ID: uc002cxo.1_intron_2_0_chr16_4812337_r
GENE: ZNF500(2)
chr16:4812287-4812623-


(1)
AGO2.ip 		(1)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(5)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(22)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
CCAGCTGAGCCACAGGCCACAGAGGGGCCCGCTGTTGTGGCCAGAGAGAGGTGAGTAGCACCCCTTTGGAGGAATGAGAAGTGGTGCAGGGGAGGGAGGTGAAGGTGACTGGGGTGTGGACTGTGGCCAGGGCAGAGGCCTGCCTGGATGCAGGGTGCACAGGCTCTCCAGCAAGGAGTGGATCTTGGGTGGGCAGCCGCCGGGCTGTTGGGGCCTTGGTGTGCAGGGGACGGCAGGGGCAGTACTGGGTGAGCTGTGTGACTGGTGGTGACTCTGCTCCTTCCCAGGCCCTCCAGCTCCCCGGCATCAGGAGATGGCGTCAGCCTCGCCCTTCCTT
.................................................................................................................................................................................(((.(((..((((.(((((((....)))))))...)))).))).))).(((((.(((((((.((.((((((.............)))))).)).)))))))..)))))....................................................
..............................................................................................................................................................................175.............................................................................................................287................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCAGT.................................................23131.005.00-7.00-1.003.001.003.001.001.001.00-1.00-2.00-----------1.00-----1.001.00--1.00-1.001.00-----1.00----1.00--1.001.00-------
......................................................................................................................................................................................................................................................................TGGTGGTGACTCTGCTCCTTCCCAGA.................................................2614.000.007.00-6.00--1.00-------------------------------------------------------
.......................................................................................................................................................................................................................................................................GGTGGTGACTCTGCTCCTTCCCAGA.................................................25111.002.006.00-------1.00-----------------1.00--------------1.00---1.00----1.00----------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCAGA.................................................2318.005.001.00---1.00-----------1.00-1.00-1.00-------------------------1.00-------1.00-1.00----
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCAG..................................................2215.005.00-2.00-1.00----1.00-------1.00--------------------------------------------
.......................................................................................................................................................................................................................................................................GGTGGTGACTCTGCTCCTTCCCAGAA................................................2612.002.001.00--------1.00---------------------------------------------------
.......................................................................................................................................................................................................................................................................GGTGGTGACTCTGCTCCTTCCCAG..................................................2412.002.00---------------2.00---------------------------------------------
....................................................................................................................................................................................................................................................................ACTGGTGGTGACTCTGAATA.........................................................202.000.00------------2.00------------------------------------------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCA...................................................2112.002.00---1.00-------------------------1.00-------------------------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCAGTA................................................2412.005.00-------1.00--1.00--------------------------------------------------
.......................................................................................................................................................................................................................................................................GGTGGTGACTCTGCTCCTTCCCAGAGA...............................................2712.002.00--------------2.00----------------------------------------------
...............................................................................................................................................................................................................................................................................................................................TCAGCCTCGCCCTTCCT.1711.001.00---------------------------------------------------1.00---------
...................................................................................................................................................................................GGATCTTGGGTGGGCAGAGC..........................................................................................................................................201.000.00----------------------1.00--------------------------------------
................................................................................................................................................................................................................................................................TGTGACTGGTGGTGACTCTGCTT..........................................................231.000.00----------------------------------------1.00--------------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCAGGCT...............................................251.000.00------------------------1.00------------------------------------
...........................................................................................GAGGGAGGTGAAGGTGACTGGGGTGTGGA.........................................................................................................................................................................................................................2911.001.00-------------------1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCAGAA................................................2411.005.00----------------------------1.00--------------------------------
.......................................................................................................................................................................................................................................................................GGTGGTGACTCTGCTCCTTCCCAGT.................................................2511.002.00-----------1.00-------------------------------------------------
.....................................................................................................AAGGTGACTGGGGTGAAGT.........................................................................................................................................................................................................................191.000.00-----------------------------------------------1.00-------------
...............................................................................................................................................................................................................................................................GTGTGACTGGTGGTGACTCTGCTCCTTCCCAGA.................................................331.000.00---------------------------------------------------------1.00---
...............................................................................................................GGGTGTGGACTGTGGCTCTG..............................................................................................................................................................................................................201.000.00-------1.00-----------------------------------------------------
