ID: uc002dgk.3_intron_12_0_chr16_19557797_f.5p
GENE: (13)
chr16:19557747-19557996+


(1)
AGO1.ip 		(2)
AGO2.ip 		(5)
B-CELL 		(15)
CELL-LINE 		(6)
CERVIX 		(1)
HEART 		(1)
HELA 		(5)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGAATGCCAAATAAGAAATTTCTGGTTAAACAAAATCCTTCTGAAACAAGGTGAGAAAAATCACTTAGTCTTAATGAGAGGCTTTTTGTTTTTTATAGAAAAAAAAAATTGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCAAGACGGATGGATCACCTGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGGAAAACCCCATCTCTACTAAAAATACAAAATTAGCTGGG
....................................................................(((..(((((((((.....))))))))))))...........((((((((......))))).))).....................................................................................................................
..............................................................63....................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189782GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR189785SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343334SRR040034(GSM532919)
G001N. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR189783SRR040016(GSM532901)
G645N. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................AATTGGCTGGGCACGGTGGCACT.........................................................................................................................2337.000.0029.007.00------1.00-----------------------------------------
............................................................................................................TTGGCTGGGCACGGTGGCACAT........................................................................................................................2224.000.003.0018.00--2.00---1.00-----------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACTT........................................................................................................................2414.000.0012.00---1.00-1.00-------------------------------------------
...........................................................................................................ATTGGCTGGGCACGGTGGCACAT........................................................................................................................2311.000.006.004.00------1.00-----------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACAT........................................................................................................................248.000.006.001.00---------------------1.00--------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACC.........................................................................................................................238.000.007.001.00------------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCATT.........................................................................................................................235.000.004.00-----------------1.00-------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCAA..........................................................................................................................225.000.003.00------------------------------1.00----------1.00-------
...................................................................GTCTTAATGAGAGGCTTTTT...................................................................................................................................................................2015.005.00-----5.00--------------------------------------------
.............................................................................................................TGGCTGGGCACGGTGGCAAG.........................................................................................................................204.000.00-4.00------------------------------------------------
....................................................................................................................................................................................TCGGGAGTTTGAGACCAGCCGGCC..............................................243.000.00--1.002.00----------------------------------------------
.....................................................................................................................................................................................CGGGAGTTTGAGACCAGCCGGCC..............................................233.000.00--3.00-----------------------------------------------
.........................................................................................................AAATTGGCTGGGCACGGTGGCAA..........................................................................................................................232.000.002.00-------------------------------------------------
................................................................................................................................................................................GAGGTCGGGAGTTTGAGACCAGGCAA................................................262.000.00---------------------1.00------------1.00---------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACCT........................................................................................................................242.000.002.00-------------------------------------------------
...................................................................................................................................................................................GTCGGGAGTTTGAGACCTCTG..................................................212.000.00---------------2.00----------------------------------
.............................................................................................................................CTCACGCCTGTAATCCCAGAAA.......................................................................................................222.000.00-------2.00------------------------------------------
.................................................................................................................................................................ACGGATGGATCACCTGAGGTCGGGAGC..............................................................272.000.00--2.00-----------------------------------------------
............................................................................................................................................................................................TTGAGACCAGCCTGACCAACCGAG......................................242.000.00---2.00----------------------------------------------
...........................................................................................................ATTGGCTGGGCACGGTGGCGT..........................................................................................................................212.000.00-2.00------------------------------------------------
.........................................................................................................AAATTGGCTGGGCACGGTGGCACC.........................................................................................................................242.000.002.00-------------------------------------------------
.............................................................................................................................................................................................TGAGACCAGCCTGACCAACATGTATT...................................262.000.00-------------2.00------------------------------------
.............................................................................................................................................................................CCTGAGGTCGGGAGTTTGAGACTCTG...................................................262.000.00----------------------1.00------------------1.00--------
...........................................................................................................ATTGGCTGGGCACGGTGGCAAA.........................................................................................................................222.000.00--------------2.00-----------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGGAC..........................................................................................................................222.000.001.00---1.00---------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGGACT.........................................................................................................................231.000.001.00-------------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCTCATACC.....................................................................................................................271.000.00--1.00-----------------------------------------------
