ID: uc002dov.1_intron_12_0_chr16_27495675_r.3p
GENE: (24)
chr16:27495625-27495874-


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(3)
BRAIN 		(7)
BREAST 		(14)
CELL-LINE 		(3)
FIBROBLAST 		(2)
HELA 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(6)
SKIN

Sense strand
GTCCTATACTTGTCTGCCCAGAATCTCCCTCAGTGTCTGGCACATGGTGGGCCCAGTAAATATTGTGAGGTGACAGTTGTGGGGATTCTCTGAGGAAGGAGGCTGCACAAAACACATTTTGTCCACTTTTTTATGGTAATTCCCCATGATGTCGTCTCTGAGGATACTGACTTTTTGTCTTGGCTCTGTGTTTGATCCAGGTGAAGGGCCCATTTGTCACCTGGCAGGTGGTACGGGACATTTTGCATGC
.....................................................................................(((((.((((..(((((.((.((((((....)))))).)))))))((((((.......)))))).....)))).)))))......................................................................................
.....................................................................................86...............................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577739(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................TGAGGAAGGAGGCTGCATAGT...........................................................................................................................................217.000.00-1.002.001.001.00---------------------------1.00--1.00------
..........................................................................................TGAGGAAGGAGGCTGCATAG............................................................................................................................................206.000.003.00---1.00-1.00-1.00---------------------------------
............................................................................................................................................TCCCCATGATGTCGTCTCTGAGG.......................................................................................2314.004.00---------1.00----------1.001.00-----1.00--------------
..........................................................................................TGAGGAAGGAGGCTGCAGAGT...........................................................................................................................................212.000.00-----------1.00-----1.00------------------------
..........................................................................................TGAGGAAGGAGGCTGCAGGGT...........................................................................................................................................212.000.00---1.00------------------------------1.00-------
........................................................................................TCTGAGGAAGGAGGCTGCACAAAA..........................................................................................................................................2412.002.00-----2.00------------------------------------
..........................................................................................TGAGGAAGGAGGCTGCACAGTT..........................................................................................................................................222.000.00-1.00-----1.00----------------------------------
.............................................................................................................................................CCCCATGATGTCGTCTCTGAGG.......................................................................................2211.001.00---------1.00--------------------------------
...............................................TGGGCCCAGTAAATATTGT........................................................................................................................................................................................1911.001.00-------------------------------1.00----------
..........................................................................................TGAGGAAGGAGGCTGCACAGG...........................................................................................................................................211.000.00---1.00--------------------------------------
..........................................................................................TGAGGAAGGAGGCTGCATA.............................................................................................................................................191.000.00---------------1.00--------------------------
............................................................................................................................................TCCCCATGATGTCGTCTCTGAGT.......................................................................................231.000.00------------------------------1.00-----------
............................................................TATTGTGAGGTGACAGTTGTGGG.......................................................................................................................................................................2311.001.00----------1.00-------------------------------
.......................................................................................................................................................................................................................GTCACCTGGCAGGTGGCTC................191.000.00------------------------1.00-----------------
...........................................................................................................................CACTTTTTTATGGTAATTCCCCATGATGTCGTCTCTGAGGATACTGACTTTTTGTCTTGGCTC................................................................6311.001.00-----------------------------1.00------------
................................................................................GGGGATTCTCTGAGGAAGGAGGCTGCA...............................................................................................................................................2711.001.00---------------------------------1.00--------
......................................................................................TCTCTGAGGAAGGAGGCTGCA...............................................................................................................................................2111.001.00-----------------------1.00------------------
..........................................................................................TGAGGAAGGAGGCTGCATAGG...........................................................................................................................................211.000.00------------------1.00-----------------------
..........................................................................................TGAGGAAGGAGGCTGCATAGA...........................................................................................................................................211.000.00-------------------------1.00----------------
...................................................................AGGTGACAGTTGTGGGCTG....................................................................................................................................................................191.000.00--------------1.00---------------------------
..........................................................................................TGAGGAAGGAGGCTGCTTAG............................................................................................................................................201.000.001.00-----------------------------------------
