ID: uc002bww.2_intron_6_0_chr15_101832246_r.5p
GENE: (2)
chr15:101833030-101833279-


(2)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(2)
HEART 		(3)
HELA 		(2)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CCTTTGTTGAGAAGACTGAAAACATTGTTAGTGAACAACAACAGAATATGGTACGTGTCTGTAGGGGAAAGTAATTTTTTCCCCTAGAGTAAATGTTGCAGTGTTTCCTGAAGAAGTTGTAGCACGTGCTACTGGTTAAACCTACATGTTTCTTTTTCTTTTTCTTTTTCTTTTTTATTTATATTTTGAAAAAATATTTTTTCCATAATGGAAGCCACATTCAATACATGTTTTTTCTTAAAATGAGAAA
..................................................((((((..((.((((((((((.....)))))))))).))...)))).))..........(((((((..(((((....))))).((.....)).........)))))))............................................................................................
..................................................51..................................................................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM956925PAZD5SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTCCTG......................................................................2894.000.0029.0019.0027.0012.005.002.00------------------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTCCTG......................................................................2785.000.0035.0023.0015.0011.00--1.00-----------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTATG.......................................................................2766.000.0029.0028.004.005.00--------------------------------------
................................................................................................................................................................TTTCTTTTTCTTTTTTATTTATATTTTG..............................................................28128.0028.008.005.006.008.00--1.00-----------------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTATG.......................................................................2623.000.0013.007.001.002.00--------------------------------------
..........................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTTATTTATATTTTG..............................................................34110.0010.004.001.001.004.00--------------------------------------
..........................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTTATG.......................................................................259.000.005.004.00----------------------------------------
.................................................................................................................................................................TTCTTTTTCTTTTTTATTTATATTTTG..............................................................2717.007.002.003.002.00---------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTCCG.......................................................................275.000.00--4.001.00--------------------------------------
...........................................................................................................................................................TTCTTTTTCTTTTTCTTTTTTATTTATATTTTG..............................................................3315.005.00--2.003.00--------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTAATG........................................................................304.000.003.00-1.00---------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTAAAG.........................................................................293.000.00--2.001.00--------------------------------------
..........................GTTAGTGAACAACAACAGAAT...........................................................................................................................................................................................................2113.003.00-------3.00----------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTGGT..........................................................................263.000.00-----3.00------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTCTAG......................................................................283.000.00--1.002.00--------------------------------------
..................................................................................................................................................................TCTTTTTCTTTTTTATTTATATTTTG..............................................................2613.003.002.00-1.00---------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTAAG............................................................................263.000.00--1.002.00--------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCCTTG............................................................................262.000.00---2.00--------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTTACT.........................................................................282.000.00----2.00-------------------------------------
...............................................................................................................................................ACATGTTTCTTTTTCTTTTTCTTTTTCTTT.............................................................................3012.002.00----2.00-------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCGC..............................................................................242.000.00----2.00-------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTCTTG........................................................................272.000.001.00--1.00--------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTTTCTTG......................................................................302.000.001.00--1.00--------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTCCTA......................................................................282.000.002.00-----------------------------------------
...........................................................................................................................................................TTCTTTTTCTTTTTCTTTTTTATG.......................................................................242.000.00-2.00----------------------------------------
...........................................................................................................................................................TTCTTTTTCTTTTTCTACTA...........................................................................202.000.00-------------2.00----------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTCC...........................................................................262.000.00-----2.00------------------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTACG.......................................................................262.000.00-2.00----------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTCTTG.........................................................................282.000.00--1.001.00--------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTCTG............................................................................262.000.00---1.001.00-------------------------------------
............................................................................................................................................................TCTTTTTCTTTTTCTTTTTTATTTATATTTTG..............................................................3212.002.002.00-----------------------------------------
.......................................................................................................................................................................TTCTTTTTTATTTATATTTTG..............................................................2122.002.001.000.50-0.50--------------------------------------
...............................TGAACAACAACAGAATATGCC......................................................................................................................................................................................................212.000.00-----------------------1.001.00-----------------
.............................................................................................................................................................CTTTTTCTTTTTCTTTTTTATTTATATTTTG..............................................................3112.002.00---2.00--------------------------------------
...........................TTAGTGAACAACAACAGAATATGC.......................................................................................................................................................................................................242.000.00---------2.00--------------------------------
...........................................................................................................................................................TTCTTTTTCTTTTTCTAGCC...........................................................................202.000.00----2.00-------------------------------------
..................................................GTACGTGTCTGTAGGGGAAAGTAATTTTT...........................................................................................................................................................................2912.002.00----------2.00-------------------------------
..............................................................................................................................................................TTTTTCTTTTTCTTTTTTATTTATATTTTG..............................................................3012.002.00-----2.00------------------------------------
...............................................................................................................................................................TTTTCTTTTTCTTTTTTATTTATATTTTG..............................................................2912.002.001.00-1.00---------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTATTG........................................................................282.000.00-1.00--1.00-------------------------------------
.........................TGTTAGTGAACAACAACAGA.............................................................................................................................................................................................................2012.002.00----------------2.00-------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTCAG.........................................................................272.000.00---1.001.00-------------------------------------
..................................................GTACGTGTCTGTAGGG........................................................................................................................................................................................1612.002.00---------1.00-------------------1.00------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTCTAC.........................................................................272.000.00----2.00-------------------------------------
.........................................................................................................................................................................................................TCCATAATGGAAGCCACATT.............................2012.002.00------------2.00-----------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTCCTA......................................................................272.000.00-1.001.00---------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTATTTCTA...................................................................312.000.00-2.00----------------------------------------
..............................................................................................GTTGCAGTGTTTCCTGAAGAAGTTGT..................................................................................................................................2612.002.00--------------2.00---------------------------
..................................................................................................................................................................TCTTTTTCTTTTTTATAATC....................................................................201.000.00--------1.00---------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTCGGC......................................................................281.000.00----1.00-------------------------------------
..................................................................................................................................................TGTTTCTTTTTCTTTTTCTTTTTCCT..............................................................................261.000.00----1.00-------------------------------------
.................................................................................................................................................................................................ATATTTTTTCCATAACCA.......................................181.000.00-----------1.00------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTTACG.......................................................................281.000.00-1.00----------------------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTACGGC.....................................................................281.000.00----1.00-------------------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTCGAG......................................................................271.000.00-----1.00------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTATTG........................................................................261.000.00--1.00---------------------------------------
..................................................GTACGTGTCTGTAGGGGAA.....................................................................................................................................................................................1911.001.00-----------------------------------1.00------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTATTTCTCC..................................................................311.000.00----1.00-------------------------------------
...........................TTAGTGAACAACAACAGAAT...........................................................................................................................................................................................................2011.001.00------------------1.00-----------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTGCTT........................................................................251.000.00----1.00-------------------------------------
........................................................................................................TTCCTGAAGAAGTTGCTGA...............................................................................................................................191.000.00---------------------1.00--------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTTTCTCT......................................................................301.000.00----1.00-------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTAGGG........................................................................261.000.00----1.00-------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTACCTG.....................................................................291.000.00----1.00-------------------------------------
....TGTTGAGAAGACTGAAAACA..................................................................................................................................................................................................................................2021.001.00-------------------------1.00----------------
..........................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTTATTTATATCTTG..............................................................341.000.00---1.00--------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTAATG........................................................................271.000.00---1.00--------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTCTCG.........................................................................291.000.00---1.00--------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTACG........................................................................271.000.00--1.00---------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTATG........................................................................301.000.00-1.00----------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTTCCG.......................................................................281.000.00--1.00---------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTAAG........................................................................301.000.00-1.00----------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTTACG.......................................................................311.000.00--1.00---------------------------------------
...............................................ATGGTACGTGTCTGTAGGGGA......................................................................................................................................................................................2111.001.00------------------------------1.00-----------
.................................................................................................................................................................TTCTTTTTCTTTTTTATTTATATTCTG..............................................................271.000.00---1.00--------------------------------------
..................................................................................................................................................TGTTTCTTTTTCTTTTTCTTTTTCTTTGCA..........................................................................301.000.00----1.00-------------------------------------
..........................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTTACA.......................................................................251.000.00----1.00-------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTTTGGC........................................................................291.000.00----1.00-------------------------------------
..........................................AGAATATGGTACGTGTCTGTAGGTGAA.....................................................................................................................................................................................271.000.00--------1.00---------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTCGAG......................................................................281.000.00-----1.00------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTCTAG.........................................................................261.000.00------1.00-----------------------------------
