ID: uc002clr.2_intron_0_0_chr16_1470614_r
GENE: (1)
chr16:1470564-1470742-


(2)
AGO2.ip
(1)
AGO3.ip
(7)
B-CELL
(3)
BRAIN
(10)
BREAST
(32)
CELL-LINE
(6)
CERVIX
(3)
HEART
(4)
HELA
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(15)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
CGAGGAGTCAAGGCAGCAATGAATCGTGTCTTGTGTGCCCCGGCGGCCGGGTGAGCTCCTCAAGGTCTCGGAGGGCCGAGGGCAGACACCGGCGGGCGGGCGGAGCGCTTACTGCTCTCTCTCTTCCAGGGCCGTCCGGGCGCTGAGGCTCATAGGCTGGGCTTCCCGAAGCCTTCATC
.....................................................................((((((..((((((((...(((.....)))(((...)))...))))))))..))))))....................................................
.............................................................62.................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189783SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
TAX577742(Rovira)
total RNA. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR029130(GSM416759)
DLD2. (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR038857(GSM458540)
D20. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
GSM532872(GSM532872)
G652T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................TTACTGCTCTCTCTCTTCCAG..................................................21120.0020.0018.00---------1.00------------1.00----------------------------------------------------------------------
....................GAATCGTGTCTTGTGTG..............................................................................................................................................17113.0013.00--13.00-------------------------------------------------------------------------------------------
............................................................................................................TTACTGCTCTCTCTCTTCCAGT.................................................22113.0020.004.00---------1.00-----------------------------1.001.00----------1.00---1.00-----------------1.00----1.001.00------1.00------
..................................................................CTCGGAGGGCCGAGGGC................................................................................................17112.0012.00-9.00-3.00------------------------------------------------------------------------------------------
.......................TCGTGTCTTGTGTGCAG...........................................................................................................................................177.000.005.00---------1.00------------------------------------------1.00----------------------------------------
..........................................................CTCAAGGTCTCGGAGGGC.......................................................................................................1817.007.00---2.00-3.00-----1.00-----1.00----------------------------------------------------------------------------
...............................................CGGGTGAGCTCCTCAAGGTATC..............................................................................................................227.000.00------7.00---------------------------------------------------------------------------------------
......................ATCGTGTCTTGTGTGCCCCGGCG......................................................................................................................................2314.004.00-------2.00----------2.00---------------------------------------------------------------------------
...........................................................TCAAGGTCTCGGAGGGCC......................................................................................................1814.004.00-4.00--------------------------------------------------------------------------------------------
..............AGCAATGAATCGTGTCTTGTG................................................................................................................................................2114.004.00----1.00---------3.00-------------------------------------------------------------------------------
...............GCAATGAATCGTGTCTTGTG................................................................................................................................................2013.003.00----3.00-----------------------------------------------------------------------------------------
............................................................CAAGGTCTCGGAGGGCCGAGGG.................................................................................................2213.003.00----3.00-----------------------------------------------------------------------------------------
..................ATGAATCGTGTCTTGTGTGCCCCGGC.......................................................................................................................................2613.003.00-3.00--------------------------------------------------------------------------------------------
..............................................................AGGTCTCGGAGGGCCGAGGG.................................................................................................2013.003.00-------1.00-1.00------------------1.00-----------------------------------------------------------------
......................ATCGTGTCTTGTGTGCCCCGG........................................................................................................................................2113.003.00----2.00-----------------------------------------------------------1.00-----------------------------
.........................................................CCTCAAGGTCTCGGAGGGC.......................................................................................................1912.002.00-1.00-1.00------------------------------------------------------------------------------------------
.............................................GCCGGGTGAGCTCCTCAAG...................................................................................................................1912.002.00---------1.00---1.00--------------------------------------------------------------------------------
..................................................................CTCGGAGGGCCGAGGGCA...............................................................................................1812.002.00-----2.00----------------------------------------------------------------------------------------
............................................................................................................TTACTGCTCTCTCTCTTCCAGA.................................................2212.0020.00---------------------------------------------------------------------------------1.00-1.00----------
...........................................................................................................CTTACTGCTCTCTCTCTTCCAGT.................................................2312.001.001.00--------------------1.00------------------------------------------------------------------------
.................AATGAATCGTGTCTTGTG................................................................................................................................................1812.002.00-1.00-1.00------------------------------------------------------------------------------------------
................................................................GTCTCGGAGGGCCGAGGG.................................................................................................1812.002.00---1.00---------------------------------------------------------------------------------------1.00--
..........................................................CTCAAGGTCTCGGAGGGCCGAGG..................................................................................................2312.002.00------------------------------------------------------1.00---------------------------1.00-----------
...........................................CGGCCGGGTGAGCTCCTCAAG...................................................................................................................2112.002.00-------------1.00------------1.00-------------------------------------------------------------------