.................................GTTGTGGCCAGAGAGAGGTGAGTAG.......................................................................................................................................................................................................................................................................................2511.001.00---------------------------1.00---------------------------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCGGT.................................................2311.001.00-----1.00-------------------------------------------------------
......................................................................................................................................................................................................................................................................TGGTGGTGACTCTGCTCCTTCCCAGAA................................................271.000.00---------------------------------------1.00---------------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCATT.................................................2311.002.00------------------------------------------------1.00------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCCTG..................................................2211.001.00---------------------------------1.00---------------------------
...........................................................................................................ACTGGGGTGTGGACTGTGGCCAG...............................................................................................................................................................................................................2311.001.00------------------------------------------1.00------------------
..............................................................................................................................................................................................................................................................TGTGTGACTGGTGGTGACTCTG.............................................................2211.001.00-----1.00-------------------------------------------------------
.......................................................................................................................................................................................................................................................................GGTGGTGACTCTGCTCCTTCCCA...................................................2311.001.00----------------------------------1.00--------------------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCTTCCC....................................................2011.001.00------------------------------1.00------------------------------
.............................................................................................................................................................................AGGAGTGGATCTTGGGGC..................................................................................................................................................181.000.00------------------------------------1.00------------------------
.............................................................................................................................................................................................................................................................................................................CGGCATCAGGAGATG.....................1511.001.00-------------------------------------------1.00-----------------
...............................................................................................................GGGTGTGGACTGTGGCCAGGGCAGAGGC......................................................................................................................................................................................................2811.001.00----------1.00--------------------------------------------------
................................................AGGTGAGTAGCACCCCGGGA.............................................................................................................................................................................................................................................................................201.000.00---1.00---------------------------------------------------------
.......................................................................................................................................................................................................................................................GGTGAGCTGTGTGACT..........................................................................1680.250.25------------------0.12-----------------------------------------0.12
...............................................................................AGTGGTGCAGGGGAGG..................................................................................................................................................................................................................................................1660.170.17-----------------0.17-------------------------------------------
.........................................................................................................................................................................................................................................................................TGGTGACTCTGCTCCT........................................................1660.170.17----------------------------------------------------------0.17--
.................................................................................................................................................................................................................................................................................................................................AGCCTCGCCCTTCCT.1570.140.14-----------------------------------------------------------0.14-

Antisense strand
CCAGCTGAGCCACAGGCCACAGAGGGGCCCGCTGTTGTGGCCAGAGAGAGGTGAGTAGCACCCCTTTGGAGGAATGAGAAGTGGTGCAGGGGAGGGAGGTGAAGGTGACTGGGGTGTGGACTGTGGCCAGGGCAGAGGCCTGCCTGGATGCAGGGTGCACAGGCTCTCCAGCAAGGAGTGGATCTTGGGTGGGCAGCCGCCGGGCTGTTGGGGCCTTGGTGTGCAGGGGACGGCAGGGGCAGTACTGGGTGAGCTGTGTGACTGGTGGTGACTCTGCTCCTTCCCAGGCCCTCCAGCTCCCCGGCATCAGGAGATGGCGTCAGCCTCGCCCTTCCTT
.................................................................................................................................................................................(((.(((..((((.(((((((....)))))))...)))).))).))).(((((.(((((((.((.((((((.............)))))).)).)))))))..)))))....................................................
..............................................................................................................................................................................175.............................................................................................................287................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.............................................................................................................................................................CACAGGCTCTCCAGCTCGA................................................................................................................................................................. 191.000.00-----------------------1.00-------------------------------------
...............................................................................................................................................................................................................................................................................................GCCCTCCAGCTCCCCGAG................................ 181.000.00-------------------------------------------------------1.00-----
.................................................................................................................................................................................................................................................GTACTGGGTGAGCTGTC............................................................................... 171.000.00-----------------1.00-------------------------------------------