ID: uc002att.1_intron_2_0_chr15_72495530_r.3p
GENE: (3)
chr15:72495480-72495729-


(1)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(2)
BREAST
(8)
CELL-LINE
(4)
CERVIX
(5)
HEART
(4)
LIVER
(2)
OTHER
(6)
SKIN

Sense strand
GGGGAAGTGGCAGCACCTCCTGAAGCAGTTGGACTTTCATCACCCTACCTCTGCATCTGCCTGAAGGACAGATTTAGCCAATTAACCTAAGGTTACCTTCCTCTCTGATAAATTCCCCATTCTGTCTTCCCATGTGTTGTGTCTCGTTTTTTTCCTCCTCCTTCCCTCTTCCTTGCCCCCTCTTCCCCTAAACCTTACAGATAGCTCGTGAGGCTGAGGCAGCCATGTTCCACCGCAAGCTGTTTGAAGA
..............................................................(((((((((((.((((((..(((((...)))))...........((((............))))......)).)))).)))).)))))))..................................................................................................
.......................................................56...............................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040009(GSM532894)
G727T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR040008(GSM532893)
G727N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................CTTCCCTCTTCCTTGCCCGCC.....................................................................2129.000.0020.009.00----------------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGCCCGC......................................................................207.000.007.00-----------------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGCCCGCCC....................................................................225.000.004.00---1.00-------------------------------
.................................................................................................................................................................TTCCCTCTTCCTTGCCCGCCC....................................................................212.000.00-1.00------1.00---------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGCTCGC......................................................................202.000.002.00-----------------------------------
............................................................CTGAAGGACAGATTTAGCC...........................................................................................................................................................................1912.002.00------2.00-----------------------------
.....AGTGGCAGCACCTCCTGAAGCAGTTGGACTC......................................................................................................................................................................................................................312.000.00--2.00---------------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGCCCGCT.....................................................................212.000.002.00-----------------------------------
........................................................................................................................................................................................................................................CCGCAAGCTGTTTGAAGA1811.001.00----------------------1.00-------------
................................................................................................................................................................CTTCCCTCTTCCTTGCCTGCC.....................................................................211.000.001.00-----------------------------------
.......................................................................................................................................................................................................GATAGCTCGTGAGGCTGAGGC..............................2111.001.00---1.00--------------------------------
....................................TCATCACCCTACCTCCGG....................................................................................................................................................................................................181.000.00-----1.00------------------------------
.............................................................TGAAGGACAGATTTAGC............................................................................................................................................................................1711.001.00---1.00--------------------------------
........................................................................................................................................................................................................ATAGCTCGTGAGGCTGAGG...............................1911.001.00--------------1.00---------------------
.......................................................................................................................................................................................................GATAGCTCGTGAGGCTGAGGCAGCC..........................2511.001.00-------------------1.00----------------
................................................................................................................................................................................................................................ATGTTCCACCGCAAGC..........1611.001.00-------1.00----------------------------
........................................................................................................................................................................................................ATAGCTCGTGAGGCTGAGGCAGCCATG.......................2711.001.00---------------1.00--------------------
.................................................................................................................................................................TTCCCTCTTCCTTGCCCGCC.....................................................................201.000.00-1.00----------------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGCCAGCC.....................................................................211.000.001.00-----------------------------------
............................................................................................................................................................................................................CTCGTGAGGCTGAGGCA.............................1701.001.00------------1.00-----------------------
..................................................................................................................................................TTTTTTTCCTCCTCCTTCCCCC..................................................................................221.000.00-----1.00------------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGTCC........................................................................181.000.001.00-----------------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGCCTGCT.....................................................................211.000.001.00-----------------------------------
....................................................................................................................................................................................TCTTCCCCTAAACCTTACAGATAGCT............................................2611.001.00--------1.00---------------------------
.....................................................................................................................................................................................................................................CCACCGCAAGCTGTT......1511.001.00---------------------1.00--------------
...................CTGAAGCAGTTGGACTTT.....................................................................................................................................................................................................................1811.001.00-------------------------1.00----------
..GGAAGTGGCAGCACCTCCTGAAGCAGTTGGA.........................................................................................................................................................................................................................3111.001.00-----------1.00------------------------
.................................................................................................................................................................TTCCCTCTTCCTTGCCCTCCA....................................................................211.000.00-1.00----------------------------------
.......................................................................................................................................................................................................GATAGCTCGTGAGGCTGAGGCAGC...........................2411.001.00---1.00--------------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGCCCGCGT....................................................................221.000.001.00-----------------------------------
..........................................................................................................................................................................................................................GCAGCCATGTTCCACCGCAAGCT.........2311.001.00-------------1.00----------------------
.....................................................................................CCTAAGGTTACCTTCCGAAC.................................................................................................................................................201.000.00----------------1.00-------------------
........................................................................................................................................................................................CCCCTAAACCTTACAGATAGCTC...........................................2311.001.00------------------1.00-----------------
...............................................................................................................................................................................................................GTGAGGCTGAGGCAGCCATGTTCCACC................2711.001.00-----------------1.00------------------
.......TGGCAGCACCTCCTGAAGCAGTTGGACTCTC....................................................................................................................................................................................................................311.000.00----------1.00-------------------------
................................................................................................................................................................CTTCCCTCTTCCTTGCCATCC.....................................................................211.000.00----1.00-------------------------------
............................................................................................................................................GTCTCGTTTTTTTCCC..............................................................................................161.000.00---------1.00--------------------------
...........................................................................................................................................................................................................GCTCGTGAGGCTGAGGCAGGC..........................211.000.00--------------------1.00---------------
.................................................................................................................................................................TTCCCTCTTCCTTGCCCGC......................................................................191.000.00-1.00----------------------------------
.......TGGCAGCACCTCCTGGGAC................................................................................................................................................................................................................................191.000.00--1.00---------------------------------
.......................................................................................................................................................................................................GATAGCTCGTGAGGCTGAGGCAGCCATGT......................2911.001.00-------1.00----------------------------
.............................................................................................................................................................................................................TCGTGAGGCTGAGGCGGA...........................181.000.00--------------------------1.00---------
.................................................................................................................................................................TTCCCTCTTCCTTGCCCTCCC....................................................................211.000.00----1.00-------------------------------
..........................................................................................................................................................................................................AGCTCGTGAGGCTGAGGC..............................1820.500.50--0.50---------------------------------
...........AGCACCTCCTGAAGCA...............................................................................................................................................................................................................................1630.330.33----------0.33-------------------------
.............................................................................................................AAATTCCCCATTCTGTC............................................................................................................................1740.250.25----------------------------0.25-------
............................................................................................................................TCTTCCCATGTGTTGT..............................................................................................................1650.200.20------------------------------0.20-----

