ID: uc002baf.2_intron_14_0_chr15_75653533_r
GENE: (11)
chr15:75653483-75653676-


(1)
AGO2.ip
(7)
B-CELL
(3)
BRAIN
(3)
BREAST
(18)
CELL-LINE
(4)
CERVIX
(4)
HEART
(1)
HELA
(6)
LIVER
(3)
OTHER
(15)
SKIN
(1)
UTERUS

Sense strand
TCCACTTCCCACCTGGCGACTCCTATGGGATGCAGGGCAGCGTGGAGGAGGTGAGGGGTCACCTAGGGTGGTGGGGTAGGGGCAGGCTGGAGAGGGCTGGCTTGTTCCAGGCTGATCCATGCTGGCCTGCCCTCACCTGTCTAGGTGCTGAAGACCGTGGCCAACAACCGGGACAAGGGGCGGGCCAACCACAG
..............................................................................((((((((((((...((..(((((((...)))))))..))...)))))))))))).............................................................
.............................................................................78................................................................144................................................
SizePerfect hitTotal NormPerfect NormSRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038861(GSM458544)
MM466. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR038859(GSM458542)
MM386. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR038860(GSM458543)
MM426. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
..................................................................................CAGGCTGGAGAGGGCTGGCTTGT.........................................................................................23119.0019.004.001.00-1.003.001.00-1.00-----1.00--1.00---------1.00----------1.001.00-----1.001.00-1.00---------------------
..........................................................................................................................TGGCCTGCCCTCACCTGTCTAGT.................................................23114.005.00------1.00--2.00--1.00------1.00---1.00-1.00----------------1.00--------1.001.00-1.001.00-1.00----1.00------
..........................................................................................................................TGGCCTGCCCTCACCTGTCTAG..................................................2215.005.00------1.001.00------------1.00-------------------------1.00---------1.00------------
..........................................................................................................................TGGCCTGCCCTCACCTGTCTAGA.................................................2313.005.00------------------1.00------------1.00--------------------------1.00----------
................................CAGGGCAGCGTGGAGGAG................................................................................................................................................1813.003.00------------------------1.00------------------1.00-----1.00-------------------
..........................GGGATGCAGGGCAGCGTGGAGGAGGCGC............................................................................................................................................282.000.00--2.00------------------------------------------------------------------
..................................................................................CAGGCTGGAGAGGGCTGGCTTGTAT.......................................................................................2512.0019.00----------2.00----------------------------------------------------------
...................................................................................AGGCTGGAGAGGGCTGGCTTGT.........................................................................................2212.002.00-----1.00-------------------------------------------------------1.00-------
..................................................................................................................ATCCATGCTGGCCTGCCCTCT...........................................................212.000.00-2.00-------------------------------------------------------------------
..................................................................................CAGGCTGGAGAGGGCTGGCTT...........................................................................................2121.001.00--------0.50-------0.50----------------------------------------------------
.....TTCCCACCTGGCGACTCC...........................................................................................................................................................................1811.001.00----------------------1.00----------------------------------------------
...............................................................TAGGGTGGTGGGGTAAGT.................................................................................................................181.000.00----------------------------1.00----------------------------------------
...................................................................................AGGCTGGAGAGGGCTGGCTTGTGAA......................................................................................2511.002.00--------------------------------------------------1.00------------------
......................................................................................................................................................................ACCGGGACAAGGGGCGGGCC........2011.001.00---------------------1.00-----------------------------------------------
.....................................CAGCGTGGAGGAGGTGCTGA.........................................................................................................................................201.000.00------------------------------1.00--------------------------------------
..........................................................................................................................TGGCCTGCCCTCACCTGTCTAAAT................................................241.000.00-----------------------------1.00---------------------------------------
................................CAGGGCAGCGTGGAGGAGAA..............................................................................................................................................2011.003.00-----------------------------------------------------------1.00---------
..........................................................................................................................TGGCCTGCCCTCACCTGTCTCGT.................................................2311.001.00----------------------------------------1.00----------------------------
.....................CCTATGGGATGCAGGGCAGCG........................................................................................................................................................2111.001.00----------------------------------1.00----------------------------------
.........................................................................................................................CTGGCCTGCCCTCACCTGTCTAGGCGC..............................................271.000.00---------------------------------------1.00-----------------------------
................................................................................GGCAGGCTGGAGAGGGAAA...............................................................................................191.000.00-----------1.00---------------------------------------------------------
..................................GGGCAGCGTGGAGGAGCA..............................................................................................................................................181.000.00---------------------------------1.00-----------------------------------
.................................................................................................................................................................CAACAACCGGGACAAGGGG..............1911.001.00---------------------------1.00-----------------------------------------
...................................................................................................................TCCATGCTGGCCTGCCACTT...........................................................201.000.00--1.00------------------------------------------------------------------
............................................................................................................................................................GTGGCCAACAACCGGGACAAGG................2211.001.00-----------1.00---------------------------------------------------------
.......................................................................................TGGAGAGGGCTGGCTTGT.........................................................................................1811.001.00---1.00-----------------------------------------------------------------
....................................................................................................................................................................CAACCGGGACAAGGGGCGGGCCA.......2311.001.00-----------------------------------1.00---------------------------------
.................................................................................GCAGGCTGGAGAGGGCTGGCCT...........................................................................................221.000.00--------------1.00------------------------------------------------------
..................................................................................CAGGCTGGAGAGGGCTGGCTTGTTCC......................................................................................2611.001.00-----------------------------------------1.00---------------------------
..........................................................................................................................TGGCCTGCCCTCACCTGTCTAAAA................................................241.000.00-----------------1.00---------------------------------------------------
...............................GCAGGGCAGCGTGGAGGAG................................................................................................................................................1911.001.00---------------1.00-----------------------------------------------------
...............................................................TAGGGTGGTGGGGTAGAGG................................................................................................................191.000.00--------------------------------1.00------------------------------------
..........................................................................................................................TGGCCTGCCCTCACCTGTCT....................................................2011.001.00-----------------------------------------------------1.00---------------
.......................................................................................TGGAGAGGGCTGGCTTGTT........................................................................................1911.001.00---1.00-----------------------------------------------------------------
..................................................................................CAGGCTGGAGAGGGCTGGCTTGTA........................................................................................2411.0019.00--------1.00------------------------------------------------------------
.........................................................................................................................................................................GGGACAAGGGGCGGGCCAAC.....2011.001.00------------------------------------------------------------1.00--------
..................................................................................CAGGCTGGAGAGGGCTGGCTTG..........................................................................................2221.001.00--------0.50-------------------------------------------------------0.50----
..........................................................................................................................TGGCCTGCCCTCACCTGTCCAGT.................................................231.000.00------------------------------------------------1.00--------------------
..................................................................................CAGGCTGGAGAGGGCTGGCTTTT.........................................................................................2320.501.00------------0.50--------------------------------------------------------
..................................................................................CAGGCTGGAGAGGGCTGGCTCC..........................................................................................2220.500.50--------------0.50------------------------------------------------------
..................................................................................CAGGCTGGAGAGGGCTGGCTTGAA........................................................................................2420.501.00-----------------0.50---------------------------------------------------
..................................................................................CAGGCTGGAGAGGGCTGGCTTT..........................................................................................2220.501.00-------------0.50-------------------------------------------------------
..................................................................................CAGGCTGGAGAGGGCTGGCT............................................................................................2020.500.50---------------------------------------------------------------0.50-----
..................................................................................CAGGCTGGAGAGGGCTGGC.............................................................................................1920.500.50-----------------------------------------------------------------0.50---
...................................................................................AGGCTGGAGAGGGCTGGCTT...........................................................................................2020.500.50---------------0.50-----------------------------------------------------
..............................................................................GGGGCAGGCTGGAGAGGGC.................................................................................................1930.330.33------------------------------------------------------------------0.33--
..................................................................................CAGGCTGGAGAGGGCTGG..............................................................................................1830.330.33-------------------------------------------------------------------0.33-
.......................................................................................TGGAGAGGGCTGGCTTG..........................................................................................1740.250.25------------0.25--------------------------------------------------------
.................................AGGGCAGCGTGGAGGAG................................................................................................................................................1740.250.25--------------------------------------------------------------------0.25
................................................................................GGCAGGCTGGAGAGGGC.................................................................................................1760.170.17------------------0.17--------------------------------------------------

Antisense strand
TCCACTTCCCACCTGGCGACTCCTATGGGATGCAGGGCAGCGTGGAGGAGGTGAGGGGTCACCTAGGGTGGTGGGGTAGGGGCAGGCTGGAGAGGGCTGGCTTGTTCCAGGCTGATCCATGCTGGCCTGCCCTCACCTGTCTAGGTGCTGAAGACCGTGGCCAACAACCGGGACAAGGGGCGGGCCAACCACAG
..............................................................................((((((((((((...((..(((((((...)))))))..))...)))))))))))).............................................................
.............................................................................78................................................................144................................................
SizePerfect hitTotal NormPerfect NormSRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038861(GSM458544)
MM466. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR038859(GSM458542)
MM386. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR038860(GSM458543)
MM426. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
...............................................................................................................CTGATCCATGCTGGCGGCC................................................................ 191.000.00------------------------------------1.00--------------------------------