ID: uc002bhl.2_intron_5_0_chr15_82808796_f.3p
GENE: LOC440295(6)
chr15:83192863-83193112+


(1)
AGO2.ip
(2)
B-CELL
(6)
BREAST
(7)
CELL-LINE
(6)
CERVIX
(4)
LIVER
(3)
OTHER
(10)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGAGGCTGTGTGAACAGGAGGAGAGGCTACGTGAACATGAGGAGAGGCTGTGTGAACAGGAGGAGAGGCTATGTGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGAGGCTGTGTGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGAGGCTGTGTGAACAGGAGAAGCTGCCAGGGCAGGAGAGGCTGCTGGAAGAGGTGGAGAAGCTGTTAGAACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCT
..................................................(((..(((..((......)).)))..)))...............................((((....))))................................................................................................................................
..................................................51...........................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040037(GSM532922)
G243T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038857(GSM458540)
D20. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532880(GSM532880)
G659T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
TAX577742(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040027(GSM532912)
G220T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................GGAGGAGAGGCTGTGTGAACACTG..............................................................................................................................248.000.00---4.00-4.00------------------------------------
...................................................................................................................TGAACAGGAGGAGAGGCTACGTAAAA.............................................................................................................266.000.006.00-----------------------------------------
....................................................TGAACAGGAGGAGAGGGAA...................................................................................................................................................................................196.000.00--6.00---------------------------------------
..............................................................................................TGAACAGGAGGAGAGGCTGTGTGAACACTG..............................................................................................................................304.000.00---------------2.00-2.00------------------------
........TGTGAACAGGAGGAGAGGCTAAGCC.........................................................................................................................................................................................................................254.000.00-4.00----------------------------------------
.......................................................................TGTGAACAGGAGGAGAGGCCACG............................................................................................................................................................234.000.00----4.00-------------------------------------
................................................................................GAGGAGAGGCTACGTGAAGA......................................................................................................................................................203.000.00-------3.00----------------------------------
...........................................................................AACAGGAGGAGAGGCTACGCG..........................................................................................................................................................213.000.00-3.00----------------------------------------
..........TGAACAGGAGGAGAGGCTACGTGAAAA.....................................................................................................................................................................................................................273.000.003.00-----------------------------------------
..........................................................................................................GAGGCTGTGTGAACAGGAGGAGAGGCTTT...................................................................................................................293.000.003.00-----------------------------------------
..........................................................................................................GAGGCTGTGTGAACAGGAGGAGAGGCTAA...................................................................................................................293.000.003.00-----------------------------------------
.GAGGCTGTGTGAACAGGAGGAGCGG................................................................................................................................................................................................................................253.000.00------3.00-----------------------------------
..................................................................................................................................................................................................................TGTTAGAACAGGAGAGGCGGCAAGAG..............263.000.003.00-----------------------------------------
..........................................AGAGGCTGTGTGAACAGGAGGAGAGT......................................................................................................................................................................................263.000.003.00-----------------------------------------
.........................................................................TGAACAGGAGGAGAGGCTACGTGAACT......................................................................................................................................................273.000.003.00-----------------------------------------
.........................................................................TGAACAGGAGGAGAGGCTACGTAAC........................................................................................................................................................253.000.003.00-----------------------------------------
..............................................................................................TGAACAGGAGGAGAGGCTGTGTTAAC..................................................................................................................................262.000.002.00-----------------------------------------
................................................................................................AACAGGAGGAGAGGCTGTGGGG....................................................................................................................................222.000.00----------2.00-------------------------------
..............................................................................................TGAACAGGAGGAGAGGCTGTGTGAGC..................................................................................................................................262.000.002.00-----------------------------------------
.........................................................................................................................................................................................AGGCTGCTGGAAGAGAAGG..............................................192.000.00---------------------1.00--------1.00-----------
....................................................................................................GGAGGAGAGGCTGTGTGTA...................................................................................................................................192.000.00-----------2.00------------------------------
..............................................................................................TGAACAGGAGGAGAGGCTGTGTGAACAGGAT.............................................................................................................................312.000.002.00-----------------------------------------
......................................GAGGAGAGGCTGTGTGAACAGGAGGAGAA.......................................................................................................................................................................................292.000.002.00-----------------------------------------
.................................................................................................ACAGGAGGAGAGGCTGTGTGT....................................................................................................................................212.000.00-------------2.00----------------------------
..............................................................................................TGAACAGGAGGAGAGGCTGTGTA.....................................................................................................................................232.000.002.00-----------------------------------------
....................................................................................................GGAGGAGAGGCTGTGTGGATA.................................................................................................................................212.000.00---------2.00--------------------------------
..........................................................................................TACGTGAACAGGAGGAGAGGCAT.........................................................................................................................................232.000.002.00-----------------------------------------
