ID: uc002dlr.3_intron_6_0_chr16_23546682_r.3p
GENE: (2)
chr16:23546632-23546881-


(1)
AGO2.ip 		(2)
B-CELL 		(6)
BRAIN 		(7)
BREAST 		(3)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TAGATAGGCAGACATTAGTGTCTGCTACACCATGTTATCTCAGTTTTCCACACAACTGTACCATCATCCCTGTTATAGACTGAGGAAGCAGCTTGCAGCAGTAACTGACTTGCTTAAGGTCACACAGCTATGACAGAGGTAGGACTCCTGTCCATCAACCTTTCCATCAACAGTACTCATGCTGCTCTGCTCCCCATCAGGTATGACAATCGGTGCAGGAACATGAGCCAGGAGCAGGTGGCCCAGAAGC
.............................................................................(((((((.((((((.((((....))))))).))).)))..)))).............((((((.((((....))))....)))))).......................................................................................
...........................................................................76........................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553576(SRX182782)
source: Testis. (testes)		SRR189784DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577743(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................CAGAGGTAGGACTCCTGTCCATCAACCTTTCCATCAACAGTACTCATGCTGCTCTGCTCCCCAT.....................................................6418.008.00---8.00---------------------------------
................................................................................TGAGGAAGCAGCTTGCAAAG......................................................................................................................................................207.000.007.00------------------------------------
................................................................................TGAGGAAGCAGCTTGTATA.......................................................................................................................................................197.000.001.00----1.001.00-1.00---1.00--------------1.00----1.00----
................................................................................TGAGGAAGCAGCTTGCATAG......................................................................................................................................................205.000.003.00-2.00----------------------------------
.........................................................................................................................................................................................................TATGACAATCGGTGCAGGAACATGAGC......................2715.005.00-5.00-----------------------------------
................................................................................TGAGGAAGCAGCTTGCACAG......................................................................................................................................................204.000.002.00-2.00----------------------------------
................................................................................TGAGGAAGCAGCTTGTAT........................................................................................................................................................183.000.00--1.00---1.00-----------------1.00------------
.....................................................................................................................................................................................................................................AGGAGCAGGTGGCCCAGAAGCTGA242.000.00-----------2.00-------------------------
........................................................................................................................................................................................................................AGGAACATGAGCCAGGAGCAGGTGGCCCAGA...3112.002.00---------2.00---------------------------
................................................................................TGAGGAAGCAGCTTGCACAGT.....................................................................................................................................................212.000.00---------------1.00------------1.00--------
.....................................................................................................................................................................................................................TGCAGGAACATGAGCCAGGAGCAGGT...........2612.002.00-2.00-----------------------------------
...........................................................................................................................................................................................................TGACAATCGGTGCAGGAACATGAGC......................2512.002.00-2.00-----------------------------------
.........................................................................................................................................................................................................TATGACAATCGGTGCAGG...............................1812.002.00----------2.00--------------------------
...............................................................................................................................................................................................................AATCGGTGCAGGAACATGAGCCAGGAGCAG.............3012.002.00----2.00--------------------------------
................................................................................TGAGGAAGCAGCTTGCATGGT.....................................................................................................................................................211.000.00------------1.00------------------------
.............................................................................................................................................................................................................ACAATCGGTGCAGGAACG...........................181.000.00--1.00----------------------------------
................................................................................TGAGGAAGCAGCTTGTGG........................................................................................................................................................181.000.00--------------------1.00----------------
.........................................................................................................................................................................................................................GGAACATGAGCCAGGAG................1721.001.00--------------------------1.00----------
..........................................................TACCATCATCCCTGTAAG..............................................................................................................................................................................181.000.00--1.00----------------------------------
...........................................................................................................................................................................................................TGACAATCGGTGCAGGAACAT..........................2111.001.00-------1.00-----------------------------
......................................................................................................................................................................................................................GCAGGAACATGAGCCAGGAGCAGG............2411.001.00----------------1.00--------------------
................................................................................TGAGGAAGCAGCTTGCATAGT.....................................................................................................................................................211.000.00-------1.00-----------------------------
................................................................................TGAGGAAGCAGCTTGTGAA.......................................................................................................................................................191.000.001.00------------------------------------
................................................................................TGAGGAAGCAGCTTGTTTT.......................................................................................................................................................191.000.00------1.00------------------------------
................................................................................TGAGGAAGCAGCTTGTTT........................................................................................................................................................181.000.00-----1.00-------------------------------
..............................................................................................................................................................................................................................ATGAGCCAGGAGCAGAGAT.........191.000.00-----------------------------------1.00-
........................................................................................................................................................................................................................AGGAACATGAGCCAGGAGCAGGTGGCCCAGAAGC3411.001.00----1.00--------------------------------
.................................................................................................GCAGTAACTGACTTGAGGA......................................................................................................................................191.000.00-------------------------------1.00-----
...............................................................................................................................................................................................................................TGAGCCAGGAGCAGGTGGCCC......2111.001.00------------------1.00------------------
......................................................................................................................................................................................................................GCAGGAACATGAGCCAGGAGCAGGT...........2511.001.00------------------------------1.00------
............................................................................AGACTGAGGAAGCAGCTTGCAGCAGC....................................................................................................................................................261.000.00-------------------------1.00-----------
................................................................................TGAGGAAGCAGCTTGCAAAGT.....................................................................................................................................................211.000.00-----1.00-------------------------------
................................................................................TGAGGAAGCAGCTTGTAG........................................................................................................................................................181.000.00--------1.00----------------------------
................................................................................TGAGGAAGCAGCTTGTTG........................................................................................................................................................181.000.00---------------------1.00---------------
................................TGTTATCTCAGTTTTCAGAG......................................................................................................................................................................................................201.000.00--1.00----------------------------------
................................................................................TGAGGAAGCAGCTTGCATATT.....................................................................................................................................................211.000.00-----------------1.00-------------------
................................................................................TGAGGAAGCAGCTTGCATAT......................................................................................................................................................201.000.001.00------------------------------------
........................................................................................................................................................................................................GTATGACAATCGGTGCAGGAACATGAGCCAGGAG................3411.001.00----1.00--------------------------------
................................................................................................................................................CTCCTGTCCATCAACAAG........................................................................................181.000.00----------------------1.00--------------
................................................................................TGAGGAAGCAGCTTGTGGG.......................................................................................................................................................191.000.00-----------------------1.00-------------
.........................................................................................................................................................................................................TATGACAATCGGTGCAGGAACATGAGCCA....................2911.001.00-1.00-----------------------------------
.......................................................................................................................................................................................................GGTATGACAATCGGTGCAGGAACATG.........................2611.001.00---------------------------------1.00---
................................................................................................................................................................................TCATGCTGCTCTGCTGTTG.......................................................191.000.00--1.00----------------------------------
................................................................................................................................................................................................................ATCGGTGCAGGAACATGAG.......................1911.001.00--------------1.00----------------------
........................................................................................................................................................................................................GTATGACAATCGGTGCAGGAACATG.........................2511.001.00----1.00--------------------------------
......................................................................TGTTATAGACTGAGGAAG..................................................................................................................................................................1811.001.00-------------1.00-----------------------
................................................................................TGAGGAAGCAGCTTGCAGAGTT....................................................................................................................................................221.000.00----------------------------------1.00--
.......................................................................GTTATAGACTGAGGA....................................................................................................................................................................1540.250.25------------------------------------0.25
.......................................................................GTTATAGACTGAGGATCAA................................................................................................................................................................1940.250.25-----0.25-------------------------------

Antisense strand
TAGATAGGCAGACATTAGTGTCTGCTACACCATGTTATCTCAGTTTTCCACACAACTGTACCATCATCCCTGTTATAGACTGAGGAAGCAGCTTGCAGCAGTAACTGACTTGCTTAAGGTCACACAGCTATGACAGAGGTAGGACTCCTGTCCATCAACCTTTCCATCAACAGTACTCATGCTGCTCTGCTCCCCATCAGGTATGACAATCGGTGCAGGAACATGAGCCAGGAGCAGGTGGCCCAGAAGC
.............................................................................(((((((.((((((.((((....))))))).))).)))..)))).............((((((.((((....))))....)))))).......................................................................................
...........................................................................76........................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553576(SRX182782)
source: Testis. (testes)		SRR189784DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577743(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................GTTATCTCAGTTTTCCATGG..................................................................................................................................................................................................... 201.000.00-------1.00-----------------------------
.................................................................................................................................................................................CATGCTGCTCTGCTCGCTA...................................................... 191.000.00-------------------1.00-----------------
....................................................................................................................AGGTCACACAGCTATGGAA................................................................................................................... 191.000.00-----------------------------1.00-------
.....................................................................................................................................................................ATGAGTACTGTTGAT...................................................................... 1540.250.25-------------0.25-----------------------