.......................TCGTGTCTTGTGTGCAGCC.........................................................................................................................................192.000.00-------------------------1.00-------------1.00------------------------------------------------------
......................................................GCTCCTCAAGGTCTCGGA...........................................................................................................1812.002.00-------------------------------------------------------------------------1.00---1.00----------------
......GTCAAGGCAGCAATGAATCGT........................................................................................................................................................2112.002.00-------2.00--------------------------------------------------------------------------------------
..........AGGCAGCAATGAATCGTG.......................................................................................................................................................1812.002.00-----1.00-----1.00----------------------------------------------------------------------------------
..........................................................................GCCGAGGGCAGACACCGGCGGGCGGGGGG............................................................................291.000.00------------1.00---------------------------------------------------------------------------------
....................................................................CGGAGGGCCGAGGGCAGACACCGGCGGGC..................................................................................2911.001.00------------1.00---------------------------------------------------------------------------------
.................AATGAATCGTGTCTTGTGTGCCCCCG........................................................................................................................................2611.001.00------------------------------------------------1.00---------------------------------------------
........................................................TCCTCAAGGTCTCGGAG..........................................................................................................1711.001.00---------1.00------------------------------------------------------------------------------------
...........................GTCTTGTGTGCCCCGGCG......................................................................................................................................1811.001.00--------------------------------1.00-------------------------------------------------------------
.........................................................................................CGGCGGGCGGGCGGAGGGG.......................................................................191.000.00--------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................GCGCTGAGGCTCATAGGCTGGGA.................231.000.00-----------------1.00----------------------------------------------------------------------------
....................GAATCGTGTCTTGTGTGCCCCGGCG......................................................................................................................................2511.001.00----------------------------------------------------------1.00-----------------------------------
......................ATCGTGTCTTGTGTGCCC...........................................................................................................................................1811.001.00-1.00--------------------------------------------------------------------------------------------
.......................TCGTGTCTTGTGTGCAGC..........................................................................................................................................181.000.00--------------------1.00-------------------------------------------------------------------------
.............................CTTGTGTGCCCCGGCGGCCGGGTGAG............................................................................................................................2611.001.00-------------1.00--------------------------------------------------------------------------------
.............................................GCCGGGTGAGCTCCTCAAGGTC................................................................................................................2211.001.00--------------------------------------------------1.00-------------------------------------------
..................ATGAATCGTGTCTTGTGTGC.............................................................................................................................................2011.001.00---------1.00------------------------------------------------------------------------------------
.......TCAAGGCAGCAATGAATC..........................................................................................................................................................1811.001.00-------------------------1.00--------------------------------------------------------------------
..................................GTGCCCCGGCGGCCGGGTGA.............................................................................................................................2011.001.00-------------------------------------------------1.00--------------------------------------------
............................................................................................................TTACTGCTCTCTCTCTTCC....................................................1911.001.00---------------1.00------------------------------------------------------------------------------
.GAGGAGTCAAGGCAGCAATGAATCG.........................................................................................................................................................2511.001.00-------------------------------------------1.00--------------------------------------------------
......................ATCGTGTCTTGTGTGCCCCG.........................................................................................................................................2011.001.00-1.00--------------------------------------------------------------------------------------------
........................................................................................CCGGCGGGCGGGCGGTCCC........................................................................191.000.00---------------------------------------------------------------1.00------------------------------
..................................................GTGAGCTCCTCAAGGTCTCGGAGGGC.......................................................................................................2611.001.00-------------------1.00--------------------------------------------------------------------------
.GAGGAGTCAAGGCAGCAATGAATC..........................................................................................................................................................2411.001.00-----1.00----------------------------------------------------------------------------------------
.............................................................AAGGTCTCGGAGGGCCGAGGGC................................................................................................2211.001.00---1.00------------------------------------------------------------------------------------------
..................ATGAATCGTGTCTTGTGTG..............................................................................................................................................1911.001.00-------1.00--------------------------------------------------------------------------------------
..................................GTGCCCCGGCGGCCGGGTGAGCTCCT.......................................................................................................................2611.001.00----------------------1.00-----------------------------------------------------------------------
............................................................................................CGGGCGGGCGGAGCGGGCA....................................................................191.000.00---------------------1.00------------------------------------------------------------------------
.......................................................................AGGGCCGAGGGCAGACAC..........................................................................................1811.001.00-----------1.00----------------------------------------------------------------------------------
....................GAATCGTGTCTTGTGT...............................................................................................................................................1611.001.00-------------------------------------------------------------------------------------1.00--------
......................................................GCTCCTCAAGGTCTCGGAGG.........................................................................................................2011.001.00---------------------------------------------1.00------------------------------------------------
......................................CCCGGCGGCCGGGTGAGCTCCTCAAGGT.................................................................................................................2811.001.00---1.00------------------------------------------------------------------------------------------
............................................................................................................TTACTGCTCTCTCTCTTCCA...................................................2011.001.00----------1.00-----------------------------------------------------------------------------------
....................................................GAGCTCCTCAAGGTCTCGGAG..........................................................................................................2111.001.00--------------------------------------------------------------------------------------1.00-------
.................AATGAATCGTGTCTTGTGTGCCCC..........................................................................................................................................2411.001.00-------------------1.00--------------------------------------------------------------------------
......................ATCGTGTCTTGTGTGCCCCGGCGGCC...................................................................................................................................2611.001.00-----1.00----------------------------------------------------------------------------------------
...................................................................TCGGAGGGCCGAGGGCAGACACCGGC......................................................................................2611.001.00-----------------------------------------------------------------1.00----------------------------
...........................................................................................................CTTACTGCTCTCTCTCTTCCAG..................................................2211.001.00----------------------------------------------------------------------1.00-----------------------
............................................................................................................TTACTGCTCTCTCTCTTCCATT.................................................2211.001.00--------------------------------------------------------------1.00-------------------------------
................................................................GTCTCGGAGGGCCGAGGGCAGACACCGGC......................................................................................2911.001.00-1.00--------------------------------------------------------------------------------------------
........................................CGGCGGCCGGGTGAGCTCCTCA.....................................................................................................................2211.001.00------------------------------------------------------------------------------1.00---------------
......GTCAAGGCAGCAATGAATA..........................................................................................................................................................191.000.00---------------------------------------------------------1.00------------------------------------
...........................................................................CCGAGGGCAGACACCGGC......................................................................................1811.001.00--------------------------------------------------------------------1.00-------------------------
....................GAATCGTGTCTTGTGTGCC............................................................................................................................................1911.001.00--------------------------------------1.00-------------------------------------------------------
............................................................................................CGGGCGGGCGGAGCGGGAA....................................................................191.000.00----------------------------------------------------------------------------1.00-----------------
.......................................................................AGGGCCGAGGGCAGACACCG........................................................................................2011.001.00-------------------------------------1.00--------------------------------------------------------
........CAAGGCAGCAATGAATCGTG.......................................................................................................................................................2011.001.00-----1.00----------------------------------------------------------------------------------------
..................................................................CTCGGAGGGCCGAGGGCAGACACCGG.......................................................................................2611.001.00-----------------------------------------------------------------------------------------1.00----
.......................................................CTCCTCAAGGTCTCGGAG..........................................................................................................1811.001.00---------------------------------1.00------------------------------------------------------------
........................CGTGTCTTGTGTGCCCCG.........................................................................................................................................1811.001.00-1.00--------------------------------------------------------------------------------------------
........CAAGGCAGCAATGAATCG.........................................................................................................................................................1811.001.00-----1.00----------------------------------------------------------------------------------------
.GAGGAGTCAAGGCAGCAATGAA............................................................................................................................................................2211.001.00---------------1.00------------------------------------------------------------------------------
.................................................GGTGAGCTCCTCAAGGTCTC..............................................................................................................2011.001.00------------------------------------------------------------------1.00---------------------------
.........................................................................................CGGCGGGCGGGCGGAGCGGAGC....................................................................221.000.00-----------------------------------------------------------------------1.00----------------------
............................................................................................................TTACTGCTCTCTCTCTTCCAGTT................................................2311.0020.00----1.00-----------------------------------------------------------------------------------------
..................................................................................................................................GCCGTCCGGGCGCTGAG................................1711.001.00----------------------------1.00-----------------------------------------------------------------
............................................................................................................TTACTGCTCTCTCTCTTCCAGG.................................................2211.001.001.00---------------------------------------------------------------------------------------------
......................................................................GAGGGCCGAGGGCAGACA...........................................................................................1811.001.00---------------------------1.00------------------------------------------------------------------
....GAGTCAAGGCAGCAATGAA............................................................................................................................................................1911.001.00-----------------------------1.00----------------------------------------------------------------
.....................................................................................................GGAGCGCTTACTGCTCTCTCTCTTCCAGGGCCGT............................................3411.001.00-----------------------------1.00----------------------------------------------------------------
.......................................................CTCCTCAAGGTCTCGGAGGGC.......................................................................................................2111.001.00---1.00------------------------------------------------------------------------------------------
..........................................................CTCAAGGTCTCGGAGGGCCGAGGGCAG..............................................................................................2711.001.00-----------------------------------------------1.00----------------------------------------------
................................GTGTGCCCCGGCGGCCGG.................................................................................................................................1811.001.00--------------------1.00-------------------------------------------------------------------------
...................................................................TCGGAGGGCCGAGGGCAA..............................................................................................181.000.00------------------------------------------------------------1.00---------------------------------
.....................................CCCCGGCGGCCGGGTGAGCTCCTCAAG...................................................................................................................2711.001.00----------------------------------------------------------------------------------------1.00-----
....................................GCCCCGGCGGCCGGGTGAGCTCC........................................................................................................................2311.001.00-----------------------------------1.00----------------------------------------------------------
................................................................................................CGGGCGGAGCGCTTACTG.................................................................1811.001.00-------------------------------------------------------------------1.00--------------------------
............................................................................................CGGGCGGGCGGAGCGGGGT....................................................................191.000.00--------------------------------------------1.00-------------------------------------------------
........................................................................................CCGGCGGGCGGGCGGTCC.........................................................................181.000.00-------------------------------------------------------------1.00--------------------------------
......................ATCGTGTCTTGTGTGC.............................................................................................................................................1611.001.00----------------------------------------------1.00-----------------------------------------------
......................................................GCTCCTCAAGGTCTCGGAGGGC.......................................................................................................2211.001.00-1.00--------------------------------------------------------------------------------------------
......................................................................................CACCGGCGGGCGGGCGGCGTC........................................................................211.000.00------------------------------------------------------------------------1.00---------------------
...GGAGTCAAGGCAGCAATGAATCGT........................................................................................................................................................2411.001.00------------------------1.00---------------------------------------------------------------------
...................TGAATCGTGTCTTGTGTGC.............................................................................................................................................1911.001.00------------------------------------1.00---------------------------------------------------------
..........................................................CTCAAGGTCTCGGAGGG........................................................................................................1711.001.00-------1.00--------------------------------------------------------------------------------------
....................................GCCCCGGCGGCCGGGGCAC............................................................................................................................191.000.00------------1.00---------------------------------------------------------------------------------
............................................................CAAGGTCTCGGAGGGCCG.....................................................................................................1811.001.00---1.00------------------------------------------------------------------------------------------
..........................TGTCTTGTGTGCCCCGGC.......................................................................................................................................1811.001.00---1.00------------------------------------------------------------------------------------------
......................................CCCGGCGGCCGGGTGAGCTCCTC......................................................................................................................2311.001.00------------------------------------------------------------------------------------1.00---------
.......................................................................................ACCGGCGGGCGGGCGGAG..........................................................................1811.001.00-----------------------------------------------------------1.00----------------------------------
.............................................GCCGGGTGAGCTCCTCAAGGT.................................................................................................................2111.001.00---------------------------------------------------1.00------------------------------------------
.....AGTCAAGGCAGCAATGAATCG.........................................................................................................................................................2111.001.00-1.00--------------------------------------------------------------------------------------------
.............CAGCAATGAATCGTGTCTTGT.................................................................................................................................................2111.001.00-------------------------------------------------------1.00--------------------------------------
.....................AATCGTGTCTTGTGTGCCCCGGC.......................................................................................................................................2311.001.00----1.00-----------------------------------------------------------------------------------------
..............AGCAATGAATCGTGTCTTGT.................................................................................................................................................2011.001.00------------------------1.00---------------------------------------------------------------------
