ID: uc002cws.3_intron_0_0_chr16_4526489_f.3p
GENE: (1)
chr16:4545947-4546196+


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(15)
CELL-LINE 		(1)
OTHER 		(1)
RRP40.ip 		(1)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGGCCTGCCCTGTTAGTCATCAAAAATAGATCTCACCAGGGAACAATCTTCTCAGGTTGTTGTGTAATTTGAGTGAGCCAAGGTGAGTGTTTTAGGGACAAGCAGCATCAACTTCGGAATCTTCAACTGGGCCTGAGCACTTATTTCTCAGAAATAATAGAATCTTGCTCACTTTTCTTTCTTTTTTTTTTTTTTTTTAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGATCAGTCTAGC
..............................................................................................(((.((((..((.(((..(((((.........)))))..)))))..(((((((...)))))))......)))))))................................................................................
...........................................................................................92..........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785SRR343335GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTAG......................................................29227.000.508.0015.00-1.003.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCAG......................................................2625.000.008.006.003.005.002.00--1.00-----------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTAG.....................................................3021.000.0013.007.00--1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCAG.......................................................2519.000.008.001.002.004.004.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTAG........................................................2718.000.0011.005.00-2.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCAG.....................................................2718.000.0011.00--5.001.001.00-------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTAG....................................................3117.000.005.009.00-3.00---------------------
................................................................................................GACAAGCAGCATCAAGG.........................................................................................................................................1717.000.00------17.00------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTAG.......................................................28216.001.506.009.00-1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTAG...................................................32111.001.006.004.00-1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTAG.........................................................26211.000.505.003.00-1.002.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTCAG........................................................2410.000.002.002.00-2.004.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTCAG...................................................2910.000.006.001.001.001.001.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTAG..........................................................2510.000.004.002.00--2.001.00-1.00-----------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTAAAG...................................................297.000.002.001.00-1.002.00--1.00-----------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTCAG.........................................................236.000.00--1.001.003.00--1.00-----------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTCTTG...................................................296.000.002.003.00-1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCTTG....................................................286.000.00-2.001.00-1.00--2.00-----------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCCG.................................................295.000.003.001.00-1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTCTTG.......................................................255.000.001.00-2.001.00-1.00-------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTAG..................................................2984.254.251.751.75-0.380.38--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTAT........................................................274.000.001.003.00-----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTAG....................................................284.000.00-1.003.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTG.........................................................264.000.001.00-2.001.00---------------------
.............................................................................................................................................................................TTTCTTTCTTTTTTTTTTTTTTTTTACCC................................................294.000.00--4.00----------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCTCG................................................304.000.003.00-1.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTAG...........................................................2434.000.331.002.00--1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTAG.........................................................234.000.001.001.001.001.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTAAAG.......................................................254.000.001.00--1.002.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTGG.....................................................274.000.00--3.00--1.00-------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTTAG..................................................3314.004.003.00--1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTG......................................................294.000.00-2.00-1.001.00--------------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGGAGTGG.........................................233.000.00--------3.00----------------
........................................................................................................................................................................................................ATGGAGTCTCGCTCTGTTGCCCAGGCGGAG....................303.000.00--3.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTTG...................................................3213.001.001.001.00--1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTTCAG.................................................313.000.001.00-1.00-1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCTTG.....................................................273.000.001.002.00-----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTAAAG.................................................313.000.001.001.00-1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTCAG....................................................313.000.00---1.001.00--1.00-----------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTG..........................................................2523.000.503.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCCAG.....................................................273.000.00--2.001.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTCAG..................................................303.000.001.00-1.001.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCCAG....................................................282.000.00--1.001.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTGGAG....................................................282.000.00--1.00--1.00-------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTCCAG....................................................302.000.00-1.00-1.00---------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTAAAG........................................................262.000.00----2.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTTC...................................................292.000.00--1.00-1.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTTTG..................................................3312.001.001.00--1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTAAG.....................................................272.000.00---2.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTAAG...................................................292.000.00--1.001.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTAG............................................................232.000.001.001.00-----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTAAAG........................................................242.000.001.00---1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTCGAG..................................................302.000.00--2.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTCG....................................................282.000.00-1.001.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTAG.............................................................222.000.00---2.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTG.......................................................2822.000.502.00------------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTAT....................................................312.000.001.001.00-----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCGAG......................................................262.000.00--1.00--1.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTGAGG.....................................................272.000.00--2.00----------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTCAG.....................................................282.000.001.00--1.00---------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCTCT................................................302.000.001.00--1.00---------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTG......................................................282.000.00-1.00-1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTCAG...........................................................212.000.00---1.001.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTG....................................................3112.001.002.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTAAAG......................................................262.000.001.00---1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTAAAG.....................................................272.000.00-2.00-----------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTGG......................................................282.000.00--2.00----------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTAAAG.....................................................282.000.00---2.00---------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTACAAG...............................................312.000.001.00--1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCGAG.....................................................272.000.00--2.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTCCAG...................................................292.000.00-1.00-1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTCG...................................................292.000.00---2.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTGTTC........................................................242.000.00-----2.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTCCAG.......................................................252.000.00---2.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTG........................................................2722.001.50---2.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCAAG....................................................282.000.00----2.00--------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTTTTTTG.................................................332.000.001.001.00-----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTTTA..................................................3312.001.002.00------------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTG...........................................................242.000.00-2.00-----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTT.........................................................2621.501.50-0.50--0.50--0.50-----------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTCTTG..........................................................221.000.00--1.00----------------------