...........................................................................................................ATTGGCTGGGCACGGTGGCACC.........................................................................................................................221.000.00----------------------------------------1.00---------
.............AGAAATTTCTGGTTAAAT...........................................................................................................................................................................................................................181.000.00---------1.00----------------------------------------
...............................................................................................................................................................................TGAGGTCGGGAGTTTGAGACGTT....................................................231.000.00----------1.00---------------------------------------
....................................................................................................................................................................................TCGGGAGTTTGAGACCAGCCTCTT..............................................241.000.00-------1.00------------------------------------------
....................................................................................................................................................................................TCGGGAGTTTGAGACCAGCCTGACCAACGG........................................301.000.00--1.00-----------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGGCAT.........................................................................................................................231.000.001.00-------------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACGT........................................................................................................................241.000.001.00-------------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGGGGG............................................................................................................................201.000.00----1.00---------------------------------------------
......................................................................................................................................................................................GGGAGTTTGAGACCAGCCTGACCGGCA.........................................271.000.00-----------1.00--------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACCA........................................................................................................................241.000.00------------1.00-------------------------------------
........................................................................................................................................................................GATCACCTGAGGTCGGGAGG..............................................................201.000.00----------------1.00---------------------------------
..............................................................................................................................................................................CTGAGGTCGGGAGTTTGAGAAAAA....................................................241.000.00----------1.00---------------------------------------
..................................................................................................AAAAAAAAAATTGGCTGGGGATG.................................................................................................................................231.000.00-----------------1.00--------------------------------
..........................................................................................................AATTGGCTGGGCACGGGGG.............................................................................................................................191.000.001.00-------------------------------------------------
............................................................................................................................................................................ACCTGAGGTCGGGAGTTTGAG.........................................................2101.001.00----------------1.00---------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCATCT........................................................................................................................241.000.001.00-------------------------------------------------
.................................................................................................................................................................................AGGTCGGGAGTTTGATCC.......................................................181.000.00---------------------------1.00----------------------
............................................................................................................................................................................ACCTGAGGTCGGGAGTTTGAGACCAGCCGACC..............................................321.000.00--1.00-----------------------------------------------
...............................................................................................................................................................................TGAGGTCGGGAGTTTGAGACCAGCCTTGGC.............................................301.000.00---1.00----------------------------------------------
.................................................................................................................TGGGCACGGTGGCTCACGCCTGTAACTCC............................................................................................................291.000.00---1.00----------------------------------------------
.................................................................................................................TGGGCACGGTGGCTCACGCA.....................................................................................................................201.000.00-----------------------------------1.00--------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACTA........................................................................................................................241.000.001.00-------------------------------------------------
.................................................................................................................................................................................AGGTCGGGAGTTTGAGAAAA.....................................................201.000.00------------------------------------1.00-------------
...............................................................................................................GCTGGGCACGGTGGCTCACGCCTGTACTT..............................................................................................................291.000.00-1.00------------------------------------------------
......................................TTCTGAAACAAGGTGAGAAAAATC............................................................................................................................................................................................2411.001.00--------------------1.00-----------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGGACC.........................................................................................................................231.000.00----1.00---------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGGAA..........................................................................................................................221.000.00------------------------1.00-------------------------
...............................................................................................................................................................................TGAGGTCGGGAGTTTGAGACCAGCCGGC...............................................281.000.00---1.00----------------------------------------------
......................................................................................................................................................................................GGGAGTTTGAGACCAGCCTGTAA.............................................231.000.00--------------------------------------------1.00-----
