ID: uc002ass.2_intron_1_0_chr15_71128845_r.3p
GENE: (1)
chr15:71128795-71129044-


(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(11)
BRAIN
(4)
BREAST
(25)
CELL-LINE
(1)
FIBROBLAST
(3)
HEART
(1)
HELA
(1)
LIVER
(2)
OTHER
(3)
SKIN

Sense strand
TAAGGACCCTAGTTGTGTTGGATTAGGGGGTCCACCCTACTCCAGTAAGACCTCATCTTAATTAATTGCATCTGCAGTGACCCCCATTTCCAAATAACATCATACTCCAAGGTATTGGGGGTCAGGACTTCAGCATATGAATTTTTGGGGGACACAGTTCAACGTTGACCCTAACACCCGGTGTCTCCTTCTGGTCTCAGTGGCACCACTGCAAGTGGAGGTGAGAACGAGCGTGAGGACCTGGAGCAGG
....................................................................................................................................((...((((((...(((((((((........((((....)))).....)))))))))...))).)))...))..............................................
................................................................................................................................129.............................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR189787SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189785SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037931(GSM510469)
293GFP. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR029127(GSM416756)
A549. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037936(GSM510474)
293cand1. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189783SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038859(GSM458542)
MM386. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR343337SRR038852(GSM458535)
QF1160MB. (cell line)
.....................................................................................................................................CATATGAATTTTTGGGGGGATT...............................................................................................22144.000.0043.0025.0011.00-8.003.0010.00---3.003.002.001.003.00-2.00-2.002.002.00--2.00-2.001.001.001.00-1.00-1.00-1.001.001.001.00-1.001.001.001.001.00--1.00---1.00--1.001.001.001.00-
...................................................................................................................................AGCATATGAATTTTTGGGGGGAC................................................................................................2335.000.0024.006.002.00--2.00----------------------------------------------1.00-----
...................................................................................................................................AGCATATGAATTTTTGGGGGGACT...............................................................................................2426.000.006.0019.001.00-------------------------------------------------------
.......................................................................................................................................TATGAATTTTTGGGGGGATT...............................................................................................2020.000.00-------10.007.002.001.00-----------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGATC...............................................................................................2213.000.00-5.006.00---------1.001.00--------------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGT..................................................................................................2111.000.00---11.00------------------------------------------------------
....................................................................................................................................GCATATGAATTTTTGGGGGGACT...............................................................................................2311.000.00-4.007.00-------------------------------------------------------
....................................................................................................................................GCATATGAATTTTTGGGGGGATT...............................................................................................239.000.002.00-1.00--1.00-----1.00----------2.00--------1.00-------------------------1.00
........................................................................................................................................ATGAATTTTTGGGGGGATT...............................................................................................197.000.00---------4.00-----2.00-----1.00------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGACC...............................................................................................224.000.001.001.00---------------------------1.00---------------1.00------------
...................................................................................................................................AGCATATGAATTTTTGGGGGGACC...............................................................................................243.000.00-3.00--------------------------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGGATT...............................................................................................243.000.00----------2.00---------------1.00-------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGATT................................................................................................213.000.00-1.001.00--------1.00----------------------------------------------
................................................................................................................................................................................................................................GAACGAGCGTGAGGACCTGGAGCATA262.000.00-----------------2.00----------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGGT................................................................................................212.000.00-----1.00------------------------------------------1.00---------
...................................................................................................................................AGCATATGAATTTTTGGGGGGATC...............................................................................................242.000.00-1.001.00-------------------------------------------------------
.......................................................................................................................................TATGAATTTTTGGGGGTTT................................................................................................192.000.00---------------1.00-----1.00------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGAGC...............................................................................................221.000.00----1.00-----------------------------------------------------
.................................................................................................................................................................................................................................AACGAGCGTGAGGACCTGGAGCA..2311.001.00-------------1.00--------------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGGACA...............................................................................................241.000.00---------------------------------------------------1.00------
......................................................................................................................................ATATGAATTTTTGGGGGGACC...............................................................................................211.000.00-----1.00----------------------------------------------------
....................................................................................................................................GCATATGAATTTTTGGGGGGATC...............................................................................................231.000.00-1.00--------------------------------------------------------
