ID: uc002cpy.1_intron_14_0_chr16_2342240_r.5p
GENE: ABCA3(18)
chr16:2345391-2345640-


(1)
AGO2.ip
(1)
B-CELL
(2)
BREAST
(3)
CELL-LINE
(1)
LIVER
(15)
SKIN

Sense strand
AGCGCTGGGGCCGAGCTGTCTTTCATCCTTCCCAGAGAGAGCACGCACAGGTACGCCTCCCAGGGAGGGCACGCACAGGTATACATCCAAGATGGGATCCCCATGGGCCATGAGGGCTTTGTGCTCAGAGGCACCTGCTCTGCCCCTCTCTGGCCTGGCCAGTCGGCACTCTTAGACCCTCAGCCTGGGCACCATCAGCCCAGATGAATCTGCTTGGCTGGGTCCTAGGTGCCAGGCCTCCTAGCAAGGA
..........................................................................................(((((...(((...((((..((((((((..(((((((((.((....)))))).......(((((...)))))..)))))....)).)))))))))))))..)))))......................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
....................................................................................................................................................................................CAGCCTGGGCACCATCAAT...................................................1930.000.009.009.005.00-3.001.001.00----1.00-------1.00--
......................................................................................................................................................................................GCCTGGGCACCATCAAT...................................................1723.000.005.005.003.005.00-1.00-2.00----1.00---1.00-----
.....................................................................................................................................................................................AGCCTGGGCACCATCAAT...................................................183.000.001.00-1.00---1.00---------------
..................................................................................................................................................................................CTCAGCCTGGGCACCATCAAT...................................................212.000.001.001.00--------------------
......................................................................................CCAAGATGGGATCCCGAGG.................................................................................................................................................191.000.00--------------1.00-------
.............................................................................................................................................................................................................GAATCTGCTTGGCTGAGGA..........................191.000.00--------1.00-------------
.......................CATCCTTCCCAGAGAGAG.................................................................................................................................................................................................................1811.001.00-------------1.00--------
.GCGCTGGGGCCGAGCTGTCT.....................................................................................................................................................................................................................................2011.001.00----------1.00-----------
.............................TCCCAGAGAGAGCACGTT...........................................................................................................................................................................................................181.000.00------------------1.00---
...........................................................................................................................................................................................................................GGGTCCTAGGTGCCAGG..............1720.500.50--------------------0.50-
...............................................................................................................................GAGGCACCTGCTCTGCC..........................................................................................................1730.330.33---------------------0.33

Antisense strand
AGCGCTGGGGCCGAGCTGTCTTTCATCCTTCCCAGAGAGAGCACGCACAGGTACGCCTCCCAGGGAGGGCACGCACAGGTATACATCCAAGATGGGATCCCCATGGGCCATGAGGGCTTTGTGCTCAGAGGCACCTGCTCTGCCCCTCTCTGGCCTGGCCAGTCGGCACTCTTAGACCCTCAGCCTGGGCACCATCAGCCCAGATGAATCTGCTTGGCTGGGTCCTAGGTGCCAGGCCTCCTAGCAAGGA
..........................................................................................(((((...(((...((((..((((((((..(((((((((.((....)))))).......(((((...)))))..)))))....)).)))))))))))))..)))))......................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
....................................................ACGCCTCCCAGGGAGCTGG................................................................................................................................................................................... 191.000.00-----------------1.00----
..................................................................................................................................................................................................................................AGGTGCCAGGCCTCCTTGGG.... 201.000.00---------------1.00------
.....................................................CGCCTCCCAGGGAGGCGC................................................................................................................................................................................... 181.000.00---------1.00------------