.......................................................................................................................................................................................................................GTCACCTGGCAGGTGGATA................191.000.00-------------------1.00----------------------
........................................................................................TCTGAGGAAGGAGGCTGCACAA............................................................................................................................................2211.001.00-------------1.00----------------------------
..........................................................................................TGAGGAAGGAGGCTGCACAGTTA.........................................................................................................................................231.000.00-------------------------------------1.00----
..................................................................................................................................................................................................................................GGTGGTACGGGACATTTTG.....1911.001.00--------------------------------------1.00---
..........................................................................................TGAGGAAGGAGGCTGCAGAG............................................................................................................................................201.000.00----1.00-------------------------------------
.......................................................................................................................................................................................................................GTCACCTGGCAGGTGACTC................191.000.00---------------------------------------1.00--
...................................................................................................................................................................................TTGGCTCTGTGTTTGATCC....................................................1911.001.00----------------1.00-------------------------
..........................................................................................TGAGGAAGGAGGCTGCACAGCT..........................................................................................................................................221.000.00-------1.00----------------------------------
..........................................................................................TGAGGAAGGAGGCTGCACGGAT..........................................................................................................................................221.000.00-1.00----------------------------------------
..........................................................................................TGAGGAAGGAGGCTGCACAGTTG.........................................................................................................................................231.000.00-1.00----------------------------------------
..........................................................................................TGAGGAAGGAGGCTGCACAT............................................................................................................................................201.000.00------1.00-----------------------------------
........................................................................................TCTGAGGAAGGAGGCTGCACAAAAC.........................................................................................................................................2511.001.00------------1.00-----------------------------
.....................................................................................TTCTCTGAGGAAGGAGGCTGCACAAAA..........................................................................................................................................2711.001.00----------------------1.00-------------------
..........................................................................................TGAGGAAGGAGGCTGCACGGTT..........................................................................................................................................221.000.00--------1.00---------------------------------
..............................................................TTGTGAGGTGACAGTTGTGGGGACCC..................................................................................................................................................................261.000.00--------------------------1.00---------------
..........................................................................................TGAGGAAGGAGGCTGCAGAGA...........................................................................................................................................211.000.00--1.00---------------------------------------
.......................................................................................................................................................................................................................GTCACCTGGCAGGTGGCTCT...............201.000.00------------------------------------1.00-----
..........................................................................................TGAGGAAGGAGGCTGCACAGTG..........................................................................................................................................221.000.00-1.00----------------------------------------
..........................................................................................................................................................TCTCTGAGGATACTGACTTTA...........................................................................211.000.00----------------------------1.00-------------
.........................................................................................CTGAGGAAGGAGGCTGCAC..............................................................................................................................................1920.500.50----------------------------------------0.50-
..............................................................................................................................TTTTTTATGGTAATTC............................................................................................................1650.200.20-----------------------------------------0.20

Antisense strand
GTCCTATACTTGTCTGCCCAGAATCTCCCTCAGTGTCTGGCACATGGTGGGCCCAGTAAATATTGTGAGGTGACAGTTGTGGGGATTCTCTGAGGAAGGAGGCTGCACAAAACACATTTTGTCCACTTTTTTATGGTAATTCCCCATGATGTCGTCTCTGAGGATACTGACTTTTTGTCTTGGCTCTGTGTTTGATCCAGGTGAAGGGCCCATTTGTCACCTGGCAGGTGGTACGGGACATTTTGCATGC
.....................................................................................(((((.((((..(((((.((.((((((....)))))).)))))))((((((.......)))))).....)))).)))))......................................................................................
.....................................................................................86...............................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577739(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................ACAAAACACATTTTGCCT.............................................................................................................................. 181.000.001.00-----------------------------------------