ID: uc002aqf.2_intron_2_0_chr15_67008837_f.5p
GENE: (3)
chr15:67008787-67009036+


(1)
AGO1.ip OTHER.mut 		(3)
BRAIN 		(11)
BREAST 		(14)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(2)
HELA 		(7)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(3)
UTERUS

Sense strand
TGAAACGGAGGCTACCAACTCCCTCATCACTGCTCCGGGTGAATTCTCAGGTCAGCATTTTTTCTTGTGCATTGCTGTTGTGTTGAAATTTATCGAAGGGGACAGCTGCGGAGGGGGCTTGGTGGAAGACTTTTTGACTTCCCCTCTTCTTTTTGTTTCCCTTTTCCTCCAATCCTTGGATGGGAAGGTTGCCAATGTTTCAGTCCCTGGTGTTTTTGGGGTTAAGAACAGTCTGTATGAGTGAAACCTG
.............................................................(((....((((.......)))).))).......(((((((((((....((((((((...(((.((((...)))).))))))))))).....))))).))))))......................................................................................
.............................................................62......................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040027(GSM532912)
G220T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
..................................................................GTGCATTGCTGTTGTATTG.....................................................................................................................................................................197395.430.14381.1410.570.140.86-0.43-------------------0.140.140.140.14-0.290.140.14-0.14-----0.14-0.140.140.14----0.140.14-0.14---
..................................................................GTGCATTGCTGTTGTATT......................................................................................................................................................................1876.140.144.14-0.14--0.14--------------------0.140.140.140.14-0.14-0.14-0.14-0.14-0.14-0.14---0.14-0.14--------
..................................................................GTGCATTGCTGTTGTATTA.....................................................................................................................................................................1975.290.145.000.14----------------------------------------------0.14-------
..................................................................GTGCATTGCTGTTGTGTTG.....................................................................................................................................................................1915.005.005.00-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTATTT.....................................................................................................................................................................1974.290.144.29-------------------------------------------------------
..................................................................................................................................................................................................................TGTTTTTGGGGTTAAAAA......................184.000.00--------1.00----1.00--1.00-----1.00---------------------------------
..................................................................GTGCATTGCTGTTGTATGG.....................................................................................................................................................................1972.570.142.57-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTATCG.....................................................................................................................................................................1972.570.142.43--0.14----------------------------------------------------
..................................................................GTGCATTGCTGTTGTTTTG.....................................................................................................................................................................1972.290.142.14----------------------------0.14--------------------------
..................................................................GTGCATTGCTGTTGTACTG.....................................................................................................................................................................1972.000.141.86---------------------------------------------0.14---------
..................................................................GTGCATTGCTGTTGTGTTGC....................................................................................................................................................................2012.005.002.00-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTGTTGCAA..................................................................................................................................................................2212.005.00------------1.00-1.00-----------------------------------------
..................................................................GTGCATTGCTGTTGTAGTG.....................................................................................................................................................................1971.430.141.43-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTCTTG.....................................................................................................................................................................1971.290.141.29-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTAT.......................................................................................................................................................................1771.290.140.86-------------------------0.14---------0.14-0.14-----------------
..................................................................GTGCATTGCTGTTGTGTTTC....................................................................................................................................................................201.000.00---------------------1.00----------------------------------
....................................................................GCATTGCTGTTGTGTGC.....................................................................................................................................................................171.000.00----------1.00---------------------------------------------
..................................................................GTGCATTGCTGTTGTGGTG.....................................................................................................................................................................191.000.001.00-------------------------------------------------------
............................ACTGCTCCGGGTGAATTCTCAGACGC....................................................................................................................................................................................................261.000.00-----------1.00--------------------------------------------
..........................................................................................TATCGAAGGGGACAGCTGCGGAGGGGGCTTGGTGGAAGACTTTTTGACTTCCCCTCTTCTTTTTGTTTCCC.........................................................................................7111.001.00-----------------------1.00--------------------------------
.................................................................TGTGCATTGCTGTTGCATT......................................................................................................................................................................191.000.00------------------------1.00-------------------------------
........................................................ATTTTTTCTTGTGCATTG................................................................................................................................................................................1811.001.001.00-------------------------------------------------------
..............................................................................................................................................CCTCTTCTTTTTGTTTTATT........................................................................................201.000.00----1.00---------------------------------------------------
..................................CCGGGTGAATTCTCAGACGC....................................................................................................................................................................................................201.000.00-----1.00--------------------------------------------------
.................................................................................................................................................................................................................GTGTTTTTGGGGTTAAAAA......................191.000.00-----------------1.00--------------------------------------
...........................................................................................................................................................TTTCCCTTTTCCTCCGA..............................................................................171.000.00----1.00---------------------------------------------------
...............CAACTCCCTCATCACTAACC.......................................................................................................................................................................................................................201.000.00---1.00----------------------------------------------------
................................................................................................................................................................................TGGATGGGAAGGTTGCCAAT......................................................2011.001.00--1.00-----------------------------------------------------
...............................................................................................................AGGGGGCTTGGTGGAAGACTTTTTG..................................................................................................................2511.001.00--1.00-----------------------------------------------------
..........................................................................................................TGCGGAGGGGGCTTGTGT..............................................................................................................................181.000.00---------1.00----------------------------------------------
...............................................................................................................................................................................TTGGATGGGAAGGTTGC..........................................................1711.001.00------1.00-------------------------------------------------
.............................................................................................................GGAGGGGGCTTGGTGGAT...........................................................................................................................181.000.00------------------1.00-------------------------------------
...............................................................................................................................................................................TTGGATGGGAAGGTTGCC.........................................................1811.001.00-------------------1.00------------------------------------
...................TCCCTCATCACTGCTCCGGGTGA................................................................................................................................................................................................................2311.001.00-------1.00------------------------------------------------
....................................................................................................................................................CTTTTTGTTTCCCTTTTAGT..................................................................................201.000.00---------------1.00----------------------------------------
..................................................................GTGCATTGCTGTTGTGGAG.....................................................................................................................................................................191.000.001.00-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTGTCGC....................................................................................................................................................................201.000.001.00-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTATAG.....................................................................................................................................................................1970.570.140.57-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTAATG.....................................................................................................................................................................1970.570.140.57-------------------------------------------------------
..................CTCCCTCATCACTGCTCC......................................................................................................................................................................................................................1820.500.50-------------------------0.50------------------------------
..................................................................GTGCATTGCTGTTGTATTC.....................................................................................................................................................................1970.430.140.43-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTATCT.....................................................................................................................................................................1970.430.140.43-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTCGGG.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTTATG.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTTTCG.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..............................................................................................................................................................................CTTGGATGGGAAGGT.............................................................1570.140.14-----------------------------------------------------0.14--
..................................................................GTGCATTGCTGTTGTTAGG.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..................................................................GTGCATTGCTGTTGT.........................................................................................................................................................................1570.140.14---0.14----------------------------------------------------
..................................................................GTGCATTGCTGTTGTAGTA.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTTGTG.....................................................................................................................................................................1970.140.14------------------------------------------------------0.14-
..................................................................GTGCATTGCTGTTGTAGTT.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTTGTT.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTTCCG.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTTTCT.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
..................................................................GTGCATTGCTGTTGTCATG.....................................................................................................................................................................1970.140.140.14-------------------------------------------------------
......................................................................................................................................................TTTTGTTTCCCTTTTCC...................................................................................1790.110.11-------------------------------------------------------0.11

