ID: uc002dvv.1_intron_1_0_chr16_30046803_r.5p
GENE: AK097527(1)
chr16:30047276-30047525-


(1)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(2)
BREAST
(16)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(3)
LIVER
(4)
OTHER
(14)
SKIN
(1)
TESTES

Sense strand
TGAGGAGAAACATCAACCTCCCTTTCTGTCTTCCAACCTGTCCCTCTGAGGTGAGGACTGGGGAGAAGGTAGAGGTGACTTAGGGTGGGCGGCGGGCGGGGCATGCAGAAGATGGAAAATGGTGGAGTTTAAGAGTAGGAGGAGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCAGATCACTTGAGGTCAGGAATTCGAGACCATCCTGGCCAACACAGTAAAGT
......................................................(((((............(((....))).......(((((.......)).)))...................)))))........................................................................................................................
..................................................51.......................................................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029127(GSM416756)
A549. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR040022(GSM532907)
G575N. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................AATGGTGGAGTTTAAAAAA..................................................................................................................199.000.00----4.00------------------------1.00-1.00----1.00----------1.001.00--
.....................................................................................................................AATGGTGGAGTTTAATC....................................................................................................................177.000.00--7.00------------------------------------------------
.....................................................................................................................AATGGTGGAGTTTAAGACT..................................................................................................................1914.003.00-------2.002.00------------------------------------------
......................................................................................................................ATGGTGGAGTTTAAGACT..................................................................................................................183.000.00-------------------1.00---------------1.00--1.00------------
.....................................................................................................................AATGGTGGAGTTTAAGAC...................................................................................................................1813.003.00---1.00---------2.00-------------------------------------
.....................................................AGGACTGGGGAGAAGTCTG..................................................................................................................................................................................193.000.00------------2.00---------------------1.00----------------
.....................................................................................................................AATGGTGGAGTTTAAGA....................................................................................................................1713.003.00----------2.00---------------1.00------------------------
...........................................................................................................................................................................................................................TTCGAGACCATCCTGGCCAACGG........233.000.003.00--------------------------------------------------
.................................................................................AGGGTGGGCGGCGGGTAG.......................................................................................................................................................182.000.00-------------------------1.00------------------1.00------
.......................................................................................................TGCAGAAGATGGAAAAGAA................................................................................................................................192.000.00-----2.00---------------------------------------------
.............................................................................................................................................................................................................................CGAGACCATCCTGGCCAAGCTG.......222.000.00-2.00-------------------------------------------------
.....................................................................................................................AATGGTGGAGTTTAAGATT..................................................................................................................1912.003.00---2.00-----------------------------------------------
...................................................TGAGGACTGGGGAGATGGC....................................................................................................................................................................................192.000.00-----------2.00---------------------------------------
..................................................GTGAGGACTGGGGAGCTGG.....................................................................................................................................................................................191.000.00------1.00--------------------------------------------
..................................AACCTGTCCCTCTGAGC.......................................................................................................................................................................................................171.000.00-------------------------------------------1.00-------
............................................................................................................................................................................................CCGAAGCGGGCAGATATGG...........................................191.000.00----------------1.00----------------------------------
..................................................GTGAGGACTGGGGAGTTGG.....................................................................................................................................................................................191.000.00------1.00--------------------------------------------
.....................................................AGGACTGGGGAGAAGCATG..................................................................................................................................................................................191.000.00---------------------------------------1.00-----------
.........................................................................................................CAGAAGATGGAAAATTGA...............................................................................................................................181.000.00---------------------1.00-----------------------------
.....................................................................................................................AATGGTGGAGTTTAAGGCT..................................................................................................................191.000.00-------------------------------------1.00-------------
.........................................................................................................................................................................................................................AATTCGAGACCATCCTGGCCATT..........231.000.00------------------------------1.00--------------------
...........................................................................................................................................................................................................................TTCGAGACCATCCTGGCCAACACCCC.....261.000.001.00--------------------------------------------------
...........................................................................................................................................................................................................................TTCGAGACCATCCTGGCCAACGGC.......241.000.001.00--------------------------------------------------
...........................................................GGGGAGAAGGTAGAGGTCGTG..........................................................................................................................................................................211.000.00----------------------1.00----------------------------
..............................................................................................................................................AGCTGGGTGCAGTGGCTCATGCCTGCAG................................................................................281.000.001.00--------------------------------------------------
.................................................................................................................................................................................................................AGGTCAGGAATTCGAGAAC......................191.000.00----------------------------------------1.00----------
.................................................................................AGGGTGGGCGGCGGGTAA.......................................................................................................................................................181.000.00-----------------1.00---------------------------------
...............................................................................................................................................................................................................................AGACCATCCTGGCCAACAGCAG.....221.000.00-1.00-------------------------------------------------
...............................................................................................................................................................................................................................AGACCATCCTGGCCAACTGCG......211.000.001.00--------------------------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCAACTTAC......241.000.00--------------------------------1.00------------------
................................................................................................................................................................................CACTTTGGGAGGCCGAAGCGGGCATT................................................261.000.00------------------------------------------1.00--------
........................................................................................GCGGCGGGCGGGGCAGGC................................................................................................................................................181.000.00------------------1.00--------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCAACACGGGA....261.000.001.00--------------------------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCAACACACAG....261.000.001.00--------------------------------------------------
.........................................................................................................................................................................................................................AATTCGAGACCATCCTGGCCAACACGGT.....281.000.001.00--------------------------------------------------
................................................................................................................................................................................................AGCGGGCAGATCACTTGAGGTCAGGAA...............................2740.250.250.25--------------------------------------------------
.......................................................................................................................TGGTGGAGTTTAAGA....................................................................................................................1580.120.12-------------------------------------------------0.12-

