ID: uc002coe.1_intron_2_0_chr16_2049123_r
GENE: ZNF598(5)
chr16:2049073-2049546-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(2)
AGO3.ip 		(1)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(19)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(6)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
OTHER.ip 		(20)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTTCCCAGCGCTCGGCGGCCCCTGCCCACCCCGGATGCCGCCGCCCCCAGGTACGCGTGCTGGCTCAGGCCTGCTCCCTGGGTGTCGGGAGGGGCCGGGGTCAGGCTGGAGCCGCAGGCACAGTCTGCATCTGGGTGGTGGGGACCCCTGTGTGATGCCATCGGCCACCCACATGACCTCCAGCCTCCCGTTAACCACCCTGTGTTCCTTGCCTCTGTGAGACCGGCCCTCATGGCGCCTCCCAGGTCTGAGGGTGCGTGAGCTTGTGTGGGCTGGGCCTGCCACACCAGCAGCAGTGGTGTGGGTGCTGGCCCTGCACCTGCCCTGCAGGGAAGGGGTGGCTGTAGACAGAAGCTGGCCCTGGAGGCCAGGCAGCCCGCAGTCAGCGAGGGTCCTCTCTGGGTCTTGTCCTGCCACCCCTCAGGCTTCAGCGCTGTGGTGCTCCTGAAGGGCACGCCTCCCCCACCCCCGCCG
....................................................................................................................................................................................................................................................................................(((..((((((((.......))))))))..((((.((((...(((((...)))))..)))).))))..............)))...................................................................................................................
....................................................................................................................................................................................................................................................................................277................................................................................360................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAAGCT......................................................................................................................24140.0040.0017.008.007.003.00----2.00------2.00-------------1.00-------------------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAAGC.......................................................................................................................23116.0016.001.006.004.00----1.001.00-1.00------1.00-----------------------1.00-------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAAG........................................................................................................................22110.0010.00--2.00---4.001.00-2.00-----------------------------------1.00---------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGA..........................................................................................................................2019.009.00-2.00--------1.001.00--------------1.00------1.00------1.00-1.00-------1.00----------
.........................................................................................................................................................................................................................................................................................CCACACCAGCAGCAGCAAC..............................................................................................................................................................................198.000.00----5.00--------2.00------------------1.00----------------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAAGCTG.....................................................................................................................2513.003.00-3.00-----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................AGGGGTGGCTGTAGACAGAAGCT......................................................................................................................2313.003.00---3.00---------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAAGCTGGCCCTGGAGGC..........................................................................................................3612.002.00--2.00----------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................GAAGGGGTGGCTGTAGACA............................................................................................................................1912.002.00----------1.001.00-------------------------------------------------
...CCCAGCGCTCGGCGGCCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-----2.00-------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAG...........................................................................................................................1912.002.00-1.001.00----------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGAC.............................................................................................................................1712.002.00--------------2.00----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGCTGTGGTGCTCCTGAAGGGCAC...................2821.501.50-----1.50-------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGCTGTGGTGCTCCTGAAGGGC.....................2621.501.50----------------1.50--------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCAGCGCTGTGGTGCTCCTGAAGGGAC....................311.000.00------------------------------------1.00------------------------
..................CCCCTGCCCACCCCGGATGCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------1.00--------------------------------
................................................................................................................................................................................................................................................................................................................................TGCCCTGCAGGGAAGGGGTGGCTGTAG...............................................................................................................................2711.001.00------------------1.00------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGCTGTGGTGCTCCTTTT.........................221.000.00-----------------------1.00-------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGCTGTGGTGCTCCTGAAGGG......................2721.001.00---------------------------------------------------1.00---------
.................................GATGCCGCCGCCCCCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------1.00---------------------------------------------------
...........................................CCCCCAGGTACGCGTGCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------1.00--------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTGGGTCTTGTCCTGCCACCCCTCAG..................................................2711.001.00------------------------1.00------------------------------------
.......................................................................................................................................................................................................................................................................................................................................CAGGGAAGGGGTGGCTGCCT...............................................................................................................................201.000.00----------------------------------------------------1.00--------
..................................................GTACGCGTGCTGGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------1.00---------------------------------
...........................................................................................................................................................................................................................................................................................................................................GAAGGGGTGGCTGTAGACAGAAA........................................................................................................................231.000.001.00------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................GGGGTGGCTGTAGACAGAAGCT......................................................................................................................2211.001.00--------------------1.00----------------------------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACA............................................................................................................................1811.001.00---------------------1.00---------------------------------------
........................................................................................................................................................................................................................................................................TGTGTGGGCTGGGCCTGCC...............................................................................................................................................................................................1911.001.00------------------------------1.00------------------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAAGCTGG....................................................................................................................2611.001.00--------------------------------------------1.00----------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAGAA.......................................................................................................................2311.009.00-------------------------------1.00-----------------------------