..........................................................................................................AATTGGCTGGGCACGGTGGCCCC.........................................................................................................................231.000.001.00-------------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCCCCT........................................................................................................................241.000.00--1.00-----------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACAA........................................................................................................................241.000.001.00-------------------------------------------------
............................................................................................................................................................................ACCTGAGGTCGGGAGTTTGAGACCAG....................................................2601.001.00---------------------------------------------1.00----
.................................................................................................................................................................................AGGTCGGGAGTTTGAGACCAGCCGGCC..............................................271.000.00--1.00-----------------------------------------------
....................................................................................................................................................................................TCGGGAGTTTGAGACCAGCCTCAA..............................................241.000.00--------------------------------1.00-----------------
.............................................................................................................................................................................................TGAGACCAGCCTGACCGGCG.........................................201.000.00---------------------------------------1.00----------
......................................................................................................AAAAAATTGGCTGGGCACGGTGGCAC..........................................................................................................................261.000.00--1.00-----------------------------------------------
............................................................................................................TTGGCTGGGCACGGTGGCTCACGGCC....................................................................................................................261.000.00--1.00-----------------------------------------------
................................................................................GCTTTTTGTTTTTTACACC.......................................................................................................................................................191.000.00-------------------1.00------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCACTC........................................................................................................................241.000.001.00-------------------------------------------------
............................................................................................................................................................................ACCTGAGGTCGGGAGTTTGAGACCAGCCGAC...............................................311.000.00--1.00-----------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGGGCT.........................................................................................................................231.000.00----1.00---------------------------------------------
.........................................................................................................AAATTGGCTGGGCACGGGGTG............................................................................................................................211.000.00---1.00----------------------------------------------
...........................................................................................................ATTGGCTGGGCACGGTGGCACT.........................................................................................................................221.000.001.00-------------------------------------------------
.........................................................................................................................................................................ATCACCTGAGGTCGGGAGTTTGAGACC......................................................2701.001.00---------------------------------1.00----------------
.........................................................................................................AAATTGGCTGGGCACGGTGGCACT.........................................................................................................................241.000.001.00-------------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCAAT.........................................................................................................................231.000.001.00-------------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGTGGCAAAT........................................................................................................................241.000.001.00-------------------------------------------------
..................................................................................................................................................................................GGTCGGGAGTTTGAGTGC......................................................181.000.00----------------------------1.00---------------------
............................................................................................................TTGGCTGGGCACGGTGGCACAG........................................................................................................................221.000.00-1.00------------------------------------------------
..........................................................................................................AATTGGCTGGGCACGGCGT.............................................................................................................................191.000.00------1.00-------------------------------------------
...........................................................................................................ATTGGCTGGGCACGGTGGCAA..........................................................................................................................211.000.00------------1.00-------------------------------------
..........................................................................................................................................TCCCAGAACTTTGGGAGGCCAAGTAT......................................................................................261.000.00--------------------------------------1.00-----------
.................................................................................................................................................................................AGGTCGGGAGTTTGAGACCAGCCGGC...............................................261.000.00---1.00----------------------------------------------
.....................................................................................................................................................................................CGGGAGTTTGAGACCAGCCTGACCAACGC........................................291.000.00-------------------------1.00------------------------
.............AGAAATTTCTGGTTACAC...........................................................................................................................................................................................................................181.000.00---------1.00----------------------------------------
.............................................................................................................................................................CAAGACGGATGGATCACCTG.........................................................................2090.110.11------------------------------------------------0.11-
............................................................................................................................................................CCAAGACGGATGGATCACCTG.........................................................................2190.110.11-------------------------------------------------0.11

Antisense strand
GGAATGCCAAATAAGAAATTTCTGGTTAAACAAAATCCTTCTGAAACAAGGTGAGAAAAATCACTTAGTCTTAATGAGAGGCTTTTTGTTTTTTATAGAAAAAAAAAATTGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCAAGACGGATGGATCACCTGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGGAAAACCCCATCTCTACTAAAAATACAAAATTAGCTGGG
....................................................................(((..(((((((((.....))))))))))))...........((((((((......))))).))).....................................................................................................................