................................................................................................................................................................TTTCTTTTTCTTTTTTATTTATATTCTG..............................................................281.000.00---1.00--------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTATG...........................................................................271.000.00--1.00---------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTACTG.......................................................................311.000.00--1.00---------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTTGGTA.......................................................................291.000.00-----1.00------------------------------------
................................................................................................................................................................TTTCTTTTTCTTTTTTATTTATATGTG...............................................................271.000.00---1.00--------------------------------------
.............................................................................................................................................................CTTTTTCTTTTTCTTTTTTATTTTAG...................................................................261.000.00-1.00----------------------------------------
.............................................................................................................................................................CTTTTTCTTTTTCTTTTTTACG.......................................................................221.000.00----1.00-------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTGTC.........................................................................291.000.00----1.00-------------------------------------
...............................................................................................................................................ACATGTTTCTTTTTCTTTTAAT.....................................................................................221.000.00----1.00-------------------------------------
................TGAAAACATTGTTAGTGAACAACAACA...............................................................................................................................................................................................................2711.001.00---------------1.00--------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTAAG.........................................................................291.000.00----1.00-------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTCAT........................................................................301.000.00---1.00--------------------------------------
................................GAACAACAACAGAATATGGT......................................................................................................................................................................................................2011.001.00----------------------------1.00-------------
...........................................................................................................................................................TTCTTTTTCTTTTTCTTTTTTATTTCTG...................................................................281.000.00---1.00--------------------------------------
..................................................GTACGTGTCTGTAGGAT.......................................................................................................................................................................................171.000.00--------------------------------1.00---------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTCAAG.........................................................................271.000.001.00-----------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCCTGG............................................................................231.000.00----1.00-------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTTAAG........................................................................281.000.001.00-----------------------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTATTTCTG...................................................................301.000.00---1.00--------------------------------------
.................................................................................................................................................................TTCTTTTTCTTTTTTATTTAAAG..................................................................231.000.00--1.00---------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTAAG..........................................................................281.000.00-1.00----------------------------------------
..............................................................................................................................................................TTTTTCTTTTTCTTTTTTATTTAAAG..................................................................261.000.00--1.00---------------------------------------
...................................................................................................................................................................CTTTTTCTTTTTTATTTATTTAA................................................................231.000.00---1.00--------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTTATTTCTG...................................................................351.000.00--1.00---------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTAGGC...........................................................................231.000.00----1.00-------------------------------------
..................................................................................................CAGTGTTTCCTGAAGAAGTTGT..................................................................................................................................2211.001.00--------------------1.00---------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTTCTC.........................................................................281.000.00----1.00-------------------------------------
...........................................................................................................CTGAAGAAGTTGTAGCACGTGC.........................................................................................................................2211.001.00---------------------------------1.00--------
................................................................................................................................................................TTTCTTTTTCTTTTTTATTTATATTTT...............................................................2711.001.00-1.00----------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTACG.........................................................................291.000.00-----1.00------------------------------------
.........AGAAGACTGAAAACATTGTTAGTGAACA.....................................................................................................................................................................................................................2811.001.00-----------------1.00------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTCGG........................................................................271.000.00----1.00-------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCCG..............................................................................241.000.00--1.00---------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTCTA..........................................................................261.000.00-1.00----------------------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTATTTCCA...................................................................301.000.00--1.00---------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTATTTTG....................................................................301.000.00--1.00---------------------------------------
.............................................................TAGGGGAAAGTAATTTTTAT.........................................................................................................................................................................201.000.00--------------------------1.00---------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTGC...........................................................................271.000.00----1.00-------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTGTGG...........................................................................231.000.00----1.00-------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTGCGG........................................................................261.000.00----1.00-------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTGGCC.......................................................................281.000.00-----1.00------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTGG...........................................................................251.000.00----1.00-------------------------------------
....................................................................................................................................................................TTTTTCTTTTTTATTTATAAG.................................................................211.000.001.00-----------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTTTTCGG.......................................................................301.000.00----1.00-------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTAAAG.........................................................................281.000.00---1.00--------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCGCC.............................................................................241.000.00----1.00-------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTTCTTG......................................................................291.000.00---1.00--------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTAGCT........................................................................261.000.00-----1.00------------------------------------