.........................................................................................................................................................................................................GTGTTCCTTGCCTCTGTGAGACC..........................................................................................................................................................................................................................................................2311.001.00----------------------------------------------1.00--------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAA.........................................................................................................................2111.001.00-------------------1.00-----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................GGGTGGCTGTAGACAGAAGCTGGCCCTGGAG............................................................................................................3111.001.00-------------------------------------------1.00-----------------
..........................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTGGGTCTTGTGGA..............................................................181.000.00--------------------------------------1.00----------------------
..............................CCGGATGCCGCCGCCGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------1.00-------------------------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGACAGAAGA.......................................................................................................................2311.0010.001.00------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................GGGTGGCTGTAGACAGAAGCTAGC...................................................................................................................241.000.00-------------------------------------------------1.00-----------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCTGTGGTGCTCCTGAAGGGCAA...................261.000.00------------------------------------------------1.00------------
...........................................................................................................................................................................................................................................................................................................................................GAAGGGGTGGCTGTAGACAGAAGCTGGCC..................................................................................................................2911.001.00--1.00----------------------------------------------------------
...............................................................................................................................................................................................................................................................................................CAGCAGCAGTGGTGTAGGG........................................................................................................................................................................191.000.00-------------------------------------1.00-----------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCCCACCCCCGCGGGG191.000.00-----------------------------------------------1.00-------------
...........................................................................................................................................................................................................................................................................................................................................GAAGGGGTGGCTGTAGACAGAAG........................................................................................................................2311.001.00-------1.00-----------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................GGGTGGCTGTAGACAGAAGCTGGCCCTGGAGG...........................................................................................................3211.001.00-------------------------1.00-----------------------------------
...............................................................................................................................................................................................................................................TCCCAGGTCTGAGGGTG..........................................................................................................................................................................................................................1730.670.67-----------------0.67-------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGTGGTGCTCCTGAAGGGC.....................2220.500.50-----------------------------------------------------0.50-------
........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGCGCTGTGGTGCTCCTGAAGGGC.....................2920.500.50-----0.50-------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGTGGTGCTCCTGAAGG.......................2020.500.50-----0.50-------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGTGGTGCTCCTGAAGGGCA....................2320.500.50--------------------------------------------------------0.50----
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCGCTGTGGTGCTCCTGAAGGGC.....................2720.500.50----------------0.50--------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCTGTGGTGCTCCTGAAGGGC.....................2420.500.50------------------------------------------------------0.50------
............................................................................................................................................................................................................................................................................................................................................AAGGGGTGGCTGTAGA..............................................................................................................................1620.500.50-----------0.50-------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCAGCGCTGTGGTGCTCCT............................2320.500.50-------------------------------------------------------0.50-----
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCCCACCCCCGCCG1750.200.20----------------------------------------------------------0.20--
.........................................................................................AGGGGCCGGGGTCAGG.................................................................................................................................................................................................................................................................................................................................................................................1680.120.12------------------------------------------------------------0.12

Antisense strand
CTTCCCAGCGCTCGGCGGCCCCTGCCCACCCCGGATGCCGCCGCCCCCAGGTACGCGTGCTGGCTCAGGCCTGCTCCCTGGGTGTCGGGAGGGGCCGGGGTCAGGCTGGAGCCGCAGGCACAGTCTGCATCTGGGTGGTGGGGACCCCTGTGTGATGCCATCGGCCACCCACATGACCTCCAGCCTCCCGTTAACCACCCTGTGTTCCTTGCCTCTGTGAGACCGGCCCTCATGGCGCCTCCCAGGTCTGAGGGTGCGTGAGCTTGTGTGGGCTGGGCCTGCCACACCAGCAGCAGTGGTGTGGGTGCTGGCCCTGCACCTGCCCTGCAGGGAAGGGGTGGCTGTAGACAGAAGCTGGCCCTGGAGGCCAGGCAGCCCGCAGTCAGCGAGGGTCCTCTCTGGGTCTTGTCCTGCCACCCCTCAGGCTTCAGCGCTGTGGTGCTCCTGAAGGGCACGCCTCCCCCACCCCCGCCG
....................................................................................................................................................................................................................................................................................(((..((((((((.......))))))))..((((.((((...(((((...)))))..)))).))))..............)))...................................................................................................................
....................................................................................................................................................................................................................................................................................277................................................................................360................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.................................GGGGGCGGCGGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 1522.002.00------------2.00------------------------------------------------
................................................................................................................................................................................CCTCCAGCCTCCCGTGAG........................................................................................................................................................................................................................................................................................ 181.000.00---------------------------------------1.00---------------------
................................................................................................................................................................................................................................................................................CTGGGCCTGCCACACATTG....................................................................................................................................................................................... 191.000.00----------------------1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGGGGTGGGGGAGG 1830.330.33---------------------------------------------------------0.33---
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGGGTGGGGGAGGCG.. 1850.200.20-----------------------------------------------------------0.20-
.......GGGGCCGCCGAGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1560.170.17------------------0.17------------------------------------------