ID: uc002amc.2_intron_7_0_chr15_63637819_r.5p
GENE: (3)
chr15:63638529-63638778-


(3)
AGO2.ip
(1)
BRAIN
(17)
BREAST
(11)
CELL-LINE
(6)
CERVIX
(1)
HEART
(1)
KIDNEY
(1)
LIVER
(2)
OTHER
(32)
SKIN
(3)
UTERUS

Sense strand
CAATCTGTCTGCCAACAAGCAGTTTCTCCTGACCAACAATGGCCATTCAGGTGAGGGAGAGGCCTTGGAGACCTGAGGGGTATGTCTGAGTCTCCCTCAGCTGCCAGGCCTGTCCTTTTCCATCTGGCAGGGAGGTGTTCCGTGGAAGCATCCAGGAGGAGGGGTGGGGCGGGGCGGGGGTGTCTTTGAGAGATTCCAGGAGCACTCTCTCCAGGGGATGCTGGAGGCTCTGGGCTCTGAGGATCCTGCC
......................................................((((.(((((.(((....(((((((..((......))..)))))))...)))))))).))))......................................................................................................................................
..................................................51...............................................................116....................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189786SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189784SRR040011(GSM532896)
G529T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040043(GSM532928)
G428T. (cervix)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040027(GSM532912)
G220T. (cervix)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
........................................................GAGAGGCCTTGGAGACCTGA..............................................................................................................................................................................20134.0034.0013.004.007.00-2.00---------1.00-----1.00-------------1.00------1.00-----1.00--------1.00---------1.00--1.00---------
........................................................GAGAGGCCTTGGAGACCTGAG.............................................................................................................................................................................21112.0012.002.002.00-2.00-------1.00-------------1.00----1.00-1.00---------------1.00---1.00--------------------------
........................................................GAGAGGCCTTGGAGACCTGAGGG...........................................................................................................................................................................2319.009.002.001.00-3.00-----------1.00-----2.00---------------------------------------------------------
........................................................GAGAGGCCTTGGAGACCTGAGG............................................................................................................................................................................2218.008.00-----1.00---------1.00------------1.00---------------------1.00------1.001.00----1.00---1.00-----------
........................................................GAGAGGCCTTGGAGACCT................................................................................................................................................................................1817.007.001.00-----2.003.00-----------------------------1.00-----------------------------------------
.........................................................AGAGGCCTTGGAGACCTGA..............................................................................................................................................................................1916.006.002.00-1.00-1.00-------------2.00------------------------------------------------------------
........................................................GAGAGGCCTTGGAGACCTGAGGGT..........................................................................................................................................................................2415.009.001.00-------------------------------------1.00---1.00-------------------------1.00-1.00--------
........................................................GAGAGGCCTTGGAGACCTGAGGGC..........................................................................................................................................................................2413.009.00-----2.00--1.00----------------------------------------------------------------------
........................................................GAGAGGCCTTGGAGACCTG...............................................................................................................................................................................1913.003.00-1.00--1.00---------------1.00----------------------------------------------------------
.........................................................AGAGGCCTTGGAGACCTGAG.............................................................................................................................................................................2013.003.00--2.00------------------------------------------------1.00---------------------------
...............................................................................................CTCAGCTGCCAGGCCTGTCCATC....................................................................................................................................2322.501.00---------2.50---------------------------------------------------------------------
...................................ACAATGGCCATTCAGGTGAGG..................................................................................................................................................................................................2112.002.00------------2.00------------------------------------------------------------------
...............................................................................................CTCAGCTGCCAGGCCTGTC........................................................................................................................................1922.002.001.50----------------------0.50-------------------------------------------------------
...............................................................................................CTCAGCTGCCAGGCCTGTCCT......................................................................................................................................2112.002.00-------------------1.00------------------------------------------------------1.00----
........................................................GAGAGGCCTTGGAGACCTGAGA............................................................................................................................................................................2212.0012.001.001.00-----------------------------------------------------------------------------
................................................................................................TCAGCTGCCAGGCCTGTCCTTA....................................................................................................................................2211.001.00-------------------------------------------1.00-----------------------------------
.........................................................AGAGGCCTTGGAGACCTGAGG............................................................................................................................................................................2111.001.00------------------------1.00------------------------------------------------------
........................................................................................................................................................................GCGGGGCGGGGGTGTGCG................................................................181.000.00---------------------------------------1.00---------------------------------------
.......................................................GGAGAGGCCTTGGAGACCT................................................................................................................................................................................1911.001.00------1.00------------------------------------------------------------------------
........................................................GAGAGGCCTTGGAGACCTGAAAAA..........................................................................................................................................................................2411.0034.00-1.00-----------------------------------------------------------------------------