Antisense strand
GGGGAAGTGGCAGCACCTCCTGAAGCAGTTGGACTTTCATCACCCTACCTCTGCATCTGCCTGAAGGACAGATTTAGCCAATTAACCTAAGGTTACCTTCCTCTCTGATAAATTCCCCATTCTGTCTTCCCATGTGTTGTGTCTCGTTTTTTTCCTCCTCCTTCCCTCTTCCTTGCCCCCTCTTCCCCTAAACCTTACAGATAGCTCGTGAGGCTGAGGCAGCCATGTTCCACCGCAAGCTGTTTGAAGA
..............................................................(((((((((((.((((((..(((((...)))))...........((((............))))......)).)))).)))).)))))))..................................................................................................
.......................................................56...............................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040009(GSM532894)
G727T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR040008(GSM532893)
G727N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................TTTTTTCCTCCTCCTTCTT.................................................................................... 191.000.00---------------------------1.00--------
..................................TTTCATCACCCTACCAAGA..................................................................................................................................................................................................... 191.000.00------------------------1.00-----------
..............................................................................................................AATTCCCCATTCTGTAAGG......................................................................................................................... 191.000.00---------1.00--------------------------
..................................................................................................................................................TTTTTTTCCTCCTCCTACA..................................................................................... 191.000.00-----------------------1.00------------
.................................CTTTCATCACCCTACAGA....................................................................................................................................................................................................... 180.220.00--------------------------------0.110.11--
.................................GTAGGGTGATGAAAG.......................................................................................................................................................................................................... 1590.220.22-----------------------------0.22------
.................................CTTTCATCACCCTACAATC...................................................................................................................................................................................................... 190.110.00----------------------------------0.11-
.................................CTTTCATCACCCTACAGAA...................................................................................................................................................................................................... 190.110.00-----------------------------------0.11
.................................CTTTCATCACCCTACAG........................................................................................................................................................................................................ 170.110.00-------------------------------0.11----