...............................................................................................GAACAGGAGGAGAGGCTGGGGG.....................................................................................................................................222.000.00----------------2.00-------------------------
.................................................................................................ACAGGAGGAGAGGCTGTGTGTACA.................................................................................................................................242.000.00------------------2.00-----------------------
..............................................................................................TGAACAGGAGGAGAGGCTGTGTGAAT..................................................................................................................................262.000.002.00-----------------------------------------
..............................................................................................................................AGAGGCTACGTGAACAGGAGGAGAGGCTGTGGGAA.........................................................................................352.000.00--------2.00---------------------------------
..........................................................................................TACGTGAACAGGAGGAGAGGCC..........................................................................................................................................222.000.002.00-----------------------------------------
................................................................................................AACAGGAGGAGAGGCTGGGTG.....................................................................................................................................212.000.00--------------------2.00---------------------
................................................................................................AACAGGAGGAGAGGCTGTGTGT....................................................................................................................................222.000.00------------2.00-----------------------------
...............................................................................................................................................................................................CTGGAAGAGGTGGAGAAGCTGTTAGAACTTT............................311.000.001.00-----------------------------------------
..........................................................................................................................................................................................................................CAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTTT341.000.00-------------------1.00----------------------
...............................................................................................................................................................................................................AGCTGTTAGAACAGGAGAGTGC.....................221.000.001.00-----------------------------------------
.........................................................................................................................................................................................................................ACAGGAGAGGCGGCAGGAGGG............211.000.00-----------------------------------1.00------
.............................................................................................................................................................................................................GAAGCTGTTAGAACAGGAGAGGCGGCG..................271.000.001.00-----------------------------------------
.....................................TGAGGAGAGGCTGTGTCGGT.................................................................................................................................................................................................201.000.00----------------------------1.00-------------
..............................................................................................................................................................................................GCTGGAAGAGGTGGAGAAGCTGGTA...................................251.000.00----------------------------------1.00-------
...........................................................................................................................................................................................................GAGAAGCTGTTAGAACAGGAGAGGCGGCG..................291.000.001.00-----------------------------------------
.............................................................................................................................................................TGAACAGGAGAAGCTGCCAGGGCAGT...................................................................261.000.001.00-----------------------------------------
...........................................................................................................................................................................................................GAGAAGCTGTTAGAACAGGAGAGGCGTT...................281.000.001.00-----------------------------------------
.........................................................................................................................................................................................................TGGAGAAGCTGTTAGAACAGGAGAGGCGAAA..................311.000.001.00-----------------------------------------
..................................................................................................................................................................AGGAGAAGCTGCCAGGGCAGGAGAGGCTGGGGG.......................................................331.000.001.00-----------------------------------------
............................................................................................................................................................................................................................GGAGAGGCGGCAGGAATA............181.000.00-------------------------1.00----------------
.....................................................................................................................................................................................................................................GCAGGAGGAGCAGGAGGCA..191.000.00---------------------------------1.00--------
...............................TGAACATGAGGAGAGGCTTGAA.....................................................................................................................................................................................................221.000.001.00-----------------------------------------
.............................................................................................................................................................................................................GAAGCTGTTAGAACAGGAGAGGCGT....................251.000.001.00-----------------------------------------
..........................................................GGAGGAGAGGCTATGTTGCT............................................................................................................................................................................201.000.00--------------------------1.00---------------
..........................................................................................................................................................................................................................CAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTAA341.000.00-----------------------------1.00------------
................................................................................................................................................AGGAGAGGCTGTGTGAACAGGAGAAGCCGG............................................................................301.000.00-------------------1.00----------------------
.....................................................................................................................................................................................................................................GCAGGAGGAGCAGGAGGCGC.201.000.00---------------------------1.00--------------
............................................................................................................................................................................................................AGAAGCTGTTAGAACAGGAGAGGCAGT...................271.000.001.00-----------------------------------------
...............................TGAACATGAGGAGAGGCTGTCAAC...................................................................................................................................................................................................241.000.001.00-----------------------------------------
..............................................................................................................................................................................................GCTGGAAGAGGTGGAGAAT.........................................191.000.00------------------------1.00-----------------
.......................................................................................................................................................................................AGAGGCTGCTGGAAGACG.................................................181.000.00----------------------1.00-------------------
.........................................................................................................................................................................................................TGGAGAAGCTGTTAGAACAGGAGAGGA......................271.000.001.00-----------------------------------------
