ID: uc002col.1_intron_1_0_chr16_2090240_r.3p
GENE: NTHL1(4)
chr16:2090190-2090439-


(2)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(10)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(2)
SKIN

Sense strand
CCAACAGAGGGCTCAGCCCCTGCCCCAGCACCTCAGGGGCAGCCAAGATGGTCACATGTAGGCTTGCAGCCAGGGCTTTGCGGTTCCAATGTCTAACTGGAGGGCCACGGGGGTGGTGGCAGACTCGCCTCTGGGCGGGGAGGGGCACGGGCTAGGCTGGTGGAGTGTGCCCCTGTTCACCCCGCTTGGCCTCCCAGCAGCAGTGGACACGCATGTGCACAGAATCGCCAACAGGCTGAGGTGGACCAAG
....................................................................................................................................(((.(((.(((((((((..(((......)))..))))))))).))).)))....................................................................
..............................................................................................................................127.....................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
................................................................................................................................................................TGGAGTGTGCCCCTGGTGT.......................................................................191801.000.00754.00533.00300.00211.00-1.00----2.00-------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTG........................................................................18264.000.00130.0072.0030.0031.00----------1.00---------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTTT.......................................................................1934.000.0016.006.008.004.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTGA.......................................................................1925.000.006.0010.004.005.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTGTTT.....................................................................2120.000.004.005.005.004.00-1.00----------------------1.00-------
................................................................................................................................................................TGGAGTGTGCCCCTGGTAA.......................................................................1915.000.002.005.005.003.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTA........................................................................1812.000.002.005.002.003.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTAT.......................................................................1911.000.003.005.002.001.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTGTT......................................................................2010.000.002.00-4.004.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTTG.......................................................................196.000.004.00-1.001.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTCA.......................................................................196.000.00-2.002.002.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTTA.......................................................................194.000.002.00-1.001.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTGC.......................................................................194.000.00-1.002.001.00--------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGGGT.......................................................................193.000.001.00-1.001.00--------------------------------
...................................................................................................................................................................................................AGCAGCAGTGGACACGGCTA...................................203.000.00-------------1.00----------1.00--------1.00--
................................................................................................................................................................TGGAGTGTGCCCCTGGTT........................................................................183.000.002.001.00----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTTTT......................................................................202.000.001.00-1.00---------------------------------
.............................................................................................................................CGCCTCTGGGCGGGGGG............................................................................................................172.000.00------2.00-----------------------------
...............................................................................................................................................GGCACGGGCTAGGCTGGTGA.......................................................................................202.000.00--------2.00---------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTGTTT......................................................................202.000.00-1.001.00---------------------------------
...................................................................................................................................................................................................AGCAGCAGTGGACACGGCT....................................191.000.00-----------------1.00------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTGTTA.....................................................................211.000.00-1.00----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTGTT.......................................................................191.000.001.00-----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTAG.......................................................................191.000.001.00-----------------------------------
...................................................................................................................................TGGGCGGGGAGGGGCTGC.....................................................................................................181.000.00----------------------------------1.00-
......................................................................................................................................................................................................................................ACAGGCTGAGGTGGACCA..1811.001.00--------------------------------1.00---
................................................................................................................................................................TGGAGTGTGCCCCTGGTC........................................................................181.000.00-1.00----------------------------------
....................................................................................................................................................................................................................................CAACAGGCTGAGGTGGACCA..2011.001.00-------------------------1.00----------
................................................................................................................................................................TGGAGTGTGCCCCTGTTTGA......................................................................201.000.00-1.00----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGAC........................................................................181.000.00-1.00----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGCGT.......................................................................191.000.00-1.00----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTC........................................................................1811.001.00--1.00---------------------------------
.................................................................................................................................................CACGGGCTAGGCTGGTGGAG.....................................................................................2011.001.00----------------1.00-------------------
.......................................................................................................................................................................................................................................CAGGCTGAGGTGGACAATG191.000.00------------------------------1.00-----
................................................................................................................................................................TGGAGTGTGCCCCTGGTAC.......................................................................191.000.00--1.00---------------------------------
....................................................................................................................................GGGCGGGGAGGGGCACACA...................................................................................................191.000.00-------------------1.00----------------
..........................................................................................................................ACTCGCCTCTGGGCGTCTG.............................................................................................................191.000.00-----------1.00------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTGT.......................................................................191.000.00-1.00----------------------------------
...............................................................................................................................CCTCTGGGCGGGGAGGGGCACGGGCTAGGC.............................................................................................3011.001.00------------1.00-----------------------
..............................................................................................AACTGGAGGGCCACGGGAAG........................................................................................................................................201.000.00-----------------------1.00------------
...................................................................................................................................................................................................AGCAGCAGTGGACACGACT....................................191.000.00--------------------1.00---------------
...............................................................................................................................................GGCACGGGCTAGGCTGGTGGA......................................................................................2111.001.00-----------------------------1.00------
................................................................................................................................................................TGGAGTGTGCCCCTGGTTG.......................................................................191.000.00-1.00----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTCT.......................................................................191.000.00-1.00----------------------------------
..................................................................................................................................................................................................CAGCAGCAGTGGACACGCAT....................................2011.001.00---------1.00--------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGTCC.......................................................................191.000.001.00-----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTGTA......................................................................201.000.00-1.00----------------------------------
...................................................................................................................................................................................................AGCAGCAGTGGACACGCCAAC..................................211.000.00---------------------1.00--------------
.................................................................................................................................................CACGGGCTAGGCTGGTGGAGTGT..................................................................................2311.001.00--------------------------1.00---------
...............................................................................................................................................GGCACGGGCTAGGCTGGGGGA......................................................................................211.000.00------------------1.00-----------------
................................................................................................................................................................TGGAGTGTGCCCCTGTTT........................................................................181.000.001.00-----------------------------------
................................................................................................................................................................TGGAGTGTGCCCCTGGCG........................................................................181.000.001.00-----------------------------------
.....................................................................................................................................................................................................................................AACAGGCTGAGGTGGACC...1811.001.00-------------------------------1.00----
...................................................................................................................................................................................CCCCGCTTGGCCTCCCAGCAGC.................................................2211.001.00---------------------------1.00--------
................................................................................................................................................................TGGAGTGTGCCCCTGTTGTTG.....................................................................211.000.00--1.00---------------------------------
.................................................................................................................................................CACGGGCTAGGCTGGTGGAGTGAT.................................................................................241.000.00----------------------1.00-------------
........................................................................................................................................................................................................................................AGGCTGAGGTGGACCAAG1820.500.50-----------------------------------0.50

