ID: uc002crf.2_intron_3_0_chr16_2765882_r.3p
GENE: (2)
chr16:2765832-2766081-


(1)
AGO2.ip
(1)
B-CELL
(3)
BRAIN
(15)
BREAST
(11)
CELL-LINE
(9)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(15)
SKIN
(1)
TESTES
(2)
UTERUS

Sense strand
GAGTGAGACTTTGGGGGGCAGCTGGGGAGGGTCTGCCTGTATCCCAGACTGCCCCGAAGCCCAGGCCTCCGACTTCCCCAAGGTCTTCGGGCAGGTCAGGGGCAGGAGGGCCGAGGACTGGAGTGTGAGGCTGAGAGCTGGGCCTCGGCCATGGAACCAGCCCCAGTGAGCGCCCCCACCCGCTCCCCATGCTCCCCCAGCCTGTGGTCGCCCCAGGATGCTGAACCGAATGGTGGGCGGGCAGGACACG
............................................................((((.(((((..((.((((...(((....)))......)))).))..))....))).)))).................................................................................................................................
...........................................................60............................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577743(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
TAX577742(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR040015(GSM532900)
G623T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................GGCAGGAGGGCCGAGCGG....................................................................................................................................1854.000.0013.004.003.006.004.002.001.003.00-3.00-----1.00--1.00----1.001.00---------1.001.001.00---1.00--1.00---1.001.001.001.00---1.00-1.00-----
....................................................................................................GGCAGGAGGGCCGAGCGGT...................................................................................................................................1937.000.002.002.006.002.002.003.001.00-2.00--1.002.001.001.00-2.00--1.00-1.00----1.00-----1.001.00---1.001.00--1.00--1.00-------1.00---------
....................................................................................................GGCAGGAGGGCCGAGCG.....................................................................................................................................175.000.00-1.00----1.00----------1.00----1.00----------------------------1.00----------
....................................................................................................GGCAGGAGGGCCGAGCGT....................................................................................................................................183.000.00-1.001.00-1.00---------------------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGCGGA...................................................................................................................................193.000.001.002.00------------------------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGCGGG...................................................................................................................................193.000.00-1.001.00-----1.00-----------------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGGGGTC..................................................................................................................................202.000.00------1.00--------1.00----------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGAGG....................................................................................................................................182.000.00------1.001.00------------------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGCGA....................................................................................................................................182.000.00-1.00---------1.00--------------------------------------------------
......................................................................................................................................................................................................................AGGATGCTGAACCGAATGGTGGGCGGGC........2812.002.00----------1.00-------------------------------1.00-------------------
....................................................................................................GGCAGGAGGGCCGAGCGTA...................................................................................................................................192.000.00---1.00----------------1.00-----------------------------------------
................................................................GCCTCCGACTTCCCCGGC........................................................................................................................................................................181.000.00-------------------------------1.00------------------------------
....................................................................................................GGCAGGAGGGCCGAGCCG....................................................................................................................................181.000.00-1.00------------------------------------------------------------
...............................................................................................................................................................................................................................AACCGAATGGTGGGCGGGCAGGACA..2511.001.00---------------------------------------1.00----------------------
....................................................................................................GGCAGGAGGGCCGAGCTG....................................................................................................................................181.000.00-------------1.00------------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGGGGT...................................................................................................................................191.000.00-1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................ATGGTGGGCGGGCAGGTCGG.201.000.00---------------------------1.00----------------------------------
....................................................................................................GGCAGGAGGGCCGAGC......................................................................................................................................161.000.00-----------------------------1.00--------------------------------
....................................................................................................GGCAGGAGGGCCGAGCGCT...................................................................................................................................191.000.001.00-------------------------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGCA.....................................................................................................................................171.000.00---------1.00----------------------------------------------------
....................................................................................................................................................................................CGCTCCCCATGCTCCCCCCTCC................................................221.000.00-----------------------------------------------------1.00--------
....................................................................................................GGCAGGAGGGCCGAGCGGC...................................................................................................................................191.000.00--------1.00-----------------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGCAT....................................................................................................................................181.000.00----------------------------------------------1.00---------------
....................................................................................................GGCAGGAGGGCCGAGCGTT...................................................................................................................................191.000.00--------------1.00-----------------------------------------------
....................................................................................................GGCAGGAGGGCCGAGCAGA...................................................................................................................................191.000.00-------------------------1.00------------------------------------
...TGAGACTTTGGGGGGC.......................................................................................................................................................................................................................................1680.250.25----------------------------------------------------------0.25---
...................................................................................................................................................................................................................CCCAGGATGCTGAAC........................1540.250.25---------------------------------------------------------0.25----
..................................................GCCCCGAAGCCCAGGC........................................................................................................................................................................................1650.200.20------------------------------------------------------------0.20-
...............................................................................................TCAGGGGCAGGAGGGC...........................................................................................................................................1670.140.14-------------------------------------------------------------0.14

Antisense strand
GAGTGAGACTTTGGGGGGCAGCTGGGGAGGGTCTGCCTGTATCCCAGACTGCCCCGAAGCCCAGGCCTCCGACTTCCCCAAGGTCTTCGGGCAGGTCAGGGGCAGGAGGGCCGAGGACTGGAGTGTGAGGCTGAGAGCTGGGCCTCGGCCATGGAACCAGCCCCAGTGAGCGCCCCCACCCGCTCCCCATGCTCCCCCAGCCTGTGGTCGCCCCAGGATGCTGAACCGAATGGTGGGCGGGCAGGACACG
............................................................((((.(((((..((.((((...(((....)))......)))).))..))....))).)))).................................................................................................................................
...........................................................60............................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577743(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
TAX577742(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR040015(GSM532900)
G623T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................................CTCCCCCAGCCTGTGGTGACA...................................... 211.000.00---------------------------------------------1.00----------------
..................................................................................................................................................GGCCATGGAACCAGCCC....................................................................................... 171.000.00-------------------------------------------------------1.00------
.......................................................................................................................................................................GAGCGCCCCCACCCGCAGG................................................................ 191.000.00-1.00------------------------------------------------------------
.............................................................................................................................................................................CCCCACCCGCTCCCCCGGC.......................................................... 191.000.00----------------------------1.00---------------------------------
...............................................................................................................................................CTCGGCCATGGAACCC........................................................................................... 161.000.00----------1.00---------------------------------------------------
...............................................................................................................................................CTCGGCCATGGAACCTGGT........................................................................................ 191.000.00------------------------------1.00-------------------------------
...............................................................................................................................................................GGCGCTCACTGGGGC............................................................................ 1540.250.25-----------------------------------------------------------0.25--