..................................................................................................................................................................TCTTTTTCTTTTTTATTTATATCTCG..............................................................261.000.00--1.00---------------------------------------
..........................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTTATTTTAAG..................................................................301.000.00-1.00----------------------------------------
.............................................................................................................................................................CTTTTTCTTTTTCTTTTTTATTTATCAT.................................................................281.000.00--1.00---------------------------------------
................................................................................................................................................................TTTCTTTTTCTTTTTTATTTATATTTTT..............................................................2811.001.00---1.00--------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTGGTG........................................................................281.000.00----1.00-------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTCAG............................................................................251.000.00----1.00-------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTATTG...........................................................................261.000.00--1.00---------------------------------------
...............................................................................................................................................ACATGTTTCTTTTTCTTTTTCTTTTTCATTT............................................................................311.000.00----1.00-------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTCTTG........................................................................301.000.00--1.00---------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTCTTG.........................................................................291.000.00---1.00--------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTCTC.......................................................................271.000.00----1.00-------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTTATTTCTG...................................................................321.000.001.00-----------------------------------------
...........AAGACTGAAAACATTGTTAGTGAACAACA..................................................................................................................................................................................................................2911.001.00-------------------1.00----------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTCCGT......................................................................271.000.00-----1.00------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTAG.............................................................................251.000.00--1.00---------------------------------------
...................................................................................................................................................GTTTCTTTTTCTTTTTCTTTTTCTTG.............................................................................261.000.00----1.00-------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTCCTA.......................................................................281.000.00---1.00--------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTATTG..........................................................................281.000.00--1.00---------------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTCACT........................................................................271.000.00----1.00-------------------------------------
................................................................................................................................................................TTTCTTTTTCTTTTTTATTTATATTTG...............................................................271.000.00---1.00--------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTCG...........................................................................271.000.00--1.00---------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTGGTT......................................................................281.000.00----1.00-------------------------------------
.............................AGTGAACAACAACAGAATA..........................................................................................................................................................................................................1911.001.00----------------------------------1.00-------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTCTAG........................................................................271.000.00--1.00---------------------------------------
.......TGAGAAGACTGAAAACATTGTTAGTGAA.......................................................................................................................................................................................................................2811.001.00---------------1.00--------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTAAAA..........................................................................281.000.00---1.00--------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTTTTTTCGC.......................................................................271.000.00----1.00-------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTTGGCC.......................................................................291.000.00----1.00-------------------------------------
................TGAAAACATTGTTAGTGAACA.....................................................................................................................................................................................................................2111.001.00-----------------1.00------------------------
......................................................................................................................................................................TTTCTTTTTTATTTATATCTTG..............................................................221.000.00--1.00---------------------------------------
............................TAGTGAACAACAACAGAAT...........................................................................................................................................................................................................1911.001.00--------1.00---------------------------------
................................................................................................................................................................TTTCTTTTTCTTTTTTATTTATATGTTG..............................................................281.000.001.00-----------------------------------------
...............................................................................................................................................ACATGTTTCTTTTTCTTTTTCTTTTTCTTTC............................................................................3111.002.00----1.00-------------------------------------
..................................................................................................................................................TGTTTCTTTTTCTTTTTCTTTTTCC...............................................................................251.000.00-----1.00------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTCTCG........................................................................301.000.00----1.00-------------------------------------
.......TGAGAAGACTGAAAACTCTG...............................................................................................................................................................................................................................201.000.00-------------------------------1.00----------
.............................................................................................................................................................CTTTTTCTTTTTCTTTTTTATTTATATTTTT..............................................................311.000.00---1.00--------------------------------------
......................................................................................................................................................TCTTTTTCTTTTTCTTTTTCTTTTTTCCG.......................................................................291.000.00----1.00-------------------------------------
..........GAAGACTGAAAACATTGTTAGTGA........................................................................................................................................................................................................................2411.001.00----------------------1.00-------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTTTTCAG.......................................................................301.000.00--1.00---------------------------------------