Antisense strand
CCAACAGAGGGCTCAGCCCCTGCCCCAGCACCTCAGGGGCAGCCAAGATGGTCACATGTAGGCTTGCAGCCAGGGCTTTGCGGTTCCAATGTCTAACTGGAGGGCCACGGGGGTGGTGGCAGACTCGCCTCTGGGCGGGGAGGGGCACGGGCTAGGCTGGTGGAGTGTGCCCCTGTTCACCCCGCTTGGCCTCCCAGCAGCAGTGGACACGCATGTGCACAGAATCGCCAACAGGCTGAGGTGGACCAAG
....................................................................................................................................(((.(((.(((((((((..(((......)))..))))))))).))).)))....................................................................
..............................................................................................................................127.....................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
..............................................................................................................................................................................................................CTGTTGGCGATTCTGTGCACATGCGTGT................ 2812.002.00-------2.00----------------------------
...................................................................................................................................................................AGCGGGGTGAACAGGGGCACACT................................................................ 2311.001.00---------1.00--------------------------
...............................................................................TAGACATTGGAACCGC........................................................................................................................................................... 1611.001.00----1.00-------------------------------
...............................................................................TTAGACATTGGAACCGC.......................................................................................................................................................... 1711.001.00----1.00-------------------------------
......................................................................................................................................................................................ACTGCTGCTGGGAGGCCAAGCG.............................................. 2211.001.00-1.00----------------------------------
.........................................................................TAGACATTGGAACCGCAAAGCC........................................................................................................................................................... 2211.001.00---------------1.00--------------------
......................................................................................................................CAGAGGCGAGTCTGC..................................................................................................................... 1550.200.20-----------0.20------------------------