ID: uc002bdp.2_intron_2_0_chr15_78635955_f.3p
GENE: CRABP1(3)
chr15:78640069-78640318+


(1)
BRAIN
(1)
BREAST
(4)
CELL-LINE
(5)
OTHER
(1)
SKIN

Sense strand
CTCTGGTTACCTCTTTACCAATAGCGCTTAAGGGGGAAAAAATATCCCTTAATGCTTAGCCTGAGCACACACACAGGAAATTGAATGTCTGTTACAAAGAGTTTTTAACAGGGCAATAAGTGGCCTTATTAGTGATATGCTTTAAACATTTTTGCACAGGCATCTGCACTGATTGGTTTTCCTTTTCTTCTTCTCTGCAGACGTTTGGCGCCGATGACGTGGTCTGCACCAGAATTTATGTCCGAGAGTG
...................................................................(((...(((....)))..(((((((((.((.....)).))))))).))....)))................................................................................................................................
...................................................................68......................................................124............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR343337SRR343336SRR343334SRR343335SRR189782SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
................................................TTAATGCTTAGCCTGTGTC.......................................................................................................................................................................................19669.0011.1751.8313.671.001.830.330.33------
................................................TTAATGCTTAGCCTGTGT........................................................................................................................................................................................18637.5011.1722.006.833.832.671.171.00------
................................................TTAATGCTTAGCCTG...........................................................................................................................................................................................15611.1711.17--3.505.001.830.83------
................................................TTAATGCTTAGCCTGTCCG.......................................................................................................................................................................................1967.8311.170.670.172.671.501.671.17------
................................................TTAATGCTTAGCCTGAGTCCG.....................................................................................................................................................................................215.000.003.00-2.00---------
................................................TTAATGCTTAGCCTGA..........................................................................................................................................................................................1644.004.00--0.751.751.250.25------
....................................................................................................................................................................................................................GATGACGTGGTCTGCA......................1611.001.00-------1.00----
.......................................................................................................TTTAACAGGGCAATACA..................................................................................................................................171.000.00------1.00-----
.................................................................................................................................................................................................................GCCGATGACGTGGTCTGCACCAGAAT...............2611.001.00---------1.00--
........................................................................ACAGGAAATTGAATGTATAG..............................................................................................................................................................201.000.00------1.00-----
................................................TTAATGCTTAGCCTGC..........................................................................................................................................................................................1661.0011.17--0.500.330.17-------
.......................................................................................................................................................................................................GACGTTTGGCGCCGATGAC................................1911.001.00--------1.00---
................................................TTAATGCTTAGCCTGTGTT.......................................................................................................................................................................................1960.6711.170.67-----------
................................................TTAATGCTTAGCCTGTCC........................................................................................................................................................................................1860.5011.17-0.170.17--0.17------
................................................TTAATGCTTAGCCTGTGAT.......................................................................................................................................................................................1960.1711.170.17-----------
................................................TTAATGCTTAGCCTGGCCG.......................................................................................................................................................................................1960.1711.17-----0.17------
................................................TTAATGCTTAGCCTGTGTA.......................................................................................................................................................................................1960.1711.170.17-----------

Antisense strand
CTCTGGTTACCTCTTTACCAATAGCGCTTAAGGGGGAAAAAATATCCCTTAATGCTTAGCCTGAGCACACACACAGGAAATTGAATGTCTGTTACAAAGAGTTTTTAACAGGGCAATAAGTGGCCTTATTAGTGATATGCTTTAAACATTTTTGCACAGGCATCTGCACTGATTGGTTTTCCTTTTCTTCTTCTCTGCAGACGTTTGGCGCCGATGACGTGGTCTGCACCAGAATTTATGTCCGAGAGTG
...................................................................(((...(((....)))..(((((((((.((.....)).))))))).))....)))................................................................................................................................
...................................................................68......................................................124............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR343337SRR343336SRR343334SRR343335SRR189782SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
............................................................................GAAATTGAATGTCTGAA............................................................................................................................................................. 171.000.00----------1.00-
................................................................................................................................................................................................................................TGCACCAGAATTTATATA........ 181.000.00-----1.00------
......................................................................................................TTTTAACAGGGCAATACTG................................................................................................................................. 191.000.00------1.00-----
..........................................................GTGTGTGTGCTCAGGC................................................................................................................................................................................ 1690.110.11-----------0.11