...............................................................................................................................................................TTTTCTTTTTCTTTTTTATTTTACC..................................................................251.000.00-----1.00------------------------------------
...................................................................................................................................................GTTTCTTTTTCTTTTTCTTTTTCTTTTTTAAAG......................................................................331.000.00------1.00-----------------------------------
.......................................................................................................................................................CTTTTTCTTTTTCTTTTTCTTTTTCCG........................................................................271.000.00---1.00--------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTCCTT.........................................................................281.000.00----1.00-------------------------------------
........................................................................................................................................................TTTTTCTTTTTCTTTTTCTAAAG...........................................................................231.000.00--1.00---------------------------------------
......................................................................................................................................................................TTTCTTTTTTATTTATATTCTG..............................................................221.000.00--1.00---------------------------------------
.........................................................................................................................................................TTTTCTTTTTCTTTTTCTTTTTTCTC.......................................................................261.000.00----1.00-------------------------------------
..............................................................................................................................................................TTTTTCTTTTTCTTTTTTATATG.....................................................................231.000.00--1.00---------------------------------------
..............................GTGAACAACAACAGAAT...........................................................................................................................................................................................................1730.670.67-------0.67----------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTTAT........................................................................3050.600.60---0.40--0.20-----------------------------------
....................AACATTGTTAGTGAACA.....................................................................................................................................................................................................................1720.500.50---------------------------------------0.50--
...............................................................................................................................................ACATGTTTCTTTTTCTTTTTC......................................................................................2120.500.50-----0.50------------------------------------
......TTGAGAAGACTGAAAACATT................................................................................................................................................................................................................................2020.500.50---------------------------0.50--------------
......................................................................................................................................................................TTTCTTTTTTATTTATATTTTG..............................................................2220.500.50---0.50--------------------------------------
..TTTGTTGAGAAGACTGAAAACA..................................................................................................................................................................................................................................2220.500.50--------------------------------------0.50---
......TTGAGAAGACTGAAAACAT.................................................................................................................................................................................................................................1920.500.50------------------------------------0.50-----
........GAGAAGACTGAAAACATTG...............................................................................................................................................................................................................................1920.500.50-------------------------------------0.50----
..TTTGTTGAGAAGACTGAAAACATTGTTA............................................................................................................................................................................................................................2820.500.50----------------------------------------0.50-
.........AGAAGACTGAAAACATTGTT.............................................................................................................................................................................................................................2020.500.50---------------------------0.50--------------
...............................TGAACAACAACAGAAT...........................................................................................................................................................................................................1650.400.40--------0.20---------------------------0.20-----
........GAGAAGACTGAAAACAT.................................................................................................................................................................................................................................1730.330.33-----------------------------------------0.33
......................................................................................................................................................................TTTCTTTTTTATTTATATTTT...............................................................2150.200.20-0.20----------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTTTTAT........................................................................2950.200.20--0.20---------------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTTATC.......................................................................3150.200.60----0.20-------------------------------------
...........................................................................................................................................................................TTTTTATTTATATTTTGAA............................................................1950.200.20------0.20-----------------------------------
....................................................................................................................................................TTTCTTTTTCTTTTTCTTTTTCTTTTTTATG.......................................................................3150.200.600.20-----------------------------------------
.....................................................................................................................................................TTCTTTTTCTTTTTCTTTTTCTTTTTTATG.......................................................................3050.200.200.20-----------------------------------------
.......................................................................................................................................................................TTCTTTTTTATTTATATTT................................................................1990.110.11------0.11-----------------------------------

Antisense strand
CCTTTGTTGAGAAGACTGAAAACATTGTTAGTGAACAACAACAGAATATGGTACGTGTCTGTAGGGGAAAGTAATTTTTTCCCCTAGAGTAAATGTTGCAGTGTTTCCTGAAGAAGTTGTAGCACGTGCTACTGGTTAAACCTACATGTTTCTTTTTCTTTTTCTTTTTCTTTTTTATTTATATTTTGAAAAAATATTTTTTCCATAATGGAAGCCACATTCAATACATGTTTTTTCTTAAAATGAGAAA
..................................................((((((..((.((((((((((.....)))))))))).))...)))).))..........(((((((..(((((....))))).((.....)).........)))))))............................................................................................
..................................................51..................................................................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM956925PAZD5SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
.......................................................................................................................................................................................................................CACATTCAATACATGTTTTG............... 201.000.00------1.00-----------------------------------
..........................................................................................................................................................................TTTTTTATTTATATTTTGAACCAG........................................................ 241.000.00-----------1.00------------------------------