..................................................................................................................................CAGCATATGAATTTTTGGGGGGACT...............................................................................................251.000.00--1.00-------------------------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGCTT................................................................................................231.000.00-1.00--------------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGTATT...............................................................................................221.000.00-----1.00----------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGAAT...............................................................................................221.000.00-1.00--------------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGCCT...............................................................................................221.000.00-1.00--------------------------------------------------------
..................................................................................................................................................................................................................GCAAGTGGAGGTGAGAACGAGCGT................2411.001.00------------------------1.00---------------------------------
....................................................................................................................................GCATATGAATTTTTGGGGGGACC...............................................................................................231.000.00--1.00-------------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGAAA...............................................................................................221.000.00----------------1.00-----------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGATT................................................................................................231.000.00----1.00-----------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGATC................................................................................................211.000.00-1.00--------------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGTTT...............................................................................................221.000.00-1.00--------------------------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGAAC................................................................................................231.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................................GCAAGTGGAGGTGAGAACGT....................201.000.00------------------------1.00---------------------------------
.....................................................................................................................................CATATGAATTTTTGGA.....................................................................................................161.000.00---------------------------------1.00------------------------
....................................................................................................................................GCATATGAATTTTTGGGGGGCTT...............................................................................................231.000.00-------------------------------------------------1.00--------
......................................................................................................................................ATATGAATTTTTGGGGGATT................................................................................................201.000.00--1.00-------------------------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGGTT................................................................................................231.000.00--------------------------------------------1.00-------------
......................................................................................................................................ATATGAATTTTTGGGGGGATT...............................................................................................211.000.00------------1.00---------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGGTC...............................................................................................221.000.00--1.00-------------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGGTT...............................................................................................221.000.00-1.00--------------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGATTA...............................................................................................221.000.00-----1.00----------------------------------------------------
........................................................................................................................................................................................CTCCTTCTGGTCTCAGTGTCC.............................................211.000.00--------------------------------------1.00-------------------
.....................................................................................................................................CATATGAATTTTTGGGGTGA.................................................................................................201.000.00--1.00-------------------------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGTCT................................................................................................231.000.00----1.00-----------------------------------------------------
...................................................................................................................................AGCATATGAATTTTTGGGGGTACT...............................................................................................241.000.00--1.00-------------------------------------------------------
...............................................................................................................................CTTCAGCATATGAATTTTTGGGGGGATA...............................................................................................281.000.00-1.00--------------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGATTT...............................................................................................221.000.00-1.00--------------------------------------------------------
.....................................................................................................................................CATATGAATTTTTGGGGGGAGT...............................................................................................221.000.00--1.00-------------------------------------------------------
.......................................................................................................................................................................................................................................CGTGAGGACCTGGAGCGA.181.000.00-----------------------------------------------1.00----------
...................................................................................................................................AGCATATGAATTTTTGGGGGAC.................................................................................................2230.330.33-0.33--------------------------------------------------------

Antisense strand
TAAGGACCCTAGTTGTGTTGGATTAGGGGGTCCACCCTACTCCAGTAAGACCTCATCTTAATTAATTGCATCTGCAGTGACCCCCATTTCCAAATAACATCATACTCCAAGGTATTGGGGGTCAGGACTTCAGCATATGAATTTTTGGGGGACACAGTTCAACGTTGACCCTAACACCCGGTGTCTCCTTCTGGTCTCAGTGGCACCACTGCAAGTGGAGGTGAGAACGAGCGTGAGGACCTGGAGCAGG
....................................................................................................................................((...((((((...(((((((((........((((....)))).....)))))))))...))).)))...))..............................................
................................................................................................................................129.............................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR189787SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189785SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037931(GSM510469)
293GFP. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR029127(GSM416756)
A549. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037936(GSM510474)
293cand1. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189783SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038859(GSM458542)
MM386. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR343337SRR038852(GSM458535)
QF1160MB. (cell line)