| (2) BRAIN | (1) BREAST | (9) CELL-LINE | (3) HEART | (2) LIVER | (1) OTHER |
| GGAATGTCAGTGACTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAGGTTAGTTTTTTTGTTTTTTTTTTCCTACTTCTAAAACTTTCTATTAATTCTGCAGTAGAGCACGTGAAATAATAAGCAGCCTCCAGGTCTGAGGCAAACAACTTGGAATGACCTTCGATTTGGTTTTCACGATTTTAATATTTAGTCTAAAGTTAGTAGCATTCTGCATTTTTAACATCCTTGCTTTTTGACATATGACG ............................................................(((((((.......(((((........................))))).......)))))))................................................................................................................................ ..................................................51......................................................................123............................................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR029128(GSM416757) H520. (cell line) | SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189786 | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................TAGTTTTTTTGTTTTTTTTTTACGG............................................................................................................................................................................. | 25 | 4.00 | 0.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................AGTTTTTTTGTTTTTTTTTTACGG............................................................................................................................................................................. | 24 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................AGGTTAGTTTTTTTGTTTTTTTTCTCC............................................................................................................................................................................... | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TTAGTTTTTTTGTTTTTTTACGG................................................................................................................................................................................ | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................TTTTGTTTTTTTTTTCCTACTTCTGTG..................................................................................................................................................................... | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .GAATGTCAGTGACTTGGCGCAGA.................................................................................................................................................................................................................................. | 23 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................TTTTTTTGTTTTTTTTTTCGAC............................................................................................................................................................................. | 22 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................TTTGTTTTTTTTTTCGGGT............................................................................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................TTTTTTTGTTTTTTTTTTCCGGGC........................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................AGTTTTTTTGTTTTTTTTGGCT............................................................................................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TTAGTTTTTTTGTTTTCAA.................................................................................................................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................AGTTTTTTTGTTTTTTTTTCCC............................................................................................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......TCAGTGACTTGGCGCAGACTGCC............................................................................................................................................................................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................TTTTTTTGTTTTTTTTTTCCGGAG........................................................................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................TTTTTTGTTTTTTTTTTCCTTTTG.......................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ......................GACTGTCAAAACCTTTGATAACC............................................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................GCAGACTGTCAAAACC....................................................................................................................................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................AGTTTTTTTGTTTTTTTTTATGA.............................................................................................................................................................................. | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..........TGACTTGGCGCAGACTGTCA............................................................................................................................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................................................TTTTTTGTTTTTTTTTTCCTAG............................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................TTTTTGTTTTTTTTTTCCTTGCG.......................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................TTTTTGTTTTTTTTTTCGGC............................................................................................................................................................................. | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................GTTTTTTTGTTTTTTTTTTCTCGT............................................................................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................TTTTTTTGTTTTTTTTTTCCTCTG........................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCAGTAGAGCACGTGAAATA................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ....................................................TAGTTTTTTTGTTTTTTTTTGTCT.............................................................................................................................................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TTAGTTTTTTTGTTTTTTTTTACGG.............................................................................................................................................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................TTTTTTTGTTTTTTTTTTCGGAG............................................................................................................................................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................AGTTTTTTTGTTTTTTTTTGGC............................................................................................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TTAGTTTTTTTGTTTTTTTATC................................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................AGGTTAGTTTTTTTGTTTTTTTTTCCC............................................................................................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................GTTTTTTTGTTTTTTTTTTCTTGG............................................................................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................TAGTTTTTTTGTTTTTTTCTCT................................................................................................................................................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................AGTTTTTTTGTTTTTTTTTTATC.............................................................................................................................................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................AGTTTTTTTGTTTTTTTTTCCT............................................................................................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........AGTGACTTGGCGCAGACT................................................................................................................................................................................................................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................GTTTTTTTGTTTTTTTTTTCGG.............................................................................................................................................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................AGGTTAGTTTTTTTGTTTTTC..................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................TTTTTTTGTTTTTTTTTTCCTTGCC.......................................................................................................................................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................TAGTTTTTTTGTTTTTTCGAG................................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................TTTTTTTGTTTTTTTTTTCCTCTGC.......................................................................................................................................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................TTTTTTGTTTTTTTTTTCGTA............................................................................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................TTTTTGTTTTTTTTTTCCTTTAG.......................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................AGTTTTTTTGTTTTTTTTTTCTTGG............................................................................................................................................................................ | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................TTTTGTTTTTTTTTTCGCG............................................................................................................................................................................. | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................AGTTTTTTTGTTTTTTTTTTCTTTG............................................................................................................................................................................ | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................TTTTTTTGTTTTTTTTTTCCGG............................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................TTTGTTTTTTTTTTCGGC............................................................................................................................................................................. | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................TTTTTGTTTTTTTTTTCCGGC............................................................................................................................................................................ | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TTAGTTTTTTTGTTTTTTTTACGG............................................................................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................TTTTTTGTTTTTTTTTTCCGGAG........................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................TTTGATAACCTTAAGACC..................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .....................AGACTGTCAAAACCT...................................................................................................................................................................................................................... | 15 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |
| .....................................................AGTTTTTTTGTTTTTTTTTTCCCCCC........................................................................................................................................................................... | 26 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................AGTTTTTTTGTTTTTTTTTTCCCGGG........................................................................................................................................................................... | 26 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................AGTTTTTTTGTTTTTTTTTTCC............................................................................................................................................................................... | 22 | 8 | 0.12 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GGAATGTCAGTGACTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAGGTTAGTTTTTTTGTTTTTTTTTTCCTACTTCTAAAACTTTCTATTAATTCTGCAGTAGAGCACGTGAAATAATAAGCAGCCTCCAGGTCTGAGGCAAACAACTTGGAATGACCTTCGATTTGGTTTTCACGATTTTAATATTTAGTCTAAAGTTAGTAGCATTCTGCATTTTTAACATCCTTGCTTTTTGACATATGACG ............................................................(((((((.......(((((........................))))).......)))))))................................................................................................................................ ..................................................51......................................................................123............................................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR029128(GSM416757) H520. (cell line) | SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189786 | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................TCCTACTTCTAAAACTTTT............................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................TTTTTTTTTTCCTACTTCTAGT..................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................TTTTGTTTTTTTTTTCCTGACA.......................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ...............................................................TTTTTTTTTTCCTACTTCAACG..................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |