ID: uc002djg.1_intron_1_0_chr16_21654476_r
GENE: (4)
chr16:21654426-21654918-


(1)
AGO2.ip 		(2)
B-CELL 		(8)
BRAIN 		(10)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
HELA 		(3)
LIVER 		(4)
OTHER

Sense strand
CAAAATCCAACCCTCTAAGAAACAAAGAAATAAAAGAAGACTCACAAAAGGTACAGACCAACACTTGAAAAATATTTTTTAAATTGTGGCTGGTTGTAACGATTTCAAAACTGAAATATTTTTTAGCTTTTAAATATTTAAATGTTAAGTTTAAACAGAATATCAAGGTAACTTTCAACTGCAGACACTATTTCCTATTGTTGAGAAACTCAATGACAAAATAATCTCAAGGGGTAAACTGTGACTTAAATTGGACAGTTCTCAACCATAAATTATATTTAAAGTTCTCAAATACAAAAGAGTTAACTGTAGGCACATATGTGTTGGGGGAGGGGGTAGTTTTTGGGACCGGTGGCAATAGAGCAAGAAAAGTTCTGATGATGCGTCGTTATCATCGCTTATATTCCCAAAAGAGAATTTTTTTTTCTCATTTGTCTTTATAGAAGAAGAGTGCTCGGCGTATTTTTCAGGAAATTGCTCAAGAACTATACCA
....................................................................................................................................................................................................................................................................................................................................((((..((..((...(((((((((.....(((...(((((.......)))))(((((((...)))))))...))).....))))))))).....))..))..))))...............................................................
....................................................................................................................................................................................................................................................................................................................................325...................................................................................................................443................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040037(GSM532922)
G243T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGGTGTT...............................................................................................................................................216.000.002.00--1.00----------1.00----1.00-1.00-------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGGTTTT...............................................................................................................................................213.000.002.00----------------------------1.00-----------
....................................................................................................................................................................................................................................................................................................................................TGGGGGAGGGGGTAGTATAG.....................................................................................................................................................203.000.00-3.00---------------------------------------
........................................................................................................................................................................................................................................................................................................................................GGAGGGGGTAGTTTTTTTA..................................................................................................................................................192.000.00---------------------------1.00----1.00--------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGCT..................................................................................................................................................182.000.00-------------1.00-----------------1.00---------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGGCGTT...............................................................................................................................................212.000.002.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTTCAG.................................................................................................................................................192.000.00-1.00-------------------------------------1.00-
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGC...................................................................................................................................................172.000.00----1.00----1.00-------------------------------
........................................................................................................................................................................................................................................................................................................................................GGAGGGGGTAGTTTTTTTTT.................................................................................................................................................201.000.00----------------------1.00------------------
..........................................................................................................................................................................................................................................................................................................................................AGGGGGTAGTTTTTGGTGTT...............................................................................................................................................201.000.00--------1.00--------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCAAAAGAGAACCA.........................................................................181.000.00-----------------------------------1.00-----
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGGGGGT...............................................................................................................................................211.000.001.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................GGAGGGGGTAGTTTTTGTTG.................................................................................................................................................201.000.00-------------------------------------1.00---
.........................................................................................................................................................AACAGAATATCAAGGACCT.................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------1.00---------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTGCTCGGCGTATTTT...........................2111.001.00--1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................GGAGGGGGTAGTTTTTGTTGT................................................................................................................................................211.000.00---1.00-------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGCTTT................................................................................................................................................201.000.001.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGCTGG................................................................................................................................................201.000.00----1.00------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTTCCG.................................................................................................................................................191.000.00---------1.00-------------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTTTTT.................................................................................................................................................191.000.00--------------------1.00--------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGCTGT................................................................................................................................................201.000.00----1.00------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGAGTGCTCGGCGTATTTT...........................2511.001.00------1.00----------------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGTT..................................................................................................................................................181.000.00-------------1.00---------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTATA..................................................................................................................................................181.000.00-1.00---------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTGGCAATAGAGCAATGG............................................................................................................................181.000.00-----------------------1.00-----------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAATTGCTCAAGAACT......2011.001.00--1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................GGAGGGGGTAGTTTTTACAG.................................................................................................................................................201.000.00--------------------------1.00--------------
...........................AAATAAAAGAAGACTCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------1.00----------------------------------
.................................................................................................................................................................................................................................................................................................................................TGTTGGGGGAGGGGGTAGGGTT......................................................................................................................................................221.000.001.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGTAGT................................................................................................................................................201.000.00------------1.00----------------------------
.....................ACAAAGAAATAAAAGAAGACTCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------1.00-------------------------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGGAGGT...............................................................................................................................................211.000.00------------1.00----------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTCTCATTTGGCTT.......................................................211.000.00----------------------------1.00------------
...............................................................................................................................................................................................................................................................................................................................................................................AAAAGTTCTGATGATGCGGGT.........................................................................................................211.000.00-----------1.00-----------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGGAAATTGCTCAAG..........1911.001.00------1.00----------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATTTTTCAGGACT...................171.000.00---------------------------------1.00-------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGGTGT................................................................................................................................................201.000.00--------------1.00--------------------------
........................................................................................................................................................................................................................................................................................................................................GGAGGGGGTAGTTTTTTTG..................................................................................................................................................191.000.001.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................GGAGGGGGTAGTTTTTATT..................................................................................................................................................191.000.001.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................GGAGGGGGTAGTTTTATTT..................................................................................................................................................191.000.00---1.00-------------------------------------
...................AAACAAAGAAATAAAAGAAGACTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00--1.00--------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AGGGGGTAGTTTTTGGTGGT...............................................................................................................................................201.000.00--------1.00--------------------------------
.....................ACAAAGAAATAAAAGAAGACTCATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00----------------------------------------1.00
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTACAG.................................................................................................................................................191.000.00------------------------------1.00----------
.........................................................................................................................................................................................................................................................................................................................................GAGGGGGTAGTTTTTGTTGT................................................................................................................................................201.000.00---------------1.00-------------------------
....................................................................................................................................................................................................................................................................................................................................................TTTTGGGACCGGTGG..........................................................................................................................................1530.330.33-----------------0.33-----------------------

