ID: uc002cwe.2_intron_16_0_chr16_4412162_r
GENE: (11)
chr16:4412112-4412662-


(1)
AGO1.ip OTHER.mut
(5)
AGO2.ip
(2)
AGO3.ip
(1)
B-CELL
(2)
BRAIN
(18)
BREAST
(25)
CELL-LINE
(9)
CERVIX
(4)
HEART
(2)
HELA
(1)
KIDNEY
(3)
LIVER
(3)
OTHER
(37)
SKIN
(1)
XRN.ip

Sense strand
CAGTGGCATCGGGACCAGCCCCAGTTTGAGGTCGCTGCAGAGCCTGCTGGGTAAGGAGGCAGGACGGGGAGCTCACCCCTACCGCAGGAGCCCTGTCTGCCCCACTCCCCGTCATCCTCCTGTGTACCCTACTGCTGAGCACAGGCCTCATGCAGGGCACCCCCCTCACCCAGACTCACTGGCAGGGTCATTTGTCCTGGGGGCTGGGGTGTGGTGGCTGAGTCTCACCTGCAAAATAGGAGGGCGGCTGGGGCCACCAGCTTCTGAGCAGCCAAAGCCCTGGGCTCCACCAAGATTCCCCGAGCCACCATGGAACAGGGTATATCATTCCAGACATTATTCCTGGGCGAGTTGCATCCACTGGATTAGCAAAGGCCTGGGCCTAGGTCCATGCTGTACATCCACCTGGGGTGAGGGGAGTGGGCAGCCGGGACTCAAAGAGTGCAGGGCGGGCGGGGACGGCATCCTCACACGTGGTTCCATGTCCCTGCCACCTGCCAGGCCCCAGTTCCAAGTTCCGCCATGCTCAGGGCACTGTCCTGCACCGAGAC
..................................................................................................................................................................................................................................................................................................................................................................................................................((((...)))).(((...(((....)))...))).......(((((...((((((((((....((........)).....)))))))))).))))).....................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................402................................................................................................501................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR040016(GSM532901)
G645N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532886(GSM532886)
G850T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGT.................................................22148.0010.001.006.002.002.00---4.00--3.00-----------1.00-1.00---1.001.00---1.00-1.001.001.00---1.001.00-----1.00-1.00-----1.00---1.00---1.00-1.00-1.00-1.001.00----1.00--1.00--1.001.00--1.00----1.001.00--1.001.00--1.00-1.00--------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGA.................................................22126.0010.0012.00----2.00-------1.00-1.001.00--1.00-------1.00-----------1.00------1.00----1.00----------------------1.00-------------1.00--------1.00-----1.00------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAG..................................................21110.0010.003.00-1.001.00-1.00-----1.00--------------------------------1.00--------1.00-1.00------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGTA................................................2315.0010.001.00-2.00-----------1.00---------------------------------------------------------------1.00-------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCATT.................................................2214.001.001.00----------1.00----------1.00--------------------------------------1.00------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGTT................................................2314.0010.00-------------1.00------------------1.00--------------------------1.00---------------------------------1.00----------------
..........................TGAGGTCGCTGCAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1713.003.00---------3.00----------------------------------------------------------------------------------------------------
......CATCGGGACCAGCCCCAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003.00------------3.00-------------------------------------------------------------------------------------------------
..........................TGAGGTCGCTGCAGAGCCTGCTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................263.000.00------3.00-------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATGTCCCTGCCACCTGCCATA.................................................253.000.003.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATGTCCCTGCCACCTGCCAGTT................................................2613.002.00-3.00------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGC.................................................2213.0010.00------------------1.00------------------------1.00-------------------------------1.00----------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATGTCCCTGCCACCTGCCAGT.................................................2512.002.001.00--1.00----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGTAA...............................................2412.0010.00-------------------1.00--------------------------------------------------------------------------------1.00---------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAA..................................................2112.001.002.00-------------------------------------------------------------------------------------------------------------
........................................................................................................................................................CAGGGCACCCCCCTCGCGG............................................................................................................................................................................................................................................................................................................................................................................................192.000.00----------------------------------------------------1.00-1.00-------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGAAA...............................................2412.0010.00---------------------------------------------------------1.00----------------------------------------1.00-----------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCATTA................................................2312.001.002.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATGTCCCTGCCACCTGCCAG..................................................2412.002.001.00-1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAAAT................................................2312.001.002.00-------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGAA................................................2312.0010.00------------------------------1.00-------------------------------------------------1.00-----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................AGCAAAGGCCTGGGCCAGAC....................................................................................................................................................................202.000.00------2.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGC.....................................................1811.001.00--------------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCTGGGCCTAAT....................................................................................................................................................................171.000.00-------------------------------1.00------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGAGA...............................................2411.0010.00-------------------------------------------------------------------------------------1.00------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGTAG...............................................2411.0010.00---1.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGTCCCTGCCACCTGCCAGT.................................................241.000.00----------------------------------------------------------------------------------------------1.00---------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTGGTTCCATGTTCT...............................................................181.000.00-----------------------------------------------1.00--------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATGTCCCTGCCACCTGCCATTT................................................261.000.00------------------------------------------------------------------------------------------------------1.00-------
..........................TGAGGTCGCTGCAGAGCCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------------------------------------------------1.00-----------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGTC................................................2311.0010.00---------------------------------------------1.00----------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGGGCGGGCGGGGACGGCA.......................................................................................2411.001.00-----1.00--------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GGGGTGTGGTGGCTGGGGT.......................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------------1.00--------------------------------------------
...................................................................................................................................................................................................................................CCTGCAAAATAGGAGGGC..................................................................................................................................................................................................................................................................................................................1811.001.00-----1.00--------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGGGCGGGCGGGGAT...........................................................................................201.000.00----------------------------------------------------------1.00---------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCCTGCCACCTGCCAGT.................................................231.000.001.00-------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGGAGTGGGCAGAATC........................................................................................................................191.000.00------------------------------------------------------------------------------------------1.00-------------------
.......................GTTTGAGGTCGCTGCAGAGCCTGCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00---------------1.00----------------------------------------------------------------------------------------------
.....................CAGTTTGAGGTCGCTGCAGAGCCTGCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00--------------1.00-----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................GCTTCTGAGCAGCCAGGA..................................................................................................................................................................................................................................................................................181.000.00---------------------1.00----------------------------------------------------------------------------------------
....................................................AAGGAGGCAGGACGGTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------1.00--------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................TAGGAGGGCGGCTGGACGC........................................................................................................................................................................................................................................................................................................191.000.00------------------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTG......................................................1711.001.00-------------------------------------------------------------------1.00------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCTGCCACCTGCCAGAAG...............................................231.000.00-------------------------------------------------------------------------1.00------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCTGCCACCTGCCAGT.................................................211.000.00----------------------------------------1.00---------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATGTCCCTGCCACCTGCCACT.................................................251.000.00---------------------------------------------------------------------------------------1.00----------------------
..............................................................................................................................................................................................................................................GGAGGGCGGCTGGGGCCTA......................................................................................................................................................................................................................................................................................................191.000.00-------------------------1.00------------------------------------------------------------------------------------
......................................................GGAGGCAGGACGGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---------------------------------------------------------------------------------1.00----------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGTCCCTGCCACCTGCCAGG.................................................2411.001.00--------------------------------------1.00-----------------------------------------------------------------------
......................................................................................................CACTCCCCGTCATCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00-----------1.00--------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCA...................................................2011.001.00------------------------1.00-------------------------------------------------------------------------------------
......................................................................................................................................................................................................GGGGGCTGGGGTGTGGTT...............................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------------------------------------------------------------1.00-------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCCTGCCACCTGCCAGTTTT..............................................2511.0010.00----------------------------------1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCCTGCCACCTGCCAGTAA...............................................251.000.00---------------------------------------------------------------------1.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCCGCCATGCTCAGGGCACTGT.............2711.001.00--------------------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATGTCCCTGCCACCTGCCAGA.................................................2511.002.001.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................GCTTCTGAGCAGCCAGTA..................................................................................................................................................................................................................................................................................181.000.00---------------------1.00----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................CCAAGATTCCCCGAGCC.....................................................................................................................................................................................................................................................1711.001.00----------------1.00---------------------------------------------------------------------------------------------
.........................................................................CACCCCTACCGCAGGAGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------------------------1.00------------------------------------------------------------
......................AGTTTGAGGTCGCTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---------------------------------------------------------------1.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGGGCGGGGACGGCGA......................................................................................1930.330.33---------------------------------------------------------------------------------------------------------0.33----
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGGGCGGGGACGGC........................................................................................1730.330.33--------------------------------------------------------------------------------------------------------0.33-----
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGGGCGGGGACGG.........................................................................................1670.290.29-----------------------------------------------------------------------------------------------------------0.14-0.14
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGGGCGGGGACGGT........................................................................................1770.140.29------------------------------------------------------------------------------------------------------------0.14-
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGGGCGGGGACGGTG.......................................................................................1870.140.29--------------------------------------------------------------------------------------------------------0.14-----