....................................................................................................................................................................................................................TCTGTTGCCCAGGCTGGAGTGCAGTGGACAC.......311.000.00-----1.00-------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTTGGG...................................................301.000.00-------1.00-----------------
...............................................................................................................................................................................................TTTTTTTAGATGGAGTCTCG.......................................2001.001.00--------------------1.00----
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCCA.......................................................251.000.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTGCG.....................................................271.000.00--1.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTGG.....................................................301.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTCTTC.......................................................251.000.00--1.00----------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTA.........................................................251.000.00-----1.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTGAT.....................................................271.000.00--1.00----------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTAAAG.....................................................291.000.00-1.00-----------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCTCA................................................301.000.00-1.00-----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTCATC..................................................301.000.00--1.00----------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTATTG......................................................251.000.00---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTTTAG.................................................3411.001.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTAGAG..................................................301.000.00-------1.00-----------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTCGAA.......................................................241.000.00---1.00---------------------
................................................................................................................................................................................................................................GCTGGAGTGCAGTGGATC........1801.001.00----------1.00--------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTAGG.....................................................271.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTAGG....................................................281.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTATG.......................................................251.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTTAAAAG...............................................331.000.00---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTCTAG.........................................................2631.000.33---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTGGAG...................................................291.000.00-----1.00-------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGAAAAG.............................................261.000.00-------1.00-----------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTCAG.........................................................261.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCTTG......................................................261.000.00-1.00-----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTT....................................................3111.001.00-1.00-----------------------
.........................................................................................................................................................................................................................TGCCCAGGCTGGAGTGCAGTGGATGCT......271.000.00--1.00----------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTAAAG....................................................291.000.001.00------------------------
.........................................................................................................................................................................................................TGGAGTCTCGCTCTGTTGCCCAGGGCGG.....................281.000.00-----1.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTCTCG.................................................311.000.00---1.00---------------------
................................................................................................................................................................................................................................GCTGGAGTGCAGTGGATTGGT.....211.000.00--------------1.00----------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTCTGG.......................................................251.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCAA......................................................261.000.00----1.00--------------------
.............................................................................................................................................................................TTTCTTTCTTTTTTTTTTTTTTTTTAGCCT...............................................301.000.00--1.00----------------------
.............................................................................................................................ACTGGGCCTGAGCACTTC...........................................................................................................181.000.00--1.00----------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGAAGGG.............................................261.000.00-----1.00-------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTGG....................................................311.000.00---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTAA.....................................................301.000.00-1.00-----------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCGTG................................................301.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCCCC.....................................................271.000.00--1.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTAAT.......................................................281.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTGTG.........................................................231.000.00---1.00---------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTACATG...............................................321.000.00-1.00-----------------------
..............................................................................................................................CTGGGCCTGAGCACTGCG..........................................................................................................181.000.00-----------1.00-------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTA......................................................291.000.001.00------------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGAAAGC.............................................281.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTTCT..................................................301.000.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTAT.....................................................271.000.00-----1.00-------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTCTTG.....................................................291.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCCGG....................................................281.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCAGC.....................................................271.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTCCG...................................................291.000.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTGGG.........................................................231.000.00--1.00----------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGGCTG..............................................271.000.00--1.00----------------------
........................................................................................................................................................................................................ATGGAGTCTCGCTCTGTTGCCCAGGACGG.....................291.000.00-----1.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTAGG...................................................291.000.00---1.00---------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTAAG.....................................................281.000.00---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTTAT..................................................331.000.00-1.00-----------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGCCG...............................................261.000.00--1.00----------------------
