ID: uc002alb.3_intron_3_0_chr15_62945514_f.5p
GENE: (4)
chr15:62945464-62945713+


(4)
BREAST 		(7)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(9)
LIVER 		(1)
OTHER 		(4)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TGAGAGGAAAATGGAGAAGTTGAAGGCCAAGCTGCACACAGATGATGACCGTAAGTGTTTGCAGAGGAAGCATGATACAGACACACAGGCTTTGCTAAGCCTCACTTCCCTCCCACCATCCATATGACCCAGGACAGGACTTTTGATTTTTGTTTTTAAAACTCTATTTTAAAAAAGTAGGCTGGGCTCAGTGGCTCACTTCTATAATCCCAGTATTTTGGGAGGCCAAGGCAGGTGTATTACCTGAGGT
.....................................................((.((((.....(((((((.(((.((((.....((((((....))))))....(((.(((...(((....))).....)))..)))..)))))))..))))))).)))).)).....................................................................................
..................................................51.........................................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189784TAX577588(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
....................................................AAGTGTTTGCAGAGGAAACT..................................................................................................................................................................................2036.000.0026.004.001.00--1.00-1.00-1.00-----1.00-----------1.00-----
....................................................AAGTGTTTGCAGAGGAAAC...................................................................................................................................................................................1927.000.0015.006.002.00--1.001.001.00-----------------1.00-------
....................................................AAGTGTTTGCAGAGGAAA....................................................................................................................................................................................185.000.004.001.00-------------------------------
....................................................AAGTGTTTGCAGAGGAAATT..................................................................................................................................................................................204.000.004.00--------------------------------
....................................................AAGTGTTTGCAGAGGAAACTG.................................................................................................................................................................................213.000.001.001.00--------------1.00----------------
....................................................AAGTGTTTGCAGAGGAAAGT..................................................................................................................................................................................202.000.002.00--------------------------------
....................................................AAGTGTTTGCAGAGGAAAG...................................................................................................................................................................................192.000.002.00--------------------------------
....................................................AAGTGTTTGCAGAGGAAAT...................................................................................................................................................................................192.000.002.00--------------------------------
....................................................AAGTGTTTGCAGAGGAAAA...................................................................................................................................................................................192.000.001.00-----1.00--------------------------
....................................................AAGTGTTTGCAGAGGAAAAT..................................................................................................................................................................................201.000.001.00--------------------------------
....................................................AAGTGTTTGCAGAGGAAACTC.................................................................................................................................................................................211.000.00----------------------1.00----------
....................................................AAGTGTTTGCAGAGGAAATC..................................................................................................................................................................................201.000.00-1.00-------------------------------
.........................................................................................................................................................................................................................TTGGGAGGCCAAGGCAGGTGTAAC.........241.000.00---------------------1.00-----------
....................................................AAGTGTTTGCAGAGGAAGTT..................................................................................................................................................................................201.000.001.00--------------------------------
........................................................................................................................................................TTTTTAAAACTCTATTAATG..............................................................................201.000.00-----------1.00---------------------
........................................................................................................................................................................................GGCTCAGTGGCTCACTTG................................................181.000.00--------------------1.00------------
..AGAGGAAAATGGAGAAGTTGAAGGCCAAGCT.........................................................................................................................................................................................................................3111.001.00----1.00----------------------------
..................................................................................................................................................................................AGGCTGGGCTCAGTGGCTC.....................................................1901.001.00---1.00-----------------------------
..................................................................................................................................................................................AGGCTGGGCTCAGTGGC.......................................................1701.001.00---1.00-----------------------------
....................................................AAGTGTTTGCAGAGGAAGC...................................................................................................................................................................................1911.001.00---------1.00-----------------------
.................................................................................................................................................................................TAGGCTGGGCTCAGTGGCTCACCCCG...............................................261.000.00--------1.00------------------------
.......AAAATGGAGAAGTTGAAGG................................................................................................................................................................................................................................1911.001.00-----------------1.00---------------
..AGAGGAAAATGGAGAAGTTGAAGGCCAAGCTGC.......................................................................................................................................................................................................................3311.001.00----1.00----------------------------
....................................................AAGTGTTTGCAGAGGAAATTG.................................................................................................................................................................................211.000.00--------------------------1.00------
.........AATGGAGAAGTTGAAGGCCAAGCTGC.......................................................................................................................................................................................................................2611.001.00-----------------------1.00---------
....................................................AAGTGTTTGCAGAGGGAAC...................................................................................................................................................................................191.000.001.00--------------------------------
....................................................AAGTGTTTGCAGAGGAAGT...................................................................................................................................................................................191.000.001.00--------------------------------
....................................................AAGTGTTTGCAGAGGAAGCTGA................................................................................................................................................................................2211.001.00------------------1.00--------------
..............AGAAGTTGAAGGCCAAGCTGCACACAGATG..............................................................................................................................................................................................................3011.001.00--------1.00------------------------
....................................................AAGTGTTTGCAGAGGAAGGT..................................................................................................................................................................................201.000.001.00--------------------------------
....................................CACAGATGATGACCGTCTT...................................................................................................................................................................................................191.000.00------------1.00--------------------
................................TGCACACAGATGATGACC........................................................................................................................................................................................................1811.001.00----------1.00----------------------
...................................................................................................................................................................................GGCTGGGCTCAGTGGCTC.....................................................1801.001.00--------------1.00------------------

Antisense strand
TGAGAGGAAAATGGAGAAGTTGAAGGCCAAGCTGCACACAGATGATGACCGTAAGTGTTTGCAGAGGAAGCATGATACAGACACACAGGCTTTGCTAAGCCTCACTTCCCTCCCACCATCCATATGACCCAGGACAGGACTTTTGATTTTTGTTTTTAAAACTCTATTTTAAAAAAGTAGGCTGGGCTCAGTGGCTCACTTCTATAATCCCAGTATTTTGGGAGGCCAAGGCAGGTGTATTACCTGAGGT
.....................................................((.((((.....(((((((.(((.((((.....((((((....))))))....(((.(((...(((....))).....)))..)))..)))))))..))))))).)))).)).....................................................................................
..................................................51.........................................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189784TAX577588(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.ACTTCTCCATTTTCCTCTC...................................................................................................................................................................................................................................... 1912.002.00-------------1.00----------------1.00--
.........................GTCATCATCTGTGTGCAGCTTGGC......................................................................................................................................................................................................... 2411.001.00------------------------1.00--------
.....................................................................................................................................................................................................ACTTCTATAATCCCACTG................................... 181.000.00----------------------------1.00----
....AGGAAAATGGAGAAGTTGTAT................................................................................................................................................................................................................................. 211.000.00-------------------------------1.00-
...............................................................................................................................................................................................TGGCTCACTTCTATAATCCCTA..................................... 221.000.00-----------------------------1.00---
...........................................................................................................................................................TTAAAACTCTATTTTACTTT........................................................................... 201.000.00-------------------1.00-------------
..................................................................................................GGTGGGAGGGAAGTGAGGC..................................................................................................................................... 1920.500.50--------------------------------0.50