ID: uc002bns.3_intron_15_0_chr15_89870295_r
GENE: (7)
chr15:89870245-89870447-


(1)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(2)
BREAST 		(10)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(6)
HELA 		(3)
LIVER 		(1)
OTHER 		(19)
SKIN 		(1)
XRN.ip

Sense strand
TCGTTGATGGATCTGGCCAATGATGCCTGCCAGCTGCTCTCAGGAGAGAGGTAGCCAGGCCTTGGGTGGGCAGGATCTAGGCAGGGGACTGGCAGGTGGGCGGCCTAGCCTTCGGCTTAGCCTTAGCCCTGCCCTAGTGGACTGGCTCTGTAGGTACAAAGAAGACCCCTGGCTCTGGGACCTGGAGTGGGACCTGCAAGAAT
....................................................((((((.((..(((((((((((..((((((....((..(((((((.....)))).))).)).)))))))))..)))).))))....)).))))))........................................................
..................................................51....................................................................................................153................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTAGCCAGGCCTTGGGTGGGCAGGATCTAGGCAGGGGACTGGCAGGTGGGCGGCCTAGCCTTCGGCTTAGCCTTAGCCCTGCCCTAGTGGACTGGCTCTGTAG..................................................10318.008.004.00---3.00-------------------------------------1.00------
.........................................................................................TGGCAGGTGGGCGGCCTAGCCTTCGGCTTAGCCTTAGCCCTGCCCTAGTGGACTGGCTCTGTAGT.................................................656.000.006.00------------------------------------------------
.................................................................................................................................TGCCCTAGTGGACTGGCTCTGTAG..................................................2415.005.00----------------2.00-1.00--1.00--------1.00------------------
............................................................................................................................................ACTGGCTCTGTAGGTACAAAGAAGACCCCTG................................3113.003.00------3.00------------------------------------------
........................................................................................................................CCTTAGCCCTGCCCTAGTGGACTGGCTCTG.....................................................3013.003.00--3.00----------------------------------------------
...................................................................................................................................CCCTAGTGGACTGGCTCTGTAG..................................................2213.003.00-----1.00--1.00--------------------------------1.00-------
.................................................................................................................................................................AAGACCCCTGGCTCTGGGACCGG...................232.000.00---2.00---------------------------------------------
..................................................................................................................................GCCCTAGTGGACTGGCTCTGTAG..................................................2312.002.00----------------------------1.00----------1.00---------
.................................................................................................................................TGCCCTAGTGGACTGGCTCTGTA...................................................2312.002.00----------------------------------------1.00--1.00-----
.................................................................................................................................TGCCCTAGTGGACTGGCTCTGTAGAAA...............................................2712.005.00--------------2.00----------------------------------
......................................................................................................................................TAGTGGACTGGCTCTGTAG..................................................1912.002.00-----------1.00-------1.00-----------------------------
..................................................................................................................................................................................GACCTGGAGTGGGACCGTG......192.000.00-2.00-----------------------------------------------
...................................................................................................................CTTAGCCTTAGCCCTGCCCTAGTGGACTGGCTCTG.....................................................3512.002.00---------------2.00---------------------------------
...............................................................................................................................................................AGAAGACCCCTGGCTCTGGGACCT....................2412.002.00-----------------1.00-------1.00-----------------------
.....................................................................................................................................CTAGTGGACTGGCTCTGTAGTTT...............................................232.000.00-------2.00-----------------------------------------
......................................................................................................................................TAGTGGACTGGCTCTGTAGAA................................................2111.002.00---------1.00---------------------------------------
..........................................................................................................................TTAGCCCTGCCCTAGTGGACTGGCTCTGTAGA.................................................321.000.00---------------------------------------------1.00---
..................................................GTAGCCAGGCCTTGGGTGGGCAGGA................................................................................................................................2511.001.00----------1.00--------------------------------------
........................................................................................................................CCTTAGCCCTGCCCTAGTGGACTGGCTCT......................................................2911.001.00--1.00----------------------------------------------
..................................................................................................................................................................AGACCCCTGGCTCTGGGACCTGGAGCGGG............291.000.00---1.00---------------------------------------------
..................................................................................................................................................................AGACCCCTGGCTCTGGGACCTGGAGTGG.............2811.001.00-----------------------------1.00-------------------
....................................................................................................................................................................ACCCCTGGCTCTGGGACCTGGAGTGGGACCCG.......321.000.00-1.00-----------------------------------------------
...............................................................................................................................................................................TGGGACCTGGAGTGGGAC..........1811.001.00-------------1.00-----------------------------------
........................................................................................................................................GTGGACTGGCTCTGTAGGTACAAAG..........................................2511.001.00------------------1.00------------------------------
.......................................................................................................................................................................CCTGGCTCTGGGACCTGGAGTGGGAC..........2611.001.00--------------------1.00----------------------------
...............................................................................................................................................................AGAAGACCCCTGGCTCTGGGATA.....................231.000.00-----------------1.00-------------------------------
..................................................................................................................................GCCCTAGTGGACTGGCTCTG.....................................................2011.001.00---------1.00---------------------------------------
.......................................................................................................................................AGTGGACTGGCTCTGTAGA.................................................1911.001.00-----1.00-------------------------------------------
......................................................................................................................................TAGTGGACTGGCTCTGT....................................................1721.001.00--------------------0.50---------------------------0.50
.........................................................................................................................................................................................AGTGGGACCTGCAAGAATCTA211.000.00-1.00-----------------------------------------------
..........................................................................................................................................................................GGCTCTGGGACCTGGAG................1711.001.00-------------1.00-----------------------------------