.............................................................................................................................................................................TTTCTTTCTTTTTTTTTTTTTTTTTAGGCGG..............................................311.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTAT.......................................................251.000.00-------1.00-----------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTGCGG.....................................................281.000.00----1.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTCG........................................................271.000.00-1.00-----------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTTTCTTG.................................................321.000.00----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTATTT....................................................291.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTGCTG.....................................................271.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCTTC.....................................................271.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTAAAT..................................................301.000.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCAT.....................................................271.000.001.00------------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGAATTT.............................................261.000.00----1.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTAA........................................................271.000.00-1.00-----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCCGG.....................................................271.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCA......................................................261.000.001.00------------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGCCGT..............................................261.000.00--1.00----------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTCCAG.................................................301.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTCTG.........................................................231.000.00----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTCAAG...................................................301.000.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTGGGG.................................................311.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTCTGG...................................................291.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTTCTTG................................................321.000.00---1.00---------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTCCAG....................................................291.000.001.00------------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTCCAG.......................................................261.000.00----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTCAG.........................................................241.000.001.00------------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGGCTC..............................................271.000.00-----1.00-------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTGGT.....................................................291.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTAAG......................................................261.000.001.00------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGCTGC...........................................211.000.00------------1.00------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTCTTG.................................................311.000.00---1.00---------------------
.........................................................................TGAGCCAAGGTGAGTGTTTAGGG..........................................................................................................................................................231.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCTGG....................................................281.000.00--1.00----------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTGGGA...................................................311.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTCTAG........................................................241.000.00---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTT.....................................................3011.001.00-1.00-----------------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAGTGGATTATC.....231.000.00--1.00----------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGAGAAC.............................................261.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTATG..................................................301.000.001.00------------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTGT...................................................3211.001.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTACAG.....................................................271.000.00-------1.00-----------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTCAG.......................................................261.000.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTCGAG.......................................................251.000.00--1.00----------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTCATG.................................................301.000.00-------1.00-----------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGGGG...............................................261.000.00--1.00----------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTAG.....................................................291.000.001.00------------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTTTTTG................................................3511.001.001.00------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTAGATGCCAA...........................................241.000.00-----1.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTATG...................................................291.000.001.00------------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTAAG......................................................2921.001.50---1.00---------------------
........................................................................................................................................................................................................ATGGAGTCTCGCTCTGTTGCCCAGGCCGC.....................291.000.00--1.00----------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTACAAA...............................................311.000.001.00------------------------
............................................................................................................................................................................................................AGTCTCGCTCTGTTGCCCAGGCTTAT....................261.000.00-----------------------1.00-
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTTTTAG................................................3511.001.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTCAA.....................................................271.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTCTG...................................................291.000.00----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTCCCG........................................................251.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTAAAG.........................................................231.000.00---1.00---------------------
........................................................................................................................................................................................................ATGGAGTCTCGCTCTGTTGCCCAGGCCGGC....................301.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTCCAG........................................................241.000.00--1.00----------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTCGAG...................................................301.000.00-------1.00-----------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTG................................................................191.000.00---1.00---------------------
................................................................................................GACAAGCAGCATCAAGGA........................................................................................................................................181.000.00------1.00------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTCAG........................................................251.000.00---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTAT.....................................................301.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTAGAG.....................................................271.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTCGAG..........................................................221.000.00-----1.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCG........................................................241.000.00----1.00--------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTTTTTCCC................................................341.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTAAAA..................................................301.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTAACC..................................................301.000.00--1.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTGG........................................................271.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTCGAG.................................................311.000.00-----1.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTCGG..................................................301.000.00--1.00----------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTAACG..............................................................201.000.00------------------1.00------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTTTTAAATG...............................................351.000.00-1.00-----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCTGG.....................................................271.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTGTAC.....................................................271.000.00-----1.00-------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTTTCTG.................................................311.000.00-1.00-----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCCAG......................................................261.000.00---1.00---------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTACAG.....................................................261.000.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTCAT....................................................281.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCTAG......................................................261.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTGGTT..........................................................221.000.00--1.00----------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTG.........................................................241.000.001.00------------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTTTTG...................................................311.000.00-1.00-----------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTTTTAAAG................................................341.000.00-1.00-----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTCAG.....................................................3021.000.50----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTCAAG....................................................291.000.00----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTTCTTG..................................................311.000.00----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTAAAG......................................................271.000.00-1.00-----------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTTTTCCAG................................................331.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTCGCC.......................................................251.