25-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................GCCGAGGGGTGGTGGCT.................................................................................................1740.250.25-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.25-------------
.................................GTTCATGGCTGGAGAAGAA...............................................................................................................................................1940.25228.50----------------------------------------------------------------------------------------0.25----------------------------------------------------------------------------------------------------------------------
.................................GTTCATGGCTGGAGAAAAAA..............................................................................................................................................2050.201.20-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.20-
.................................GTTCATGGCTGGAGAAC.................................................................................................................................................1750.201.200.20--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
TGAGCCTGGGACCTGGGACAGCTTCCTGGAAAAGTTCATGGCTGGAGAAGGTGGGCTTGACTGGAGGAAGGAGGGTGTGAAGCCGAGGGGTGGTGGCTATAACGTACAGCAACCCTGTGTCGGTGCCCCCTGCCCGCTTCTCTAGTGTCCTACGGGTCCTGGTACCAGCACGTGCAGGAGTGGTGGGAGCTGAGC
............................................................((((((((.((((((.((...((((((((((.((.((......))...)).)))))...))))))).))))..))..))))))))..................................................
.........................................................58.....................................................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577742(Rovira)
total RNA. (breast)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
TAX577739(Rovira)
total RNA. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577744(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577580(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577741(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577745(Rovira)
total RNA. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
TAX577590(Rovira)
total RNA. (breast)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029126(GSM416755)
143B. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM532890(GSM532890)
G576T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM532883(GSM532883)
G871N. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)
GSM532886(GSM532886)
G850T. (cervix)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................................AGGACCCGTAGGACACTAGAGAAGCG................................... 2621.001.00--------------------------------------------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------
...........................................................................................................................................................................GTGCAGGAGTGGTGGTTTG..... 191.000.00---------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................CTAGAGAAGCGGGCAGGGGGC.................................................. 2120.500.50---------------------0.50-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................ACGTTATAGCCACCACCCCTCGGC.......................................................................................... 2420.500.50----------------------------------------------------------------------------------------------------0.50----------------------------------------------------------------------------------------------------------
..............................................CCTTCCTCCAGTCAAGCCCACCTTC............................................................................................................................ 2520.500.50------------------------------0.50--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................CCCTCGGCTTCACACC.......................................................................................................... 1640.250.25------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.25--------------
.......................................................CCTTCCTCCAGTCAAG............................................................................................................................ 1640.250.25--------------------------------------------0.25------------------------------------------------------------------------------------------------------------------------------------------------------------------