ID: uc002chm.1
GENE: PIGQ(2)
chr16:625639-625888+


(2)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(1)
AGO3.ip
(1)
B-CELL
(4)
BREAST
(17)
CELL-LINE
(2)
CERVIX
(1)
HEART
(4)
HELA
(1)
KIDNEY
(2)
OTHER
(11)
SKIN
(2)
XRN.ip

Sense strand
CGTGTTAGTCACGTGCACTGTGAGGTGGGCGCGTTGAGCGCTGCCTACCACCACCTGGGCCACCGAGGGCCCCTCCCACCTGCCCCCTGTCCTGCTGAGCTCAGGAGTGTGGCCTGGGTGTTTGTGGTCCCCTGCACAGTGGGGGACGGTGGGAGGAGGATCTGGAGAGGGACACATCACTCCTCTCCACTCCCACGCAGAGTGTTCAAGCTCTGGCCCCTGTCCTTCCTCGGGAGCAAACTCTCCACGT
..............................................................................................................................................((((..(((((((((((((.((........)).))).)))))).))))))))........................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR029129(GSM416758)
SW480. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGA..................................................................................23143.0043.008.0010.004.004.005.00--2.001.001.00--1.00--2.001.001.00----------1.00------1.00---1.00------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAG...................................................................................2216.006.002.00------1.00-----1.00---------1.00------1.00---------------
................................................................................................................................................GACGGTGGGAGGAGGATCTGGAGAAC................................................................................2615.001.00-----5.00----------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGA....................................................................................2114.004.00--3.00--------1.00----------------------------------
................................................................................................................................................................................TCACTCCTCTCCACTCCCACGC....................................................2214.004.00------4.00---------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGG.....................................................................................2014.004.002.001.00--------------------1.00-----------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGAAT................................................................................2512.0043.00--2.00-------------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGACAT...............................................................................2612.0043.00--------2.00-------------------------------------
.........................................................................................................................................AGTGGGGGACGGTGGGAGGAGGAT.........................................................................................2412.002.00---2.00------------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGATA................................................................................2512.0043.00----2.00-----------------------------------------
..................................................................................................................................................................................ACTCCTCTCCACTCCCACGCAGA.................................................2312.002.00--------------2.00-------------------------------
............................................................................................................................................................AGGATCTGGAGAGGGACACA..........................................................................2012.002.00---------2.00------------------------------------
.............................................................................................................................................GGGGACGGTGGGAGGCCGG..........................................................................................192.000.00----------------------------------1.00------1.00----
................................................................................................................................................................TCTGGAGAGGGACACATC........................................................................1811.001.00---------------------------------1.00------------
........................................................................................................................................................................................................AGTGTTCAAGCTCTGGAGCT..............................201.000.00-------------------------1.00--------------------
.........................................................................................................................................AGTGGGGGACGGTGGGAGGAGGAAAGT......................................................................................2711.001.00-----------1.00----------------------------------
..................................................................................................................................................CGGTGGGAGGAGGATCTGGAGAGA................................................................................241.000.00------------1.00---------------------------------
.......................................................................................................................................................................................TCTCCACTCCCACGCTC..................................................171.000.00-------------------------------1.00--------------
.........................................................................................................................................AGTGGGGGACGGTGGATT...............................................................................................181.000.00---------------------------1.00------------------
...................................................................................................................................................................................................................TCTGGCCCCTGTCCTTTTTG...................201.000.00--------------------------1.00-------------------
.............................................................................................................................................................................................................................GTCCTTCCTCGGGAG..............1541.001.00-------------------------------------------0.500.50-
...............................................................................................................................................GGACGGTGGGAGGAGGATCTGGAGAGGGAC.............................................................................3011.001.00------------------1.00---------------------------
................................................................................................................................................................................TCACTCCTCTCCACTCCCACGCA...................................................2311.001.00----------------1.00-----------------------------
...........................................................................................................................................................GAGGATCTGGAGAGGGAC.............................................................................1811.001.00-------------------------------------1.00--------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGTAAA..................................................................................2311.001.00---1.00------------------------------------------
................................................................................................................................................GACGGTGGGAGGAGGATCTGTAG...................................................................................231.000.00----------1.00-----------------------------------
.......................................................................................................................................................................................TCTCCACTCCCACGCGC..................................................171.000.00----------------------------------------1.00-----
....................................................................................................................................................................................TCCTCTCCACTCCCACGCAGCTTT..............................................2411.001.00-------------1.00--------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGT..................................................................................2311.006.00-------------------1.00--------------------------
.........................................................................................................................................AGTGGGGGACGGTGGGAGGAGGA..........................................................................................2311.001.001.00---------------------------------------------
....................................................................................................................................................................................TCCTCTCCACTCCCACGCAG..................................................2011.001.00-----1.00----------------------------------------
.........................................................................................................................................AGTGGGGGACGGTGGGAGGAGGAAT........................................................................................2511.001.001.00---------------------------------------------
....................................................................................................................................................................................TCCTCTCCACTCCCACGCAGAAA...............................................231.000.00--------------------------------1.00-------------
................................................................................................................................................GACGGTGGGAGGAGGATCTGGAGA..................................................................................2411.001.00-----1.00----------------------------------------
............................................................................................................................................................................................................................TGTCCTTCCTCGGGAGC.............1711.001.00--------------------------------------1.00-------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAT...................................................................................2211.004.00--------------------1.00-------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTG......................................................................................1911.001.00------------------------1.00---------------------
................................................................................................................................................................................TCACTCCTCTCCACTCCCACGCAT..................................................2411.001.00---------------------1.00------------------------
............................................................................................................................................................................................................................TGTCCTTCCTCGGGAG..............1620.500.50------------------------------------------0.50---
.............................................TACCACCACCTGGGC..............................................................................................................................................................................................1560.170.17-----------------0.17----------------------------

Antisense strand
CGTGTTAGTCACGTGCACTGTGAGGTGGGCGCGTTGAGCGCTGCCTACCACCACCTGGGCCACCGAGGGCCCCTCCCACCTGCCCCCTGTCCTGCTGAGCTCAGGAGTGTGGCCTGGGTGTTTGTGGTCCCCTGCACAGTGGGGGACGGTGGGAGGAGGATCTGGAGAGGGACACATCACTCCTCTCCACTCCCACGCAGAGTGTTCAAGCTCTGGCCCCTGTCCTTCCTCGGGAGCAAACTCTCCACGT
..............................................................................................................................................((((..(((((((((((((.((........)).))).)))))).))))))))........................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR029129(GSM416758)
SW480. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................TGCCCCCTGTCCTGCCAG........................................................................................................................................................ 181.000.00-----------------------------1.00----------------
........................................................................CTCCCACCTGCCCCCTGTCGCT............................................................................................................................................................ 221.000.00----------1.00-----------------------------------
.............................................TACCACCACCTGGGCTTG........................................................................................................................................................................................... 1861.000.00------------------------------------1.00---------
.................................................................................CAGCAGGACAGGGGGC......................................................................................................................................................... 1670.140.14---------------------------------------------0.14