ID: uc002dpy.1_intron_4_0_chr16_28499984_r.5p
GENE: CLN3(1)
chr16:28502835-28503084-


(1)
AGO2.ip
(2)
B-CELL
(2)
BREAST
(18)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(32)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGCGATGGGAGGCTGTGCAGGCTCGCGGCGGCGCTTTTCGGATTCCGAGGGTGAGTATTCCCGCCCACCCTCATGGAACGACCACCTCTGGCTCGCAGCCCACCTGAGGGGAATGAGAGCTGACTCGGCCCCGGGAGGACACGCAAGGAGCGGTCGTGCACCTGAGAGTAGGTGGGGGTCATGCCCTCTTCTCGCTCTCCCAGGGGAGGAGACCGTCCCGGAGCCCCGGCTCCCTCTGTTGGACCATCAG
...........................................................((((((.((.((((.((.((((((..(((((((.....)))..(((..((((..((((......)))).))))...)))........)))).))))))...)))))).)).))))))..........................................................................
..................................................51...........................................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
..................................................GTGAGTATTCCCGCC.........................................................................................................................................................................................15116.0016.006.00----2.001.00----2.00-1.00---1.00--------------1.00-1.00--------1.00-------------------
..................................................GTGAGTATTCCCGCCTGTC.....................................................................................................................................................................................19114.0016.00-5.001.00-3.00-1.00--1.00---------------1.00-------------1.00----------1.00------------
........................................................................................................................................................GTCGTGCACCTGAGAGTAGG..............................................................................2014.004.00--4.00------------------------------------------------------------
.................................................GGTGAGTATTCCCGCCTGTC.....................................................................................................................................................................................204.000.00---1.00------2.00-----------------------------1.00----------------------
..................................................GTGAGTATTCCCGCCT........................................................................................................................................................................................1612.0016.00-----1.00------------------------------------------------------1.00--
..................................................................................................................................................................TGAGAGTAGGTGGGGGTCAT....................................................................2012.002.00---2.00-----------------------------------------------------------
............................................................................................................................................................................................................................GAGCCCCGGCTCCCTCTTTTT.........211.000.00------------1.00--------------------------------------------------
..................................................................................................................................................................TGAGAGTAGGTGGGGGTCATG...................................................................2111.001.00------------------------------------------------1.00--------------
.......................................................................................................................................................................................................................................CCCTCTGTTGGACCATCAG1911.001.00----------------------------------------------------1.00----------
...........................................................................................................................................CACGCAAGGAGCGGTTGC.............................................................................................181.000.00-----------------------------------1.00---------------------------
..................................................GTGAGTATTCCCGCCTG.......................................................................................................................................................................................1711.0016.00-----------------------------------------------------1.00---------
.................................................................................CCACCTCTGGCTCGCAGC.......................................................................................................................................................1811.001.00----------------------1.00----------------------------------------
..................................................GTGAGTATTCCCGCCCGTCA....................................................................................................................................................................................201.000.00------------------------------------------------------1.00--------
.................................................................................................................................................................................................................AGACCGTCCCGGAGCCCCGGCTCCCCC..............271.000.00--------------------------------------------1.00------------------
.................................................GGTGAGTATTCCCGCCTGT......................................................................................................................................................................................191.000.00---------------------------------1.00-----------------------------
...................................................................................................................................................................GAGAGTAGGTGGGGGTCATG...................................................................2011.001.00---------1.00-----------------------------------------------------
................................................................................................................................................................CCTGAGAGTAGGTGGGGGTCAT....................................................................2211.001.00---1.00-----------------------------------------------------------
........GAGGCTGTGCAGGCTCGCG...............................................................................................................................................................................................................................1911.001.00-------------------------------1.00-------------------------------
..................................................GTGAGTATTCCCGCCTTT......................................................................................................................................................................................1811.0016.00------------------------------------------1.00--------------------
.................................................................................................................................................................................GTCATGCCCTCTTCTC.........................................................1630.670.67--------------------0.67------------------------------------------
.................................................GGTGAGTATTCCCGC..........................................................................................................................................................................................1520.500.50-------------------------------------------------------------0.50-
.GCGATGGGAGGCTGTG.........................................................................................................................................................................................................................................1630.330.33--------------------------------------------------------------0.33

Antisense strand
TGCGATGGGAGGCTGTGCAGGCTCGCGGCGGCGCTTTTCGGATTCCGAGGGTGAGTATTCCCGCCCACCCTCATGGAACGACCACCTCTGGCTCGCAGCCCACCTGAGGGGAATGAGAGCTGACTCGGCCCCGGGAGGACACGCAAGGAGCGGTCGTGCACCTGAGAGTAGGTGGGGGTCATGCCCTCTTCTCGCTCTCCCAGGGGAGGAGACCGTCCCGGAGCCCCGGCTCCCTCTGTTGGACCATCAG
...........................................................((((((.((.((((.((.((((((..(((((((.....)))..(((..((((..((((......)))).))))...)))........)))).))))))...)))))).)).))))))..........................................................................
