ID: uc002aua.2_intron_8_0_chr15_72545846_r.5p
GENE: (11)
chr15:72546596-72546845-


(1)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(3)
BREAST
(23)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
HELA
(1)
LIVER
(5)
OTHER
(12)
SKIN
(1)
XRN.ip

Sense strand
GGCTTCAGAAAGCTCTGGATAGTGTGATGTCTATTCGGGAGATGACCCAGGTATTCTGCCTTCTCTCTGTCCCCTCTCCTTTGCCTGCCCAGTTCAAGTGTCCTATTCTGTTGGTAATTTGTGGGAGTGGGATGAAGATTTAGAGATGCTACGCACTGTATTTTTTTTTTAGTCTTTCCTCTTTAACCTTCCCAATTCCTGTTCTCTGTTTTGTTAGCTCTGTTACTCCTCTTTATTCTCTTTAGTCTTT
...............................................................(((..((((((((((..(((((....(((....((....))...)))..))))).....))))).)))))..)))................................................................................................................
..................................................51.....................................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR343334SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR343337SRR037934(GSM510472)
293cand4_rep3. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR343336SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR040025(GSM532910)
G613T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029131(GSM416760)
MCF7. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................AATTTGTGGGAGTGGGGGA....................................................................................................................1922.000.003.006.003.00-2.003.002.00-1.00--------------------1.00-------1.00--------------
...................................................................................................................AATTTGTGGGAGTGGGGGAC...................................................................................................................2022.000.001.002.005.005.001.00-1.001.00--------2.00-1.00----1.00----------1.00-----1.00-----------
..................................................................................................................................GATGAAGATTTAGAGAGTT.....................................................................................................1911.000.0011.00---------------------------------------------------
..................................................................................................................TAATTTGTGGGAGTGGGGGAC...................................................................................................................2136.670.330.33-0.670.332.000.330.670.67-1.33-------------------------------0.33----------
..................................................................................................................TAATTTGTGGGAGTGGGGGA....................................................................................................................2036.330.33-2.670.670.330.330.330.670.33------------------------------------0.330.33--0.33---
...................................................................................................................................................................................................................................CCTCTTTATTCTCTTCG......175.000.00-----------2.00-2.00---1.00----------------------------------
...................................................................................................GTCCTATTCTGTTGG........................................................................................................................................1562.502.50--------2.33------------------------------------------0.17
...................................................................................................................................................................................................................................CCTCTTTATTCTCTTCGA.....182.000.00-----------------1.00--------1.00-------------------------
..................................................................CTGTCCCCTCTCCTTCATA.....................................................................................................................................................................192.000.00--------------------1.00-------1.00-----------------------
......AGAAAGCTCTGGATAGTGTGATGTC...........................................................................................................................................................................................................................2512.002.00----------2.00-----------------------------------------
..................ATAGTGTGATGTCTATTCGG....................................................................................................................................................................................................................2012.002.00---------------2.00------------------------------------
...................................................TATTCTGCCTTCTCTCTG.....................................................................................................................................................................................1811.001.00---------------------1.00------------------------------
...................................................................................................................AATTTGTGGGAGTGGGGA.....................................................................................................................181.000.00------------------------1.00---------------------------
........................................................................................................................................................................................................GTTCTCTGTTTTGTTAGCTCTGTTAC........................2611.001.00--------------------------------------1.00-------------
................................ATTCGGGAGATGACCCAGGGCTC...................................................................................................................................................................................................231.000.00--------------------------------1.00-------------------
.............................................................................................................................................................................CTTTCCTCTTTAACCTTCCCAATTCCTG.................................................2811.001.00-----------------------------------1.00----------------
...................................................................................................................AATTTGTGGGAGTGGGGAC....................................................................................................................191.000.001.00---------------------------------------------------
...............................................................................................................................................................ATTTTTTTTTTAGTCTTCTGG......................................................................211.000.00-------------------------------1.00--------------------
.....CAGAAAGCTCTGGATAGTGTGATG.............................................................................................................................................................................................................................2411.001.00------------------------------------1.00---------------
..................................................................................................................................GATGAAGATTTAGAGAGT......................................................................................................181.000.00--1.00-------------------------------------------------
.....CAGAAAGCTCTGGATAGTGTGATGTCTATTCGG....................................................................................................................................................................................................................3311.001.00-------------------1.00--------------------------------
...................................................................................................................AATTTGTGGGAGTGGGGAAC...................................................................................................................201.000.001.00---------------------------------------------------
.......................................................................................................................TGTGGGAGTGGGATGAAGATTT.............................................................................................................2211.001.00----------------------1.00-----------------------------
...................................................................................................................AATTTGTGGGAGTGGGGGTC...................................................................................................................201.000.00---------1.00------------------------------------------
..............................................................................................................................................................................................................................TTACTCCTCTTTATTTTTT.........191.000.00---------------------------------------1.00------------
.............................TCTATTCGGGAGATGACC...........................................................................................................................................................................................................1811.001.00--------------1.00-------------------------------------
............................GTCTATTCGGGAGATGACCCAGG.......................................................................................................................................................................................................2311.001.00--------------1.00-------------------------------------
...................................................................................................................AATTTGTGGGAGTGGGGCCT...................................................................................................................201.000.00------------1.00---------------------------------------
......AGAAAGCTCTGGATAGTGTGATGTCTATT.......................................................................................................................................................................................................................2911.001.00------------1.00---------------------------------------
...................................................................................................................AATTTGTGGGAGTGGGGGCC...................................................................................................................201.000.00-------1.00--------------------------------------------
..................................................................................................................TAATTTGTGGGAGTGGGGA.....................................................................................................................1930.670.33-----0.33-----------------------------------------0.33----
.......................................................................................................................TGTGGGAGTGGGATGAAGA................................................................................................................1920.500.50------------------------------------------0.50---------
..................................................................................................................TAATTTGTGGGAGTGGGTGA....................................................................................................................2030.330.33---0.33------------------------------------------------
..................................................................................................................TAATTTGTGGGAGTGGGGGGC...................................................................................................................2130.330.33---------0.33------------------------------------------
...................................................................................................GTCCTATTCTGTTGGCCT.....................................................................................................................................1860.332.50----------0.33-----------------------------------------
..................................................................................................................TAATTTGTGGGAGTGGGGGTC...................................................................................................................2130.330.33-----0.33----------------------------------------------
..................................................................................................................TAATTTGTGGGAGTGGGGGAA...................................................................................................................2130.330.33---0.33------------------------------------------------
..................................................................................................................TAATTTGTGGGAGTGGGGTA....................................................................................................................2030.330.33-------0.33--------------------------------------------
..................................................................................................................TAATTTGTGGGAGTGGG.......................................................................................................................1730.330.33-----------------------------------------0.33----------
..................................................................................................................TAATTTGTGGGAGTGG........................................................................................................................1640.250.25-------------------------------------------------0.25--
..................................................................................................................TAATTTGTGGGAGTGGAC......................................................................................................................1840.250.25------------------0.25---------------------------------
..................................................................................................................TAATTTGTGGGAGTGCGG......................................................................................................................1850.200.20-------0.20--------------------------------------------
..................................................................................................................TAATTTGTGGGAGTGTGGG.....................................................................................................................1950.200.20---0.20------------------------------------------------
..................................................................................................................TAATTTGTGGGAGTG.........................................................................................................................1550.200.20--------------------------------------------------0.20-
..................................................................................................................TAATTTGTGGGAGTGACAG.....................................................................................................................1950.200.20------------------0.20---------------------------------
...................................................................................................GTCCTATTCTGTTGGCCTT....................................................................................................................................1960.172.50----------0.17-----------------------------------------