.................................................................................................................................................AAGCATCCAGGAGGAACT.......................................................................................181.000.00--------------------------------------------1.00----------------------------------
.........................................................AGAGGCCTTGGAGACCTGAGGGGT.........................................................................................................................................................................2411.001.00-1.00-----------------------------------------------------------------------------
...............................................................................................CTCAGCTGCCAGGCCTGTCC.......................................................................................................................................2021.001.000.500.50-----------------------------------------------------------------------------
........................................................................................................................................................................GCGGGGCGGGGGTGTTT.................................................................171.000.00-----------------------------------------------------------1.00-------------------
........................................................GAGAGGCCTTGGAGACCTGAGGGA..........................................................................................................................................................................2411.009.00----------------------------------------1.00--------------------------------------
........................................................GAGAGGCCTTGGAGACCTGAGGGAT.........................................................................................................................................................................2511.009.00-----------------------------------------------------------------------1.00-------
........................................................GAGAGGCCTTGGAGACCTGAAA............................................................................................................................................................................2211.0034.00-------------------------------------------------1.00-----------------------------
.................................................................................................CAGCTGCCAGGCCTGTCCT......................................................................................................................................1911.001.00------------------------------------------------------1.00------------------------
..........................................................................................................................................TCCGTGGAAGCATCCAAA..............................................................................................181.000.00----------------1.00--------------------------------------------------------------
.........................................................AGAGGCCTTGGAGACCTGAGGGA..........................................................................................................................................................................2311.001.00-1.00-----------------------------------------------------------------------------
........................................................GAGAGGCCTTGGAGACCTGAGGGAA.........................................................................................................................................................................2511.009.001.00------------------------------------------------------------------------------
.......................................................................................................................................................................GGCGGGGCGGGGGTGTAGCT...............................................................201.000.00----------------------------------------------------------------1.00--------------
...............................................................................................CTCAGCTGCCAGGCCTGTCCTAT....................................................................................................................................2311.002.00-----------------------1.00-------------------------------------------------------
...............................................................................................CTCAGCTGCCAGGCCTGT.........................................................................................................................................1821.001.00-0.50----------------------0.50------------------------------------------------------
......................................................GGGAGAGGCCTTGGAGACCTGAG.............................................................................................................................................................................2311.001.00-----1.00-------------------------------------------------------------------------
........................................................GAGAGGCCTTGGAGACCTGAGGGG..........................................................................................................................................................................2411.001.00----------------------1.00--------------------------------------------------------
........................................................GAGAGGCCTTGGAGACCTGAA.............................................................................................................................................................................2111.0034.00----------------------1.00--------------------------------------------------------
................................................................................................TCAGCTGCCAGGCCTGTCCTA.....................................................................................................................................211.000.00-------------------------------------------------------1.00-----------------------
........................................................GAGAGGCCTTGGAGACCTGAAC............................................................................................................................................................................2211.0034.00--1.00----------------------------------------------------------------------------
...........CCAACAAGCAGTTTCTCCTGACCAACA....................................................................................................................................................................................................................2711.001.00-------------------------------------------------------------1.00-----------------
................................................................................................TCAGCTGCCAGGCCTGTCCTT.....................................................................................................................................2111.001.00-----------------1.00-------------------------------------------------------------
........................................................GAGAGGCCTTGGAGACCGAGG.............................................................................................................................................................................2121.000.50--------1.00----------------------------------------------------------------------
...............................................................................................CTCAGCTGCCAGGCCTGTCCTAA....................................................................................................................................2311.002.00--1.00----------------------------------------------------------------------------
.........................................................AGAGGCCTTGGAGACCTGAGGG...........................................................................................................................................................................2211.001.00---------------------------------1.00---------------------------------------------
.........................................................AGAGGCCTTGGAGACCT................................................................................................................................................................................1720.500.50------0.50------------------------------------------------------------------------
........................................................GAGAGGCCTTGGAGACC.................................................................................................................................................................................1720.500.50-------0.50-----------------------------------------------------------------------
................................................................................................TCAGCTGCCAGGCCTGTCC.......................................................................................................................................1920.500.50---------------------------------------------------------------------------0.50---
...................................................................................................................TTTTCCATCTGGCAGG.......................................................................................................................1650.200.20------------------------------------------------------------------------------0.20

Antisense strand
CAATCTGTCTGCCAACAAGCAGTTTCTCCTGACCAACAATGGCCATTCAGGTGAGGGAGAGGCCTTGGAGACCTGAGGGGTATGTCTGAGTCTCCCTCAGCTGCCAGGCCTGTCCTTTTCCATCTGGCAGGGAGGTGTTCCGTGGAAGCATCCAGGAGGAGGGGTGGGGCGGGGCGGGGGTGTCTTTGAGAGATTCCAGGAGCACTCTCTCCAGGGGATGCTGGAGGCTCTGGGCTCTGAGGATCCTGCC
......................................................((((.(((((.(((....(((((((..((......))..)))))))...)))))))).))))......................................................................................................................................
..................................................51...............................................................116....................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189786SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189784SRR040011(GSM532896)
G529T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040043(GSM532928)
G428T. (cervix)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040027(GSM532912)
G220T. (cervix)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
..............................................................................................................................................................GAGGGGTGGGGCGGGGGCGC........................................................................ 2011.000.00-1.00--1.00-----1.00--2.00---1.00--------1.001.00-----------------1.00--------------1.00-----------1.00------
..............................................................................................................................................................GAGGGGTGGGGCGGGGCG.......................................................................... 184.000.00-----------------------------------1.001.00----------------1.00--------1.00----------------
..........................................................................................................................................................GGAGGAGGGGTGGGGCGGGC............................................................................ 202.000.00-------------------------------1.00-----------------------------------------1.00-----
..............................................................................................................................................................GAGGGGTGGGGCGGGGCGC......................................................................... 192.000.00-------------------1.00--------------------------1.00--------------------------------
..............................................................................................ACAGGCCTGGCAGCTGAGG......................................................................................................................................... 1911.001.00-----------------------------1.00-------------------------------------------------
..............................................................................................................................................................................CGGGGGTGTCTTTGAACCA......................................................... 191.000.00----------------1.00--------------------------------------------------------------
.................................................................................................................................................................................................TTCCAGGAGCACTCTGGAC...................................... 191.000.00-----------------------------------------------------------------1.00-------------
................................................................................................................................................................GGGGTGGGGCGGGGCGCTCC...................................................................... 201.000.00-----------1.00-------------------------------------------------------------------
........................................................................................................................................................CAGGAGGAGGGGTGGGGCAG.............................................................................. 201.000.00--------1.00----------------------------------------------------------------------
..........................................................................................................................................................GGAGGAGGGGTGGGGCGGGCCGC......................................................................... 231.000.00--------------1.00----------------------------------------------------------------
..............................................................................................................................................................GAGGGGTGGGGCGGGGGCG......................................................................... 191.000.00----------1.00--------------------------------------------------------------------
..........................................................................................................................................................CCGCCCCACCCCTCCTCC.............................................................................. 1830.330.33--------------------------0.33----------------------------------------------------
..........................................................................................................................................................GGAGGAGGGGTGGGGCGGCC............................................................................ 200.330.00----------------------------------------------------------------------------0.33--
........................................................................AGACATACCCCTCAG................................................................................................................................................................... 1530.330.33-------------------------0.33-----------------------------------------------------
..........................................................................................................................................................CGCCCCACCCCTCCTCC............................................................................... 1740.250.25---------------------------0.25---------------------------------------------------
..........................................................................................................................................................GGAGGAGGGGTGGGGCGCCGC........................................................................... 210.250.00-----------------------------------------------------------------------------0.25-