Antisense strand
CAAAATCCAACCCTCTAAGAAACAAAGAAATAAAAGAAGACTCACAAAAGGTACAGACCAACACTTGAAAAATATTTTTTAAATTGTGGCTGGTTGTAACGATTTCAAAACTGAAATATTTTTTAGCTTTTAAATATTTAAATGTTAAGTTTAAACAGAATATCAAGGTAACTTTCAACTGCAGACACTATTTCCTATTGTTGAGAAACTCAATGACAAAATAATCTCAAGGGGTAAACTGTGACTTAAATTGGACAGTTCTCAACCATAAATTATATTTAAAGTTCTCAAATACAAAAGAGTTAACTGTAGGCACATATGTGTTGGGGGAGGGGGTAGTTTTTGGGACCGGTGGCAATAGAGCAAGAAAAGTTCTGATGATGCGTCGTTATCATCGCTTATATTCCCAAAAGAGAATTTTTTTTTCTCATTTGTCTTTATAGAAGAAGAGTGCTCGGCGTATTTTTCAGGAAATTGCTCAAGAACTATACCA
....................................................................................................................................................................................................................................................................................................................................((((..((..((...(((((((((.....(((...(((((.......)))))(((((((...)))))))...))).....))))))))).....))..))..))))...............................................................
....................................................................................................................................................................................................................................................................................................................................325...................................................................................................................443................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040037(GSM532922)
G243T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..................................................................................................................................................................................................CTATTGTTGAGAAACTGA......................................................................................................................................................................................................................................................................................... 183.000.00-------3.00---------------------------------
..................................................................................................................................................................................CTGCAGACACTATTTCCTATTGTCTG................................................................................................................................................................................................................................................................................................. 262.000.00-----2.00-----------------------------------
......AAAAATATTTTTCAAGTGTTGGTCTGTACCTTTTGTGAGTCTTCTTTTATTTCTTTGTTTCTTAGAGGGTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................. 7312.002.00----------------2.00------------------------
....................................................................................................................................................................................................................................................................ATATAATTTATGGTTGAG....................................................................................................................................................................................................................... 1812.002.00----------2.00------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGTATTTTTCATC...................... 171.000.00------------------------1.00----------------
................................................................................................................................................................................................................................................................AGTTCTCAACCATAAATTACTG....................................................................................................................................................................................................................... 221.000.00------------------------------------1.00----
................AAGAAACAAAGAAATAAAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 221.000.00-----1.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAAGAGAATTTTTTCTT................................................................... 211.000.00-----------1.00-----------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................TTGGGAATATAAGCGATGAT................................................................................... 2011.001.00----------------------------------1.00------
......................................................................................................................................................................................................................................................TAAATTGGACAGTTCTG...................................................................................................................................................................................................................................... 171.000.00-----------------1.00-----------------------
.........................................................................................................AAAAAATATTTCAGTTTTG................................................................................................................................................................................................................................................................................................................................................................................. 1911.001.00--------------------------------------1.00--
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAAATTGCTCAAGACCAA..... 221.000.00------------------1.00----------------------