..............................................................63....................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189782GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR189785SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343334SRR040034(GSM532919)
G001N. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR189783SRR040016(GSM532901)
G645N. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................GGTCGGGAGTTTGAGACCAGCCTCAGG............................................. 274.000.00--2.002.00----------------------------------------------
.................................................................................................................................CGCCTGTAATCCCAGAAAGTC.................................................................................................... 212.000.00---2.00----------------------------------------------
.......CAAATAAGAAATTTCTACA................................................................................................................................................................................................................................ 191.000.00------------------------------1.00-------------------
...............................................................................................................GCTGGGCACGGTGGCTCACGCCTGTGACC.............................................................................................................. 291.000.00--1.00-----------------------------------------------
..............................................................................................................................................AGAACTTTGGGAGGCCACGTT....................................................................................... 211.000.00-------------------------------------1.00------------
...............................................................................................................GCTGGGCACGGTGGCTCACGCCTGTGGGG.............................................................................................................. 291.000.00--1.00-----------------------------------------------
......................................................................................................................................................................................................CCTGACCAACATGGAGAAC................................. 191.000.00-----------------1.00--------------------------------
.................................................................................................................................CGCCTGTAATCCCAGAACTTTCT.................................................................................................. 231.000.00-1.00------------------------------------------------
.................................................................................................................................CGCCTGTAATCCCAGAACTAACC.................................................................................................. 231.000.00--1.00-----------------------------------------------
......................................................................................................................................................................................................CCTGACCAACATGGAGTAA................................. 191.000.00----------------------------------------------1.00---
..................................................................................................................GGGCACGGTGGCTCACGCCTGTACAGG............................................................................................................. 271.000.00--1.00-----------------------------------------------
.................................................................................................................................CGCCTGTAATCCCAGAACTAGGC.................................................................................................. 231.000.00--1.00-----------------------------------------------
...........................................................................................................................................................................................TTTGAGACCAGCCTGACCAACATGGAAAC.................................. 291.000.00-----------1.00--------------------------------------
................................................................................................................................................................................GAGGTCGGGAGTTTGAGATCG..................................................... 211.000.00------1.00-------------------------------------------
..................................................................................................................................................................................GGTCGGGAGTTTGAGACCAGCCTGACAG............................................ 281.000.00---1.00----------------------------------------------
.................................................................................................................................CGCCTGTAATCCCAGAACTTACCC................................................................................................. 241.000.00---1.00----------------------------------------------
..............................................................................................ATAGAAAAAAAAAATTGGG......................................................................................................................................... 191.000.00---1.00----------------------------------------------
.............................................................................................................................................................................CCTGAGGTCGGGAGTTTGTAT........................................................ 211.000.00-----------------------------1.00--------------------
..............................................CAAGGTGAGAAAAATCTG.......................................................................................................................................................................................... 181.000.00--------------------------1.00-----------------------
.................................................................................................................................CGCCTGTAATCCCAGAAACCC.................................................................................................... 211.000.00--1.00-----------------------------------------------
.......................................................AAAAATCACTTAGTCTTC................................................................................................................................................................................. 181.000.00-----------------------------------------------1.00--
.................................................................................................................................................................................................ACCAGCCTGACCAACATGGAAAA.................................. 231.000.00-------------------------------------------1.00------
.................................................................................................................................CGCCTGTAATCCCAGAACTAGCA.................................................................................................. 231.000.00---1.00----------------------------------------------
..................................................................................................................................................................................GGTCGGGAGTTTGAGACCAGCCTGACCAACAGG....................................... 331.000.00---1.00----------------------------------------------
...................................................................................................................................................................................................CAGCCTGACCAACATGGAAACCTC............................... 241.000.00---1.00----------------------------------------------
...........................AAACAAAATCCTTCTGAAGG........................................................................................................................................................................................................... 201.000.00------1.00-------------------------------------------