Antisense strand
TGAGGAGAAACATCAACCTCCCTTTCTGTCTTCCAACCTGTCCCTCTGAGGTGAGGACTGGGGAGAAGGTAGAGGTGACTTAGGGTGGGCGGCGGGCGGGGCATGCAGAAGATGGAAAATGGTGGAGTTTAAGAGTAGGAGGAGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCAGATCACTTGAGGTCAGGAATTCGAGACCATCCTGGCCAACACAGTAAAGT
......................................................(((((............(((....))).......(((((.......)).)))...................)))))........................................................................................................................
..................................................51.......................................................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029127(GSM416756)
A549. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR040022(GSM532907)
G575N. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................GCTGGGTGCAGTGGCTCATGCCTGTGAAG.............................................................................. 292.000.00-2.00-------------------------------------------------
...................................................................................................................................................................................................................................CATCCTGGCCAACACAGATA... 202.000.00---2.00-----------------------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCACCCG........ 222.000.00-2.00-------------------------------------------------
..........................................................................................................................................................................................GGCCGAAGCGGGCAGATCACTCCC........................................ 242.000.001.001.00-------------------------------------------------
................................................................................................................................................................................................AGCGGGCAGATCACTTGAGGTCAAGA................................ 262.000.00---------2.00-----------------------------------------
................................................................................................................................................................................................................................GACCATCCTGGCCAACACACCG.... 221.000.001.00--------------------------------------------------
................................................................................................................................................................................................................................GACCATCCTGGCCAACACAGTCCG.. 241.000.001.00--------------------------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCAACAGAG...... 241.000.00----------------------------------------------1.00----
.............................................................................................................................................GAGCTGGGTGCAGTGGCTCATGCCTGTGCT............................................................................... 301.000.00-1.00-------------------------------------------------
...........................................................................................................................................................................................................................TTCGAGACCATCCTGGCCAAAA......... 221.000.00---------------------------------------------1.00-----
.................................................................................................................................................TGGGTGCAGTGGCTCATGCCTGTTGTG.............................................................................. 271.000.001.00--------------------------------------------------
..............................................................................................GGCGGGGCATGCAGAGG........................................................................................................................................... 171.000.00-----------------------------------------1.00---------
....................................................................................GTGGGCGGCGGGCGGGG..................................................................................................................................................... 171.000.00-----1.00---------------------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCAACACCCT..... 251.000.001.00--------------------------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCAACCCT....... 231.000.001.00--------------------------------------------------
.....................................................................................................................................................................................TGGGAGGCCGAAGCGGGCAGATTT............................................. 241.000.00---------------1.00-----------------------------------
...........................................................................................................................................AGGAGCTGGGTGCAGTGGCTTTC........................................................................................ 231.000.001.00--------------------------------------------------
.....................................................................................................................................................................................................................................TCCTGGCCAACACAGCGA... 181.000.00------------------------1.00--------------------------
..........................................................................................................................................................................................GGCCGAAGCGGGCAGATCACTCTC........................................ 241.000.00-1.00-------------------------------------------------
............................................................................................................................................................................................................ACTTGAGGTCAGGAATTCTAA......................... 211.000.00--------------------1.00------------------------------
...................................................................................................................................................................................................................................GTGTTGGCCAGGATG........ 1501.001.00-----------------------1.00---------------------------
................................................................................................................................................................................................................................GACCATCCTGGCCAACACAGTCCA.. 241.000.00-1.00-------------------------------------------------
..............................................................................................................................................................................AGCACTTTGGGAGGCCGAAGCCTG.................................................... 241.000.00----------------------------1.00----------------------
................................................................................................................................................................................................................................GACCATCCTGGCCAACACAGCCG... 231.000.00-1.00-------------------------------------------------
.........................................................................................................ACCATTTTCCATCTTCTG............................................................................................................................... 1811.001.00---------------------------------1.00-----------------
.................................................................................................................................................TGGGTGCAGTGGCTCATGCCTGTTAG............................................................................... 261.000.00-1.00-------------------------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCAACAGCG...... 241.000.00-1.00-------------------------------------------------
............................................................................................................................................................................................................................TCGAGACCATCCTGGCCAACACGTC..... 251.000.001.00--------------------------------------------------
......................................................................................................................................................................................................CAGATCACTTGAGGTAAAA................................. 191.000.00--------------1.00------------------------------------
.................................................................................................................................................................................................................................ACCATCCTGGCCAACAAGAG..... 201.000.00---------------------------1.00-----------------------
.............................................................................................................................................GAGCTGGGTGCAGTGGCTCATGCCTGGG................................................................................. 281.000.00-1.00-------------------------------------------------
...................................................................................CCGCCCGCCGCCCACC....................................................................................................................................................... 1680.120.12--------------------------------------------------0.12