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTAGG.......................................................251.000.001.00------------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTTTCAG..................................................321.000.001.00------------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTCG........................................................251.000.00---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTAA......................................................2921.000.501.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTCG.........................................................231.000.00----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTTTAAAG.................................................321.000.00----1.00--------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGCCGG..............................................261.000.00-----1.00-------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTTTTTG..................................................311.000.00-1.00-----------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGCCTG..............................................261.000.00--1.00----------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTCTAG................................................311.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCAT......................................................261.000.00-1.00-----------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTCCG.................................................301.000.001.00------------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTAA.......................................................2821.001.50-1.00-----------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGGACT..............................................271.000.00--1.00----------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTAAA........................................................251.000.00---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTCAG..................................................3311.001.00---1.00---------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCCCC................................................301.000.00--1.00----------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCTAG................................................301.000.00----1.00--------------------
.........................................................................................................................................................................................................TGGAGTCTCGCTCTGTTGCCCAGGCGGAG....................291.000.00--1.00----------------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAGTGGATAAA......211.000.00---------1.00---------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTCCAG........................................................251.000.00----1.00--------------------
...........................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGGATCGTCG....271.000.00----------------1.00--------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGAACCA.............................................281.000.00-------1.00-----------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTCCAG..................................................301.000.00--1.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTACT....................................................311.000.001.00------------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGAAAGG.............................................281.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTGGC............................................................201.000.00--1.00----------------------
.............................................................................................................................................................................................................................CAGGCTGGAGTGCAGTGGATCGTCG....251.000.00---------------------1.00---
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTGG.......................................................271.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCAAA.....................................................271.000.00----1.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTAATT......................................................291.000.00----1.00--------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTAAAT......................................................271.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTAAAG....................................................281.000.00----1.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTTTTTA....................................................3111.001.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCTTT......................................................261.000.00-----1.00-------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTCCAG................................................311.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTGGA.....................................................271.000.00--1.00----------------------
........................................................................................................................................................................................................ATGGAGTCTCGCTCTGTTGCCCAGGCCGA.....................291.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTCC..........................................................221.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTGGTA....................................................281.000.00-----1.00-------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTCCAG............................................................211.000.00---1.00---------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTAAG......................................................271.000.00----1.00--------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTCTG....................................................281.000.001.00------------------------
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTTTTTTTTAAAG...................................................301.000.00-------1.00-----------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTCCCC......................................................261.000.00--1.00----------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTCTAG.....................................................3021.001.50---1.00---------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTCTTG.......................................................2821.000.50---1.00---------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCGGG................................................301.000.00--1.00----------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTTTTAAT...................................................311.000.00---1.00---------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTGGC.......................................................251.000.00--1.00----------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTATG....................................................281.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTTTTCAT...................................................291.000.00----1.00--------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTTTCCAG.....................................................291.000.001.00------------------------
..........................................................................................................................................................................ACTTTTCTTTCTTTTTTTTTTTTCTG......................................................261.000.00----1.00--------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTT...........................................................2420.500.500.50------------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTTTTTTT........................................................2720.500.500.50------------------------
.......................................................................................................................................................................CTCACTTTTCTTTCTTTTTTTT.............................................................2230.330.33--0.33----------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTAGG.................................................3080.124.25---0.12---------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTTCCAG.......................................................2790.110.110.11------------------------
........................................................................................................................................................................TCACTTTTCTTTCTTTTTTTTTT...........................................................2390.110.11--0.11----------------------

Antisense strand
TGGCCTGCCCTGTTAGTCATCAAAAATAGATCTCACCAGGGAACAATCTTCTCAGGTTGTTGTGTAATTTGAGTGAGCCAAGGTGAGTGTTTTAGGGACAAGCAGCATCAACTTCGGAATCTTCAACTGGGCCTGAGCACTTATTTCTCAGAAATAATAGAATCTTGCTCACTTTTCTTTCTTTTTTTTTTTTTTTTTAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGATCAGTCTAGC
..............................................................................................(((.((((..((.(((..(((((.........)))))..)))))..(((((((...)))))))......)))))))................................................................................
...........................................................................................92..........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785SRR343335GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)
.................................................TCTCAGGTTGTTGTGTCAT...................................................................................................................................................................................... 191.000.00------------------------1.00
.........................................................................................................................................................................CACTTTTCTTTCTTTTTTTGTTT.......................................................... 231.000.00----------------------1.00--
...............................................................................................................................................................................................................CTCGCTCTGTTGCCCAC.......................... 171.000.00-------------1.00-----------
................................................................................................................................................................................CTTTCTTTTTTTTTTTTTTTTTAGGATC.............................................. 281.000.00-----------------1.00-------
.......................................................................AGTGAGCCAAGGTGAGT.................................................................................................................................................................. 171.000.00---------------1.00---------
............................................................................................................................................................................................TTTTTTTTTTAGATGGAGTCTCGCTCTGTTCAG............................. 331.000.00---1.00---------------------
.......................................................GTTGTTGTGTAATTTGACAG............................................................................................................................................................................... 201.000.00-------------------1.00-----