| (2) B-CELL | (4) CELL-LINE | (1) CERVIX | (2) HEART | (5) HELA | (2) OTHER | (1) SKIN |
| ACAAACCCTTCATTACTTATTGTCTGGGAAGCTTAGGAGCTTTGGAGGAGAGGAATAAGGAAGCTTGTGTCTTGGCTTCTCTGTGAATTTTGTTTTTCCTCTTCAGTCAGAATGATGAGTCACACTCCATAGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAGTATCTCCAGGTGTGTCAGAGCTCCGGAGGAATTCCAAAAAATATGGAAAA .............................................................................................................................(((.((.....(((((((.......)))))))....))))).....((((((...((((((....))))))))))))................................................ ......................................................................................................................119....................................................................................206.......................................... | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | SRR189784 | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR189782 | SRR033729(GSM497074) splenic MZL (Splenic414). (B cell) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR040015(GSM532900) G623T. (cervix) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................AGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 70 | 1 | 32.00 | 32.00 | 11.00 | 17.00 | 1.00 | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................ATAGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 72 | 1 | 20.00 | 20.00 | 18.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................GGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 69 | 1 | 18.00 | 18.00 | 9.00 | 8.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................CTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 63 | 1 | 14.00 | 14.00 | 2.00 | 11.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 62 | 1 | 13.00 | 13.00 | 12.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................CATAGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 73 | 1 | 11.00 | 11.00 | 5.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................TAGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAGA................................................. | 72 | 10.00 | 0.00 | - | 8.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................TAGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAGT................................................. | 72 | 1 | 8.00 | 8.00 | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................TAGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAGTT................................................ | 73 | 1 | 8.00 | 8.00 | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................CTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 67 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................CAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 57 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 66 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................CTCCATAGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 76 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 50 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................TTGTCTGGGAAGCTTAGGAGCTCTGG............................................................................................................................................................................................................. | 26 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................TGGGAAGCTTAGGAGCTTTGGAGGAGAGG..................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................AGAGCTCCGGAGGAATTCCAAA............ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............ACTTATTGTCTGGGAAGCTTAGGAGC.................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................ATGAGTCACACTCCATAGGCTCACTGCAGCAG........................................................................................................ | 32 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................AGAGCTCCGGAGGAATTC................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................ATTGTCTGGGAAGCTTAGGAG................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................CAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAG.................................................. | 60 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAGA................................................. | 63 | 1 | 1.00 | 13.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................ACTCCATAGGCTCACTGCAGCAG........................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................AGGAATCTTTTTTTATTTTTT................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .................................................................................................................................................................................................TTATTAGTATCTCCAGGGGT..................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ............................................................................................................................................................................................TTTTTTTATTAGTATCTTTCC......................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................ACACTCCATAGGCTCACTGCAGCAGTCACTTG................................................................................................. | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................AGGCTCACTGCAGCAGTCACTTGTAGCTTC.......................................................................................... | 30 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................ATTGTCTGGGAAGCTTAGGAGCTCCGG............................................................................................................................................................................................................. | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................GTTTTTCCTCTTCAGCG.............................................................................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ..............................................................................................TTTCCTCTTCAGTCAG............................................................................................................................................ | 16 | 9 | 0.22 | 0.22 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.22 | - | - |
| ...................................................................................TGAATTTTGTTTTTCCT...................................................................................................................................................... | 17 | 7 | 0.14 | 0.14 | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - |
| ACAAACCCTTCATTACTTATTGTCTGGGAAGCTTAGGAGCTTTGGAGGAGAGGAATAAGGAAGCTTGTGTCTTGGCTTCTCTGTGAATTTTGTTTTTCCTCTTCAGTCAGAATGATGAGTCACACTCCATAGGCTCACTGCAGCAGTCACTTGTAGTTTCATAGGACAGTCTACTAAATCTAGGAATCTTTTTTTATTAGTATCTCCAGGTGTGTCAGAGCTCCGGAGGAATTCCAAAAAATATGGAAAA .............................................................................................................................(((.((.....(((((((.......)))))))....))))).....((((((...((((((....))))))))))))................................................ ......................................................................................................................119....................................................................................206.......................................... | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | SRR189784 | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR189782 | SRR033729(GSM497074) splenic MZL (Splenic414). (B cell) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR040015(GSM532900) G623T. (cervix) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................TTTTCCTCTTCAGTCAGGAA......................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ....................................................................................................................................................ACTTGTAGTTTCATAAACG................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................TCCATATTTTTTGGAATTCCTCCGGAGCTCTG... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................TTTTCCATATTTTTTGG | 17 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - |
| ...............................................................................................TCTGACTGAAGAGGAA........................................................................................................................................... | 16 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |