ID: uc002apr.2_intron_6_0_chr15_66645294_r.5p
GENE: TIPIN(1)
chr15:66648777-66649026-


(10)
B-CELL 		(1)
BRAIN 		(8)
BREAST 		(34)
CELL-LINE 		(12)
CERVIX 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
XRN.ip

Sense strand
CTTAGTCTGCACGCCGAGGTCCGCGCTGTGTCCCGTGTTTTCTGCGTGAGGTGAGAGCTGGCTGGCGGGCCAATGAAGTTCTTGCGGGGAGAGGGGAGTCGGACTAGCCAGGGAGCCAGATGGAAGAGCCAGGGAGCCAGACAGACTAGCGGGAAAGCCTAATTGTCGCAGGAAGGGGGTCAGGAGGTTGGGGGGTCGACCTGACCCGGCCTGGAGAGGCGGGGAGGTGGGCGCGTGTCCCGGTTGCTTA
.................................................................................................(((((.((((((..((..((...(((.....))).))..)).(((...((.((((.((.......)).))))....))...)))....))))))....)))))..................................................
............................................................................................93.........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		TAX577590(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029129(GSM416758)
SW480. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		TAX577589(Rovira)
total RNA. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577588(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR040017(GSM532902)
G645T. (cervix)		SRR038860(GSM458543)
MM426. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
.................................................................................................GTCGGACTAGCCAGGGAGCC.....................................................................................................................................2016.006.00--6.00---------------------------------------------------------------------------------
................................................AGGTGAGAGCTGGCTGGC........................................................................................................................................................................................1816.006.00-----3.00------1.00----------------------1.00----------------------------------1.00-------------
.........................................................................................AGAGGGGAGTCGGACTAG...............................................................................................................................................1815.005.00--------4.00---------------------1.00-----------------------------------------------------
...................................................................................................................................................................................TCAGGAGGTTGGGGGTTC.....................................................184.000.00----4.00-------------------------------------------------------------------------------
..........................................................................................GAGGGGAGTCGGACTAGCC.............................................................................................................................................1914.004.00---------------------------2.00-----------------------------------------1.00----1.00---------
..................................................................GGGCCAATGAAGTTCTTGCG....................................................................................................................................................................2013.003.00---3.00--------------------------------------------------------------------------------
.......................................................................................................................ATGGAAGAGCCAGGGAGC.................................................................................................................1813.003.00--2.00----------------------------------------------------------1.00----------------------
...................................................................................................CGGACTAGCCAGGGAGCCAGATGG...............................................................................................................................2413.003.00-3.00----------------------------------------------------------------------------------
...........................................................................................AGGGGAGTCGGACTAGCCAGG..........................................................................................................................................2113.003.003.00-----------------------------------------------------------------------------------
..........................................................................................GAGGGGAGTCGGACTAGCTC............................................................................................................................................2013.001.00-3.00----------------------------------------------------------------------------------
................................................................................................................GAGCCAGATGGAAGAGCC........................................................................................................................1813.003.00--3.00---------------------------------------------------------------------------------
.........................................................................................................AGCCAGGGAGCCAGATGGAAGAGCCAGGGAGCCA...............................................................................................................3413.003.00-------------3.00----------------------------------------------------------------------
................................................................GCGGGCCAATGAAGTTCTTG......................................................................................................................................................................2013.003.002.001.00----------------------------------------------------------------------------------
.............................................................................................................................GAGCCAGGGAGCCAGACAGACTAGCG...................................................................................................2613.003.00-----------3.00------------------------------------------------------------------------
.............................................GTGAGGTGAGAGCTGGCTGGC........................................................................................................................................................................................2113.003.001.00---------------------------------------------------------------1.00--1.00----------------
................................................AGGTGAGAGCTGGCTGGCAA......................................................................................................................................................................................2012.006.00-----2.00------------------------------------------------------------------------------
.............................................GTGAGGTGAGAGCTGGCTGG.........................................................................................................................................................................................2012.002.00-------------------------------------1.00-1.00--------------------------------------------
..................................................................................................................GCCAGATGGAAGAGCCAGG.....................................................................................................................1912.002.002.00-----------------------------------------------------------------------------------
.........................................CTGCGTGAGGTGAGAGCTG..............................................................................................................................................................................................1912.002.00------1.00-----------------------------------------------------------1.00-----------------
....................................GTTTTCTGCGTGAGGTGAG...................................................................................................................................................................................................1912.002.00--------------------2.00---------------------------------------------------------------
............................................................................................GGGGAGTCGGACTAGCCAGGGAGC......................................................................................................................................2412.002.002.00-----------------------------------------------------------------------------------
...................................................................................................................................................AGCGGGAAAGCCTAATTG.....................................................................................1812.002.00--------------------------------------------------1.00--1.00------------------------------
...............................................................................................GAGTCGGACTAGCCAGGGAGCC.....................................................................................................................................2212.002.00-------2.00----------------------------------------------------------------------------