...GGAGTCAAGGCAGCAATGA.............................................................................................................................................................1911.001.00---------------------------------------------------------------------1.00------------------------
.GAGGAGTCAAGGCAGCAATG..............................................................................................................................................................2011.001.00------------------------------1.00---------------------------------------------------------------
..........................................................CTCAAGGTCTCGGAGGGT.......................................................................................................1811.001.00-----1.00----------------------------------------------------------------------------------------
.......................................................................................ACCGGCGGGCGGGCGGAGCG........................................................................2011.001.00---------------------------1.00------------------------------------------------------------------
.........................GTGTCTTGTGTGCCCCGGC.......................................................................................................................................1911.001.00----1.00-----------------------------------------------------------------------------------------
........CAAGGCAGCAATGAATC..........................................................................................................................................................1720.500.50---------------0.50------------------------------------------------------------------------------
........................................CGGCGGCCGGGTGAG............................................................................................................................1550.200.20---------------------------------0.20------------------------------------------------------------
............................................................................................CGGGCGGGCGGAGCGC.......................................................................1670.140.14--------------------------------------------------------------------------------------------0.14-
........................................................................................CCGGCGGGCGGGCGGA...........................................................................1690.110.11-----------------------------------0.11----------------------------------------------------------
..........................................................................................GGCGGGCGGGCGGAGC.........................................................................1690.110.11---------------------------------------------------------------------------------------------0.11

Antisense strand
CGAGGAGTCAAGGCAGCAATGAATCGTGTCTTGTGTGCCCCGGCGGCCGGGTGAGCTCCTCAAGGTCTCGGAGGGCCGAGGGCAGACACCGGCGGGCGGGCGGAGCGCTTACTGCTCTCTCTCTTCCAGGGCCGTCCGGGCGCTGAGGCTCATAGGCTGGGCTTCCCGAAGCCTTCATC
.....................................................................((((((..((((((((...(((.....)))(((...)))...))))))))..))))))....................................................
.............................................................62.................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189783SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
TAX577742(Rovira)
total RNA. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR029130(GSM416759)
DLD2. (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR038857(GSM458540)
D20. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
GSM532872(GSM532872)
G652T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................GAGGGCCGAGGGCAGACG........................................................................................... 1811.000.005.00-------5.00--------------1.00----------------------------------------------------------------------
...........................................................................................................................TTCCAGGGCCGTCCGTCGG..................................... 192.000.00-------------------------------2.00--------------------------------------------------------------
..........................................................................................................................CTTCCAGGGCCGTCCGGGCGG.................................... 211.000.00-----------1.00----------------------------------------------------------------------------------
.....................................................................GGAGGGCCGAGGGCAGCG............................................................................................ 181.000.00--------1.00-------------------------------------------------------------------------------------
........................................................................................................................CTCTTCCAGGGCCGTCGC......................................... 181.000.00------------------------------1.00---------------------------------------------------------------
..................................................GTGAGCTCCTCAAGGTCTAGC............................................................................................................ 211.000.00----------------------------------1.00-----------------------------------------------------------
......................................................................................................................CTCTCTTCCAGGGCCGG............................................ 171.000.00----------------1.00-----------------------------------------------------------------------------
.......................................CCGGCGGCCGGGTGAGCCCC........................................................................................................................ 201.000.001.00---------------------------------------------------------------------------------------------
...........................................................................................................................TTCCAGGGCCGTCCGTCG...................................... 181.000.00--------------------------1.00-------------------------------------------------------------------
......................................................................................CACCGGCGGGCGGGCGGTG.......................................................................... 191.000.00------------------------------------------1.00---------------------------------------------------
...................................ACCCGGCCGCCGGGGCA............................................................................................................................... 1711.001.00---------------------------------------------------------------------------1.00------------------
..................................................GTGAGCTCCTCAAGGTTA............................................................................................................... 181.000.00------------------------------------------------------------------------------------------1.00---
........................................................................................................................CTCTTCCAGGGCCGTCGG......................................... 181.000.00----------------1.00-----------------------------------------------------------------------------
......................................................................................................................CGGCCCTGGAAGAGAG............................................. 1620.500.50----------------0.50-----------------------------------------------------------------------------
.......................................................................................................................................AGCCTCAGCGCCCGG............................. 1550.200.20----------------------------------0.20-----------------------------------------------------------