Antisense strand
CAGTGGCATCGGGACCAGCCCCAGTTTGAGGTCGCTGCAGAGCCTGCTGGGTAAGGAGGCAGGACGGGGAGCTCACCCCTACCGCAGGAGCCCTGTCTGCCCCACTCCCCGTCATCCTCCTGTGTACCCTACTGCTGAGCACAGGCCTCATGCAGGGCACCCCCCTCACCCAGACTCACTGGCAGGGTCATTTGTCCTGGGGGCTGGGGTGTGGTGGCTGAGTCTCACCTGCAAAATAGGAGGGCGGCTGGGGCCACCAGCTTCTGAGCAGCCAAAGCCCTGGGCTCCACCAAGATTCCCCGAGCCACCATGGAACAGGGTATATCATTCCAGACATTATTCCTGGGCGAGTTGCATCCACTGGATTAGCAAAGGCCTGGGCCTAGGTCCATGCTGTACATCCACCTGGGGTGAGGGGAGTGGGCAGCCGGGACTCAAAGAGTGCAGGGCGGGCGGGGACGGCATCCTCACACGTGGTTCCATGTCCCTGCCACCTGCCAGGCCCCAGTTCCAAGTTCCGCCATGCTCAGGGCACTGTCCTGCACCGAGAC
..................................................................................................................................................................................................................................................................................................................................................................................................................((((...)))).(((...(((....)))...))).......(((((...((((((((((....((........)).....)))))))))).))))).....................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................402................................................................................................501................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR040016(GSM532901)
G645N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532886(GSM532886)
G850T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
...................................................................................................................................................................................................................................................................................................................................ATCATTCCAGACATTTGCA................................................................................................................................................................................................................. 1912.000.00----5.00---4.00--------2.00-----------------------------------------------------------------------1.00--------------------
......................................................................................................................................................................................................................................................GCTGGGGCCACCAGCTTAAGG............................................................................................................................................................................................................................................................................................ 211.000.00--------------------1.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................CCCCCCTCACCCAGACACAA.................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00------------------------------------------------------------------------1.00-------------------------------------
...................................................................................GCAGGAGCCCTGTCTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00-----------------------------------------------------------------------------1.00--------------------------------
.........................................................GGCAGGACGGGGAGCCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00-----------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCCCCGCCCGCCC......................................................................................... 1670.140.14----------------------------------------------------------------------------------------------------------0.14---