...........................................................................................AGGGGAGTCGGACTAGCC.............................................................................................................................................1812.002.00------------------------------------------------------------1.00------------1.00----------
...................................................................................................CGGACTAGCCAGGGAGCC.....................................................................................................................................1812.002.00-----------------1.00----------------------------1.00-------------------------------------
.............CCGAGGTCCGCGCTGTGTCCCGTGTTTT.................................................................................................................................................................................................................2812.002.00-------2.00----------------------------------------------------------------------------
.........................CTGTGTCCCGTGTTTTCT...............................................................................................................................................................................................................1812.002.00----------------2.00-------------------------------------------------------------------
...................................................................................................................................................................................TCAGGAGGTTGGGGGTGC.....................................................182.000.00----2.00-------------------------------------------------------------------------------
.................................................................CGGGCCAATGAAGTTCTTGC.....................................................................................................................................................................2012.002.002.00-----------------------------------------------------------------------------------
...................................................................................................................CCAGATGGAAGAGCCAGGG....................................................................................................................1912.002.00---2.00--------------------------------------------------------------------------------
..................................GTGTTTTCTGCGTGAGGTGA....................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------1.00------------
......................................TTTCTGCGTGAGGTGAGAGC................................................................................................................................................................................................2011.001.00------1.00-----------------------------------------------------------------------------
................................................................................................................................................ACTAGCGGGAAAGCCTAATT......................................................................................2011.001.00---1.00--------------------------------------------------------------------------------
....................................................................................CGGGGAGAGGGGAGTCGGACTA................................................................................................................................................2211.001.00-----------------------------1.00------------------------------------------------------
....................................................................................................................................................................GTCGCAGGAAGGGGGGTCG...................................................................191.000.00------------------------------------------1.00-----------------------------------------
...................................................................................................................................................................................TCAGGAGGTTGGGGGGTCGGGGC................................................231.000.00----1.00-------------------------------------------------------------------------------
.........................................................................................AGAGGGGAGTCGGACTCGC..............................................................................................................................................191.000.001.00-----------------------------------------------------------------------------------
.....................................................................................................................AGATGGAAGAGCCAGGGAG..................................................................................................................1911.001.001.00-----------------------------------------------------------------------------------
.........................................................................................AGAGGGGAGTCGGACTATT..............................................................................................................................................191.000.00--------------------------------1.00---------------------------------------------------
...............................................................GGCGGGCCAATGAAGTTCTTT......................................................................................................................................................................211.000.001.00-----------------------------------------------------------------------------------
.....................................................AGAGCTGGCTGGCGGGCCAATGAAG............................................................................................................................................................................2511.001.00-----------------------------------------------------------------------------1.00------
.......................................................................................................................ATGGAAGAGCCAGGGAGCCAGA.............................................................................................................2211.001.00------------------------------------------------------------------------1.00-----------
.........................................CTGCGTGAGGTGAGAGCT...............................................................................................................................................................................................1811.001.00---------------------------------------------1.00--------------------------------------
.......................................TTCTGCGTGAGGTGAGAGCTG..............................................................................................................................................................................................2111.001.00------------------------------------------------1.00-----------------------------------
........................................................................................GAGAGGGGAGTCGGACTAGCCAGGGAGC......................................................................................................................................2811.001.00---------------------------------------------------------------------------1.00--------
.........................................................................................AGAGGGGAGTCGGACTAGCCAGTT.........................................................................................................................................241.000.00--------------------------------------1.00---------------------------------------------
....................................GTTTTCTGCGTGAGGTGAGAG.................................................................................................................................................................................................2111.001.00----------------------------------------1.00-------------------------------------------
.............................................................................................GGGAGTCGGACTAGCCAGGG.........................................................................................................................................2011.001.001.00-----------------------------------------------------------------------------------
............................................................................................GGGGAGTCGGACTAGCCAG...........................................................................................................................................1911.001.00---------1.00--------------------------------------------------------------------------
.......................................TTCTGCGTGAGGTGAGCTG................................................................................................................................................................................................191.000.00----------------------------------1.00-------------------------------------------------
.............................................................................................GGGAGTCGGACTAGCCAGG..........................................................................................................................................1911.001.00---------------------------------------------------------------1.00--------------------
.........................................................CTGGCTGGCGGGCCAATTAA.............................................................................................................................................................................201.000.00------1.00-----------------------------------------------------------------------------
................................................AGGTGAGAGCTGGCTGGCGG......................................................................................................................................................................................2011.001.00-----------------------------1.00------------------------------------------------------
.............................................................................................................AGGGAGCCAGATGGAAGA...........................................................................................................................1811.001.00-------------------------1.00----------------------------------------------------------
........................................................................................................................................................................................................................AGGCGGGGAGGTGGGCAA................181.000.00---------------------------------1.00--------------------------------------------------
........................................................................ATGAAGTTCTTGCGGGGAGAGG............................................................................................................................................................2211.001.00-1.00----------------------------------------------------------------------------------
...................................................................................................CGGACTAGCCAGGGAGC......................................................................................................................................1711.001.00---------------1.00--------------------------------------------------------------------
........................................................................ATGAAGTTCTTGCGGGGA................................................................................................................................................................1811.001.00----------1.00-------------------------------------------------------------------------
................................................................GCGGGCCAATGAAGTTCTTGCGGGGAGAG.............................................................................................................................................................2911.001.00---------1.00--------------------------------------------------------------------------
...............................................................................TCTTGCGGGGAGAGGGG..........................................................................................................................................................1711.001.00---------------1.00--------------------------------------------------------------------
...........................................................................................................................AAGAGCCAGGGAGCCAGAAGAC.........................................................................................................221.000.00------------------------1.00-----------------------------------------------------------
.................................................................CGGGCCAATGAAGTTCTTGCGG...................................................................................................................................................................2211.001.00-1.00----------------------------------------------------------------------------------
...................................................................................GCGGGGAGAGGGGAGTCG.....................................................................................................................................................1811.001.00--------------1.00---------------------------------------------------------------------
........................................TCTGCGTGAGGTGAGAGCTGGCTGGCG.......................................................................................................................................................................................2711.001.00-------------------------------1.00----------------------------------------------------
..................................................................................................TCGGACTAGCCAGGGAGAAA....................................................................................................................................201.000.00------------1.00-----------------------------------------------------------------------
..................................................................GGGCCAATGAAGTTCTTGC.....................................................................................................................................................................1911.001.00-1.00----------------------------------------------------------------------------------
...............................................................................................................................................................TAATTGTCGCAGGAAGGGG........................................................................1911.001.00---------1.00--------------------------------------------------------------------------
..................................................................................................TCGGACTAGCCAGGGAGCCAGA..................................................................................................................................2211.001.00----------------------------------------------------------------------------1.00-------
.............................................................CTGGCGGGCCAATGAAGT...........................................................................................................................................................................1811.001.00---------------------1.00--------------------------------------------------------------
....................................................................................................GGACTAGCCAGGGAGCCAGATGGAAGA...........................................................................................................................2711.001.00-------------------------------------------------1.00----------------------------------
.............................GTCCCGTGTTTTCTGCGTGA.........................................................................................................................................................................................................2011.001.00--------------------------------------------------------------1.00---------------------
.........................................................................................................................................................................................GGTTGGGGGGTCGACTCC...............................................181.000.00---------------------------------------------------1.00--------------------------------
..............................................................TGGCGGGCCAATGAAGTT..........................................................................................................................................................................1811.001.00-----------------------------------------------------------------1.00------------------
.........................................CTGCGTGAGGTGAGAGCCGGC............................................................................................................................................................................................211.000.00-------------------------------------------------------------------------------1.00----
...................................................TGAGAGCTGGCTGGCGGG.....................................................................................................................................................................................1811.001.00------1.00-----------------------------------------------------------------------------
..................................................................................................................GCCAGATGGAAGAGCCAGGGAGCCAGA.............................................................................................................2711.001.00-1.00----------------------------------------------------------------------------------
....................................................................................CGGGGAGAGGGGAGTCGGA...................................................................................................................................................1911.001.00--------------------------------------------------------1.00---------------------------
................................................AGGTGAGAGCTGGCTGGCG.......................................................................................................................................................................................1911.001.00-----1.00------------------------------------------------------------------------------
............................................................GCTGGCGGGCCAATGAAGTT..........................................................................................................................................................................2011.001.001.00-----------------------------------------------------------------------------------
............................................................................................GGGGAGTCGGACTAGCCA............................................................................................................................................1811.001.00-------------------------------------------1.00----------------------------------------
............................................CGTGAGGTGAGAGCTGGCTGGCG.......................................................................................................................................................................................2311.001.00------------------------------------------------------1.00-----------------------------
...............................................GAGGTGAGAGCTGGCTGG.........................................................................................................................................................................................1811.001.00-----------------------1.00------------------------------------------------------------
........................................................GCTGGCTGGCGGGCCAAA................................................................................................................................................................................181.000.00----------1.00-------------------------------------------------------------------------
............................................CGTGAGGTGAGAGCTGGC............................................................................................................................................................................................1811.001.00---------------1.00--------------------------------------------------------------------
......................................TTTCTGCGTGAGGTGAGAGCTGGCTGGC........................................................................................................................................................................................2811.001.00---1.00--------------------------------------------------------------------------------
....................................................GAGAGCTGGCTGGCGGGC....................................................................................................................................................................................1811.001.00----------------------------------------------------------1.00-------------------------
........................................................................................................TAGCCAGGGAGCCAGATG................................................................................................................................1811.001.00-------------------------1.00----------------------------------------------------------
........................................................................................................................TGGAAGAGCCAGGGAGCCAGACAGACTAGCGG..................................................................................................3211.001.00----------------------1.00-------------------------------------------------------------
...........................................GCGTGAGGTGAGAGCTGGC............................................................................................................................................................................................1911.001.00----------1.00-------------------------------------------------------------------------
.......................................................................................................................ATGGAAGAGCCAGGGAGCCAG..............................................................................................................2111.001.00----------1.00-------------------------------------------------------------------------
.......................................................................................................................................................................................................CCTGACCCGGCCTGGAC..................................171.000.00--------------------------1.00---------------------------------------------------------
.......................................TTCTGCGTGAGGTGAGAG.................................................................................................................................................................................................1811.001.00------1.00-----------------------------------------------------------------------------
...............................................................................TCTTGCGGGGAGAGGGGAG........................................................................................................................................................1911.001.00----------------------------------------------------1.00-------------------------------
............................................CGTGAGGTGAGAGCTGGCTGG.........................................................................................................................................................................................2111.001.00-------------------------------------------------------1.00----------------------------
.........CACGCCGAGGTCCGCGCTG..............................................................................................................................................................................................................................1911.001.00--------------1.00---------------------------------------------------------------------
........................................TCTGCGTGAGGTGAGAGCTGGC............................................................................................................................................................................................2211.001.00--------------------------------------------------------------------1.00---------------
...................................................................................................................................................................................TCAGGAGGTTGGGGGTTTG....................................................191.000.00------------------------------------1.00-----------------------------------------------
...................................................................................................................................................................................TCAGGAGGTTGGGGGTTT.....................................................181.000.00----1.00-------------------------------------------------------------------------------
...............................................GAGGTGAGAGCTGGCTGGCGGG.....................................................................................................................................................................................2211.001.00-----------------------------------------------------------1.00------------------------
..........................................................................................GAGGGGAGTCGGACTAGC..............................................................................................................................................1811.001.00---------1.00--------------------------------------------------------------------------
........................................................................................GAGAGGGGAGTCGGACTAG...............................................................................................................................................1911.001.00-------------------1.00----------------------------------------------------------------
...................................................................................................................................................................................TCAGGAGGTTGGGGGTTCG....................................................191.000.00---------------------------------------------------------1.00--------------------------
...............................................................................................GAGTCGGACTAGCCAGGG.........................................................................................................................................1811.001.00-----------------1.00------------------------------------------------------------------
..............................................TGAGGTGAGAGCTGGCTGG.........................................................................................................................................................................................1911.001.00---------------------1.00--------------------------------------------------------------
........................................................................................................................TGGAAGAGCCAGGGAGCCAGACAGAC........................................................................................................2611.001.00---------------------------------------------------------------------------------1.00--
