ID: uc002ayg.3_intron_5_0_chr15_74917360_f.3p
GENE: (6)
chr15:74917943-74918192+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(17)
CELL-LINE 		(3)
CERVIX 		(3)
LIVER 		(2)
OTHER 		(21)
SKIN 		(1)
XRN.ip

Sense strand
GCCCAGAGCTCATCTGGGTATTGGGTGATGGCTGGTGGGGAGAGGTGCTCTTGCTCTGATTTCTCTTGCACTGTGTGTATCTGCATTCTGGTGTGTGACCCGGTGGCCTAGGAGAGAGTTGGGAACTGTCTTCATCTGAGAGAGGGGGTGAGGCAGGCCCCCAGCACACAGCCTGAGCCCTGCCCATCCTCCTCCTCCAGCCTGTGTGTCTTGATGTCTGACTGGTTCAACTTCCACGGTCACATGTGCA
.........................................................................................................................................(((.(((((((((.((((((....((((.....)).))...))))))))))).))))))).....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189785SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
...............................................................................................................................................................................AGCCCTGCCCATCCTCCTCCTTT....................................................2317.001.00--7.00----------------------------------------------------------
........................................................................................................................................TGAGAGAGGGGGTGAGGCAGC.............................................................................................215.000.00-5.00-----------------------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAGT.............................................................................................2314.004.001.00--3.00---------------------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAG..............................................................................................2214.004.00-1.00----1.00-----------------------------------1.00-------1.00----------
......................................................................................................................................TCTGAGAGAGGGGGTGATT.................................................................................................194.000.004.00------------------------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGC................................................................................................2013.003.00------1.00-----------1.00---------------------1.00--------------------
............................................................................................................................................AGAGGGGGTGAGGCAGGC............................................................................................1813.003.003.00------------------------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAAT.............................................................................................2313.001.00-1.00-----2.00-----------------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAGG.............................................................................................2313.003.00---2.00--------------------1.00------------------------------------
........................................................................................................................................TGAGAGAGGGGGTGAGGCAGGCCT..........................................................................................2413.002.002.00------------------------------------------------------1.00-----
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAT..............................................................................................2212.001.00-1.00-----1.00-----------------------------------------------------
........................................................................................................................................TGAGAGAGGGGGTGAGGCAGGCC...........................................................................................2312.002.00-----------1.00--1.00----------------------------------------------
...............................................................................................................................................................................AGCCCTGCCCATCCTCCTCCTCC....................................................2312.002.00----2.00--------------------------------------------------------
............................................................................................................................................................................CTGAGCCCTGCCCATCCTCCTCT.......................................................232.000.00--------------------------------------1.00----1.00-----------------
...............................................................................................TGACCCGGTGGCCTAGGAGAGAGCTGG................................................................................................................................272.000.00-----2.00-------------------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAGTAT...........................................................................................2512.004.002.00------------------------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAGGCCCC.........................................................................................2712.002.00-----1.00-------------------------1.00-----------------------------
................................................................................................GACCCGGTGGCCTAGTGG........................................................................................................................................182.000.00---------------1.00----1.00----------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGT.................................................................................................1921.500.501.50------------------------------------------------------------
..........................................................................................................................................AGAGAGGGGGTGAGGCAGGCCCTT........................................................................................2411.001.00-----------1.00-------------------------------------------------
....................................................................................................................................................................................TGCCCATCCTCCTCCTCCAGC.................................................2111.001.00----1.00--------------------------------------------------------
................................................................................................GACCCGGTGGCCTAGTGGA.......................................................................................................................................191.000.00--------------------------1.00----------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAAA.............................................................................................2311.001.001.00------------------------------------------------------------
...........................................................................................................................................GAGAGGGGGTGAGGCAGGCC...........................................................................................2011.001.00--------1.00----------------------------------------------------
............................................................................................................................................................................CTGAGCCCTGCCCATCCTCCTCCACT....................................................261.000.00--------1.00----------------------------------------------------
........................................................................................................................................................................................................CCTGTGTGTCTTGATGTCTGACTGGTTC......................2811.001.00----------------------1.00--------------------------------------
.............................................................................................................................................GAGGGGGTGAGGCAGGCCC..........................................................................................1911.001.00-------------------------1.00-----------------------------------
................................................................................................GACCCGGTGGCCTAGTGGT.......................................................................................................................................191.000.00---------------------------------------1.00---------------------
.................................................................................................................................................................................CCCTGCCCATCCTCCTCCTCCA...................................................2211.001.00-----------------------------------------------1.00-------------
...................................................................................................................................................................................................................TGATGTCTGACTGGTTCAA....................1911.001.00-------------------------------------1.00-----------------------
..........................................................................................................................................AGAGAGGGGGTGAGGCAGGCCC..........................................................................................2211.001.00-----------------1.00-------------------------------------------
....................................................................................................................................................TGAGGCAGGCCCCCAGCACACA................................................................................2211.001.00----------1.00--------------------------------------------------
.............................................................................TATCTGCATTCTGGTGGAGG.........................................................................................................................................................201.000.00-------------1.00-----------------------------------------------
.........................................................................................................................................GAGAGAGGGGGTGAGGCAGGCC...........................................................................................2211.001.00---------------------------------------------------1.00---------
............................................................................................................................................AGAGGGGGTGAGGCAGGCCCCC........................................................................................2211.001.00------------------------------------------------1.00------------
.................................................................................................ACCCGGTGGCCTAGGAGAGAGTTGGGAACTGTC........................................................................................................................3311.001.00-----1.00-------------------------------------------------------
................................................................................................................................TCTTCATCTGAGAGAGGCC.......................................................................................................191.000.00------------1.00------------------------------------------------