..................................................................................................................................................................................................................TGTTAGAACAGGAGAGGCGGCAGTAGG.............271.000.001.00-----------------------------------------
..............................................................................................................................................................................................................................AGAGGCGGCAGGAGGGGTG.........191.000.00--------------------------------1.00---------
.........................................................................................................................................................................................................TGGAGAAGCTGTTAGAACACTG...........................221.000.00---1.00--------------------------------------
..................................................................................................................................................................................................................TGTTAGAACAGGAGAGGCGGCAGGAGC.............271.000.001.00-----------------------------------------
.......................................................................................................................................................................AAGCTGCCAGGGCAGGACTGT..............................................................211.000.00--------------1.00---------------------------
.......................................................................................................................................................................AAGCTGCCAGGGCAGGACCG...............................................................201.000.00--------------1.00---------------------------
...............................TGAACATGAGGAGAGGCTGTGTGAAC.................................................................................................................................................................................................2670.570.570.57-----------------------------------------
...........................TACGTGAACATGAGGAGAGGCTGTGT.....................................................................................................................................................................................................2660.500.500.50-----------------------------------------
...............................TGAACATGAGGAGAGGCTGTGTGAACAGGA.............................................................................................................................................................................................3070.430.430.43-----------------------------------------
..................................ACATGAGGAGAGGCTGTGTGA...................................................................................................................................................................................................2170.430.43------------------------------------0.43-----
...................................CATGAGGAGAGGCTGTGTG....................................................................................................................................................................................................1980.380.38-------------------------------------0.38----
.....................................TGAGGAGAGGCTGTGTGAACAGGAGG...........................................................................................................................................................................................2670.290.290.29-----------------------------------------
.....................................................................TATGTGAACAGGAGGAGAGGCTACGT...........................................................................................................................................................2640.250.250.25-----------------------------------------
....................................................TGAACAGGAGGAGAGGCTATGTGAAC............................................................................................................................................................................2680.250.250.25-----------------------------------------
.................GAGGAGAGGCTACGTGAACATGAGGAGAGGCT.........................................................................................................................................................................................................3260.170.17----------------------------------------0.17-
...........................TACGTGAACATGAGGAGAGGCTGT.......................................................................................................................................................................................................2460.170.170.17-----------------------------------------
..............................................................GAGAGGCTATGTGAACAGGAGGAGAGGCTA..............................................................................................................................................................3060.170.17--------------------------------------0.17---
.......................AGGCTACGTGAACATGAGG................................................................................................................................................................................................................1960.170.17---------------------------------------0.17--
...............................TGAACATGAGGAGAGGCTGTGTGAACAGG..............................................................................................................................................................................................2970.140.140.14-----------------------------------------
...............................TGAACATGAGGAGAGGCTGTGTGA...................................................................................................................................................................................................2470.140.140.14-----------------------------------------
.....................................TGAGGAGAGGCTGTGTGAACAGGA.............................................................................................................................................................................................2470.140.140.14-----------------------------------------
.................................AACATGAGGAGAGGCTGTGTGAAC.................................................................................................................................................................................................2470.140.140.14-----------------------------------------
.................................AACATGAGGAGAGGCTGTGTGAACAGGAG............................................................................................................................................................................................2970.140.14-----------------------------------------0.14
.....................................TGAGGAGAGGCTGTGTGAACAGGAGGT..........................................................................................................................................................................................2770.140.290.14-----------------------------------------
.................................AACATGAGGAGAGGCTGTGTGAACA................................................................................................................................................................................................2570.140.140.14-----------------------------------------

Antisense strand
AGAGGCTGTGTGAACAGGAGGAGAGGCTACGTGAACATGAGGAGAGGCTGTGTGAACAGGAGGAGAGGCTATGTGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGAGGCTGTGTGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGAGGCTGTGTGAACAGGAGAAGCTGCCAGGGCAGGAGAGGCTGCTGGAAGAGGTGGAGAAGCTGTTAGAACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCT
..................................................(((..(((..((......)).)))..)))...............................((((....))))................................................................................................................................
..................................................51...........................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040037(GSM532922)
G243T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038857(GSM458540)
D20. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532880(GSM532880)
G659T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
TAX577742(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040027(GSM532912)
G220T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................................TGCTGGAAGAGGTGGATTT.......................................... 191.000.00-----------------------1.00------------------
...................................................................................................................................................................................CAGGAGAGGCTGCTGTTTT.................................................... 191.000.00-------------------------------1.00----------
.........................................................................................................................................................................................................................ACAGGAGAGGCGGCAGGAGGAGCAGGAGACCT. 321.000.00-1.00----------------------------------------