Antisense strand
GGCTTCAGAAAGCTCTGGATAGTGTGATGTCTATTCGGGAGATGACCCAGGTATTCTGCCTTCTCTCTGTCCCCTCTCCTTTGCCTGCCCAGTTCAAGTGTCCTATTCTGTTGGTAATTTGTGGGAGTGGGATGAAGATTTAGAGATGCTACGCACTGTATTTTTTTTTTAGTCTTTCCTCTTTAACCTTCCCAATTCCTGTTCTCTGTTTTGTTAGCTCTGTTACTCCTCTTTATTCTCTTTAGTCTTT
...............................................................(((..((((((((((..(((((....(((....((....))...)))..))))).....))))).)))))..)))................................................................................................................
..................................................51.....................................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR343334SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR343337SRR037934(GSM510472)
293cand4_rep3. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR343336SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR040025(GSM532910)
G613T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029131(GSM416760)
MCF7. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
.............................................................................CCTTTGCCTGCCCAGTTTT.......................................................................................................................................................... 191.000.00-------------------------1.00--------------------------
..................................................................................................................................................................................................ATTCCTGTTCTCTGTCTTT..................................... 191.000.00---------------------------------1.00------------------
..........................................................................................................................................................................................................................TCTGTTACTCCTCTTAAGG............. 191.000.00------------------------------1.00---------------------
........................................................................................................................................................................................................GTTCTCTGTTTTGTTTCTG............................... 191.000.00---------------------------1.00------------------------
.........................................................................................................................................................................TTAAAGAGGAAAGACTA................................................................ 1730.330.33----------------------------------------------0.33-----
...................................................................................................................CCCACTCCCACAAATT....................................................................................................................... 1630.330.33-------------------------------------------0.33--------