..........................................................................................................................................AGAGAGGGGGTGAGGCAGGCCTTT........................................................................................241.000.00--------------------------------1.00----------------------------
....................................................................................................................................................................................TGCCCATCCTCCTCCTCCAG..................................................2021.001.00----0.50---------------------------------------------------0.50----
................................................................................................................................................................................GCCCTGCCCATCCTCCTCCTC.....................................................2111.001.00----------------------------1.00--------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAGGTATT.........................................................................................2711.003.00----------------------------------------------------1.00--------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCA...............................................................................................2111.001.00------------------------------1.00------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCGA..............................................................................................2211.003.00------1.00------------------------------------------------------
............................................................................................................................................................................CTGAGCCCTGCCCATCCTCCTCCA......................................................241.000.00--------------------------------------------1.00----------------
........................................................................................................GGCCTAGGAGAGAGTTGG................................................................................................................................1811.001.00-----------------------------------1.00-------------------------
.................................................................................................................................................................................CCCTGCCCATCCTCCTCCTCCAGT.................................................241.000.00---------------------------------1.00---------------------------
................................................................................................................................................................................GCCCTGCCCATCCTCCTCCATA....................................................221.000.00-----------------------------------------1.00-------------------
..........................................................................................................................................AGAGAGGGGGTGAGGCAGGCCCA.........................................................................................2311.001.00---------------1.00---------------------------------------------
................................................................................................................................................................................................................TCTTGATGTCTGACTGGTTCA.....................2111.001.00-------------------------------------------------1.00-----------
.............................................................................................................................................................................TGAGCCCTGCCCATCCTCC..........................................................1911.001.00----1.00--------------------------------------------------------
...............................................................................................................................................................................AGCCCTGCCCATCCTCCTCCTCT....................................................231.000.00-----------------------------1.00-------------------------------
.......................................................................................................................................CTGAGAGAGGGGGTGAGGCAGGCCTTTT.......................................................................................281.000.00---------------------------------------------1.00---------------
...........................................................................................................................................GAGAGGGGGTGAGGCAGGCCAA.........................................................................................2211.001.00--------------1.00----------------------------------------------
........................................................................GTGTGTATCTGCATTTTTT...............................................................................................................................................................191.000.00----------------------------------1.00--------------------------
...............................................................................................................................................................................AGCCCTGCCCATCCTCCCTCC......................................................211.000.00-------------1.00-----------------------------------------------
...............................................................................................................................................................................AGCCCTGCCCATCCTCCTCCT......................................................2111.001.00------------------------------------------------------1.00------
....................................................................................................................................CATCTGAGAGAGGGGGTGAGGCAGGCCCCCAG......................................................................................3211.001.00------------------------------------1.00------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAGAAGA..........................................................................................2611.004.00----------------1.00--------------------------------------------
............................................................................................................................................................................CTGAGCCCTGCCCATCCTCCTCTA......................................................241.000.00-------------------1.00-----------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGGCAGGCAA..........................................................................................261.000.00---------1.00---------------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAGAC................................................................................................2020.500.50----------------0.50--------------------------------------------
......................................................................................................................................TCTGAGAGAGGGGGTGAG..................................................................................................1820.500.50---------------------------------------------------------0.50---
............................................................................................................................................................................CTGAGCCCTGCCCATC..............................................................1660.170.17-----------------0.17-------------------------------------------
...................................................................................................................................................................................CTGCCCATCCTCCTCCTCC....................................................1970.140.14----0.14--------------------------------------------------------

Antisense strand
GCCCAGAGCTCATCTGGGTATTGGGTGATGGCTGGTGGGGAGAGGTGCTCTTGCTCTGATTTCTCTTGCACTGTGTGTATCTGCATTCTGGTGTGTGACCCGGTGGCCTAGGAGAGAGTTGGGAACTGTCTTCATCTGAGAGAGGGGGTGAGGCAGGCCCCCAGCACACAGCCTGAGCCCTGCCCATCCTCCTCCTCCAGCCTGTGTGTCTTGATGTCTGACTGGTTCAACTTCCACGGTCACATGTGCA
.........................................................................................................................................(((.(((((((((.((((((....((((.....)).))...))))))))))).))))))).....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189785SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
..........................................................................................................................................................................................GCTGGAGGAGGAGGA................................................. 1503.003.00---------1.001.00----------------1.00---------------------------------
...........................................................................................................................................................................................CCTCCTCCTCCAGCCTGCATT.......................................... 211.000.00----------------------------------------------1.00--------------
.........................................................................................................................................................................................AGACACACAGGCTGGAGGAGGAGGAT....................................... 2611.001.00-----------------------1.00-------------------------------------
...........................................................................................................................................................................................CATCAAGACACACAGGCTGGAGGAGGAGG.................................. 2911.001.00-----------------------------------------------------1.00-------
......................................................................................................................................................................................CCCATCCTCCTCCTCCAATA................................................ 201.000.00---------------------1.00---------------------------------------
................................................................................................................................................................................................TCCTCCAGCCTGTGTTAGG....................................... 191.000.00------------1.00------------------------------------------------
...............................................................................................................................................................................................................................CGTGGAAGTTGAACC............ 1530.330.33-----------------------------------------------------------0.33-
.....................................................................................................................................................................................TGGAGGAGGAGGATGGGC................................................... 1830.330.33----------------------------------------------------------0.33--
........................................................................................................................................................................................GCTGGAGGAGGAGGATG................................................. 1780.120.12------------------------------------------------------------0.12