..................................................51...........................................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
.........................................................................................................................GACTCGGCCCCGGGAGCGG.............................................................................................................. 1914.000.00-------1.003.00----1.001.00-1.001.001.002.00----1.00----------------1.00---1.00-----------------
........................................................................................................................TGACTCGGCCCCGGGCGGC............................................................................................................... 197.000.00-------1.00-------2.00----1.00-----1.00---------1.00----------1.00---------------
.........................................................................................................................GACTCGGCCCCGGGAGC................................................................................................................ 174.000.00------------------1.00---------1.00--------1.00--------------------1.00----
........................................................................................................................TGACTCGGCCCCGGGCGG................................................................................................................ 182.000.00------1.00--------------------1.00-----------------------------------
.......................................................................................................................................................................................................................TCCCGGAGCCCCGGCGCG................. 181.000.00-------------------------------------------------------1.00-------
.........................................................................................................................GACTCGGCCCCGGGAGGA............................................................................................................... 181.000.00---------------------------------------------------1.00-----------
........................................................................................................................TGACTCGGCCCCGGGACGGC.............................................................................................................. 201.000.00-----------------------1.00---------------------------------------
..............................................................................................................................................................................................................................GCCCCGGCTCCCTCTACCC......... 191.000.00---------------------1.00-----------------------------------------
.........................................................................................................................GACTCGGCCCCGGGACAGC.............................................................................................................. 191.000.00----------------1.00----------------------------------------------
...........................................................................................................................................................................................................................GGAGCCCCGGCTCCCTCTAG........... 201.000.00------------1.00--------------------------------------------------
................................................................................................................................................................................................................................TCCAACAGAGGGAGCCGGG....... 1911.001.00-------------------------------------------------1.00-------------
....................................................................................................................................................................................................................CCGTCCCGGAGCCCCGGCT................... 191.000.00-----------------------------------------------------------1.00---
......................................................................................................................GCTGACTCGGCCCCGGGAG................................................................................................................. 191.000.00--------------------------------------1.00------------------------
................................................................................................................................................................................................................................CCCGGCTCCCTCTGTTTCT....... 191.000.00-----------------------------1.00---------------------------------
.........................................................................................................................GACTCGGCCCCGGGAGCG............................................................................................................... 181.000.00-------1.00-------------------------------------------------------
...............................................................................................................................................................................................TCGCTCTCCCAGGGGCTGC........................................ 191.000.00--------------------------------------------------------1.00------
..........................................................................................................................ACTCGGCCCCGGGAGGG............................................................................................................... 171.000.00--------------1.00------------------------------------------------
......................................................................................................................GCTGACTCGGCCCCGGGGA................................................................................................................. 191.000.00------------------------------1.00--------------------------------
........................................................................................................................TGACTCGGCCCCGGGACGA............................................................................................................... 191.000.00---------------------------------------------------------1.00-----