.............................................................................................................................................................AAAGAAGACCCCTGGCTCTG..........................2011.001.00-----------------------------------1.00-------------
...........................................................................................................................................................ACAAAGAAGACCCCTGGCTCTG..........................2211.001.00------------------------------------1.00------------
.......................................................................................................................................AGTGGACTGGCTCTGTAG..................................................1811.001.00-----1.00-------------------------------------------
...............................................................................................................................CCTGCCCTAGTGGACTGGCTCTGTTT..................................................261.000.00-------------------------------------1.00-----------
........................................................AGGCCTTGGGTGGGCAGGATCCAGG..........................................................................................................................251.000.00-1.00-----------------------------------------------
...................................................TAGCCAGGCCTTGGGTGGGCAGGA................................................................................................................................2411.001.00--------------------------------------------1.00----
.................................................................................................................................................................AAGACCCCTGGCTCTGGGACCTGGAGTGGGAC..........3211.001.00-------1.00-----------------------------------------
........................................................................................................................................GTGGACTGGCTCTGTAG..................................................1711.001.00---------------------------1.00---------------------
.........................................................................................................................................TGGACTGGCTCTGTAG..................................................1611.001.00--------------------------1.00----------------------
.................................................................................................................................TGCCCTAGTGGACTGGCTCTGT....................................................2211.001.00----------------------1.00--------------------------
..GTTGATGGATCTGGCCAATGATGC.................................................................................................................................................................................2411.001.00----------------------------------1.00--------------
..................................................................................................................................GCCCTAGTGGACTGGCTCTGTA...................................................2211.001.00------------------------1.00------------------------
...........................................................................................................................................GACTGGCTCTGTAGGTA...............................................1711.001.00--------------------------------1.00----------------
...................................................TAGCCAGGCCTTGGGTGGGCAGGATCTA............................................................................................................................2811.001.00-------------------------------1.00-----------------
...................................................................................GGGGACTGGCAGGTGGGTTTA...................................................................................................211.000.00------------1.00------------------------------------
......................................................................CAGGATCTAGGCAGGGGACT.................................................................................................................2011.001.00---------------------------------1.00---------------
........................................................................................................................................GTGGACTGGCTCTGTAGAAAA..............................................2111.001.00-----------------------1.00-------------------------
......................................................................................................................................................................................TGGAGTGGGACCTGCAAG...1811.001.00-----------1.00-------------------------------------
.........................................................................................TGGCAGGTGGGCGGCCTAGCCTTCGGCTTAGCCTTAGCCCTGCCCTAGTGGACTGGCTCTGTAGGTTTTC............................................701.000.00----1.00--------------------------------------------
...............................................................................................................................................................AGAAGACCCCTGGCTCTGGGACCCGG..................261.000.00-1.00-----------------------------------------------
......................................................................................................................................TAGTGGACTGGCTCTGTAGAAGA..............................................2311.002.00----------------------------------------------1.00--
.........................................................................................................................................................GTACAAAGAAGACCCCTGGCTCTGG.........................2511.001.00----------1.00--------------------------------------
.................................................................................................................................................................AAGACCCCTGGCTCTGGGACCCGG..................241.000.00-1.00-----------------------------------------------
...TTGATGGATCTGGCCAATGATGCCCG..............................................................................................................................................................................261.000.00--------1.00----------------------------------------
........................................................................................................................CCTTAGCCCTGCCCTAG..................................................................1711.001.00--1.00----------------------------------------------
..........................................................................................................................................GGACTGGCTCTGTAGGTACAAAGAAGACCC...................................3011.001.00--------------------------------------1.00----------
.......................................................................................................................................AGTGGACTGGCTCTGTA...................................................1720.500.50-------------------0.50-----------------------------
....................................................................................................................................CCTAGTGGACTGGCTCTGT....................................................1920.500.50-----------------------------------------------0.50-
......................................................................................................................................TAGTGGACTGGCTCTG.....................................................1630.330.33---------------------0.33---------------------------

Antisense strand
TCGTTGATGGATCTGGCCAATGATGCCTGCCAGCTGCTCTCAGGAGAGAGGTAGCCAGGCCTTGGGTGGGCAGGATCTAGGCAGGGGACTGGCAGGTGGGCGGCCTAGCCTTCGGCTTAGCCTTAGCCCTGCCCTAGTGGACTGGCTCTGTAGGTACAAAGAAGACCCCTGGCTCTGGGACCTGGAGTGGGACCTGCAAGAAT
....................................................((((((.((..(((((((((((..((((((....((..(((((((.....)))).))).)).)))))))))..)))).))))....)).))))))........................................................
..................................................51....................................................................................................153................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.......................TGCCTGCCAGCTGCTCTGGAG............................................................................................................................................................... 211.000.00---1.00---------------------------------------------
...............................................GAGGTAGCCAGGCCTTGATTT....................................................................................................................................... 211.000.00------------1.00------------------------------------