Antisense strand
TGAAACGGAGGCTACCAACTCCCTCATCACTGCTCCGGGTGAATTCTCAGGTCAGCATTTTTTCTTGTGCATTGCTGTTGTGTTGAAATTTATCGAAGGGGACAGCTGCGGAGGGGGCTTGGTGGAAGACTTTTTGACTTCCCCTCTTCTTTTTGTTTCCCTTTTCCTCCAATCCTTGGATGGGAAGGTTGCCAATGTTTCAGTCCCTGGTGTTTTTGGGGTTAAGAACAGTCTGTATGAGTGAAACCTG
.............................................................(((....((((.......)))).))).......(((((((((((....((((((((...(((.((((...)))).))))))))))).....))))).))))))......................................................................................
.............................................................62......................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040027(GSM532912)
G220T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
...........CTACCAACTCCCTCATC.............................................................................................................................................................................................................................. 171.000.00--------------------1.00-----------------------------------
...........CTACCAACTCCCTCATACG............................................................................................................................................................................................................................ 191.000.001.00-------------------------------------------------------
...............................................................................................................................................................................................................ACCCCAAAAACACCA............................ 1570.140.14---------------------------------------------------0.14----
...........................................................................................................................................................................................................................AGACTGTTCTTAACC................ 1590.110.11------0.11-------------------------------------------------