..............................................................TGGCGGGCCAATGAAGTTCTTG......................................................................................................................................................................2211.001.00-------------------1.00----------------------------------------------------------------
..................................................................................................TCGGACTAGCCAGGGAGCCA....................................................................................................................................2011.001.00------------1.00-----------------------------------------------------------------------
.........................................................................................AGAGGGGAGTCGGACTAGC..............................................................................................................................................1911.001.001.00-----------------------------------------------------------------------------------
....................................................................................................................CAGATGGAAGAGCCAGGGAGCCAGACAGA.........................................................................................................2911.001.00-----------------------------------------------1.00------------------------------------
.......................................TTCTGCGTGAGGTGAGC..................................................................................................................................................................................................171.000.00--------------------------------------------1.00---------------------------------------
..................................................GTGAGAGCTGGCTGGCGGGC....................................................................................................................................................................................2011.001.00-1.00----------------------------------------------------------------------------------
..............................................................................TTCTTGCGGGGAGAGGGGAGTCGGACC.................................................................................................................................................271.000.00----------------------1.00-------------------------------------------------------------
.......................................TTCTGCGTGAGGTGAGAGCTGG.............................................................................................................................................................................................2211.001.00----------------------------1.00-------------------------------------------------------
..................................................................................................TCGGACTAGCCAGGGAGCCAGACGG...............................................................................................................................2511.001.00------------------------1.00-----------------------------------------------------------
..................................................................................................................GCCAGATGGAAGAGCCAGGGA...................................................................................................................2111.001.00------------------1.00-----------------------------------------------------------------
........................................TCTGCGTGAGGTGAGAGCTGG.............................................................................................................................................................................................2111.001.00----------------------------1.00-------------------------------------------------------
.................................................................CGGGCCAATGAAGTTCTTGCG....................................................................................................................................................................2111.001.00---1.00--------------------------------------------------------------------------------
..............................................................................................................GGGAGCCAGATGGAAGAC..........................................................................................................................181.000.00------------------------------------------------------------------------------1.00-----
.............................................................CTGGCGGGCCAATGA..............................................................................................................................................................................1520.500.50----------------------------------------------------------------------------------0.50-
..................................................................................................................GCCAGATGGAAGAGCCAG......................................................................................................................1820.500.50----------------0.50-------------------------------------------------------------------
...................................................................................................................................................................................TCAGGAGGTTGGGGGGT......................................................1730.330.33------------------------------0.33-----------------------------------------------------
.............CCGAGGTCCGCGCTG..............................................................................................................................................................................................................................1530.330.33-----------------0.33------------------------------------------------------------------
...............................................................................................................GGAGCCAGATGGAAGAG..........................................................................................................................1760.170.17-----------------------------------------------------------------------------------0.17

Antisense strand
CTTAGTCTGCACGCCGAGGTCCGCGCTGTGTCCCGTGTTTTCTGCGTGAGGTGAGAGCTGGCTGGCGGGCCAATGAAGTTCTTGCGGGGAGAGGGGAGTCGGACTAGCCAGGGAGCCAGATGGAAGAGCCAGGGAGCCAGACAGACTAGCGGGAAAGCCTAATTGTCGCAGGAAGGGGGTCAGGAGGTTGGGGGGTCGACCTGACCCGGCCTGGAGAGGCGGGGAGGTGGGCGCGTGTCCCGGTTGCTTA
.................................................................................................(((((.((((((..((..((...(((.....))).))..)).(((...((.((((.((.......)).))))....))...)))....))))))....)))))..................................................
............................................................................................93.........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		TAX577590(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029129(GSM416758)
SW480. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		TAX577589(Rovira)
total RNA. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577588(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR040017(GSM532902)
G645T. (cervix)		SRR038860(GSM458543)
MM426. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
.............................................................................................................................GAGCCAGGGAGCCAGAGAAA......................................................................................................... 201.000.00--------------------------------------------------------------------------------1.00---
...................................................................................................................CCAGATGGAAGAGCCGAAA.................................................................................................................... 191.000.00-----------------------1.00------------------------------------------------------------
....................................................................................................................................................................................................................................GGGCGCGTGTCCCGGTCT.... 181.000.00-----------------------------------------1.00------------------------------------------
...............GGACACAGCGCGGACCTC......................................................................................................................................................................................................................... 1811.001.00------------------1.00-----------------------------------------------------------------
...............................CCCGTGTTTTCTGCGGCG......................................................................................................................................................................................................... 181.000.00--------------------------1.00---------------------------------------------------------
.............GACACAGCGCGGACCTCGG.......................................................................................................................................................................................................................... 1911.001.00--------------1.00---------------------------------------------------------------------